| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF005E06 | Sequence | 456 | 000954 (3) | ref|XP_006362049.1| | 117 | PREDICTED: ATP-dependent RNA helicase DBP2-like [Solanum tuberosum] | 541 | 012642 (3) | emb|CDP19193.1| | 6e-15 | unnamed protein product [Coffea canephora] |
| JMSF026N10 | Sequence | 667 | 000954 (3) | ref|XP_011089533.1| | 4e-73 | PREDICTED: DEAD-box ATP-dependent RNA helicase 20-like [Sesamum indicum] | 765 | 012642 (3) | ref|XP_011089533.1| | 4e-59 | PREDICTED: DEAD-box ATP-dependent RNA helicase 20-like [Sesamum indicum] |
| JMSF045L16 | Sequence | 780 | 000954 (3) | ref|XP_011089533.1| | 3e-95 | PREDICTED: DEAD-box ATP-dependent RNA helicase 20-like [Sesamum indicum] | 702 | 012642 (3) | ref|XP_011089533.1| | 1e-35 | PREDICTED: DEAD-box ATP-dependent RNA helicase 20-like [Sesamum indicum] |
This contig is upended
. : . : . : . : . : . :
rJMSF026N10+ CCACTGATGGTGCATCTCGTGGATTGGATGTCAATGGGGTTGCTCATG
____________________________________________________________
consensus CCACTGATGGTGCATCTCGTGGATTGGATGTCAATGGGGTTGCTCATG
. : . : . : . : . : . :
rJMSF045L16+ TTCCAAAGACCATGGAAGATTATGTCCATCGGATTGGGAGGACCG
rJMSF026N10+ TAATTAATCTAGATCTTCCAAAGACCATGGAAGATTATGTCCATCGGATTGGGAGGACCG
____________________________________________________________
consensus TAATTAATCTAGATCTTCCAAAGACCATGGAAGATTATGTCCATCGGATTGGGAGGACCG
. : . : . : . : . : . :
rJMSF045L16+ GTCGTGCAGGATCAACAGGCCAAGCCACATCATTTTTATACTGATCGAGATATGTATCTT
rJMSF026N10+ GTCGTGCAGGATCAACAGGCCAAGCCACATCA-TTTTATACTGATCGAGATATGTATCTT
____________________________________________________________
consensus GTCGTGCAGGATCAACAGGCCAAGCCACATCATTTTTATACTGATCGAGATATGTATCTT
. : . : . : . : . : . :
rJMSF005E06+ GCAATACTGTTACTTTTGCG
rJMSF045L16+ GTGGCACAAATAAGGAAAGCAATTGCAGATGTTGGGTCTGGCAATACTGTTACTTTTGCG
rJMSF026N10+ GTGGCACAAATAAGGAAAGCAATTGCAGATGTTGGGTCTGGCAATACTGTTACTTTTGCG
____________________________________________________________
consensus GTGGCACAAATAAGGAAAGCAATTGCAGATGTTGGGTCTGGCAATACTGTTACTTTTGCG
. : . : . : . : . : . :
rJMSF005E06+ ACTGGAAAGACTGCCAGAAGGAAGGAGAGAGAAGCTGCAGCTGCTCATAAGGAAGCAAAT
rJMSF045L16+ ACTGGAAAGACTGCCAGAAGGAAGGAGAGAGAAGCTGCAGCTGCTCATAAGGAAGCAAAT
rJMSF026N10+ ACTGGAAAGACTGCCAGAAGGAAGGAGAGAGAAGCTGCAGCTGCTCATAAGGAAGCAAAT
____________________________________________________________
consensus ACTGGAAAGACTGCCAGAAGGAAGGAGAGAGAAGCTGCAGCTGCTCATAAGGAAGCAAAT
. : . : . : . : . : . :
rJMSF005E06+ ATTGCACTCTCAAAACTGTCCTTAATGGGGTCCACTNCAATAAACGTTGAGGACAAGTAT
rJMSF045L16+ ATTGCACTCTCAAAACTGTCCTTAATGGGGTCCACTCCAATAAACGTTGAGGACAAGTAT
rJMSF026N10+ ATTGCACTCTCAAAACTGTCCTTAATGGGGTCCACTCCAATAAACGTTGAGGACAAGTAT
____________________________________________________________
consensus ATTGCACTCTCAAAACTGTCCTTAATGGGGTCCACTCCAATAAACGTTGAGGACAAGTAT
. : . : . : . : . : . :
rJMSF005E06+ AGGCACATGATTGCCCCTGCAATGTCCAGGAAAGAGGGAGCTGCAGACGGTGCTTGGGAT
rJMSF045L16+ AGGCACATGATTGCCCCTGCAATGTCCAGGAAAGAGGGAGCTGCAGACGGTGCTTGGGAT
rJMSF026N10+ AGGCACATGATTGCCCCTGCAATGTCCAGGAAAGAGGGAGCTGCAGACGGTGCTTGGGAT
____________________________________________________________
consensus AGGCACATGATTGCCCCTGCAATGTCCAGGAAAGAGGGAGCTGCAGACGGTGCTTGGGAT
. : . : . : . : . : . :
rJMSF005E06+ GATTGAAAATCAAGAGCTGCAGAGACCCTTTCCCANTCATCTGAGTTTGAGTCTTATGCT
rJMSF045L16+ GATTGAAAATCAAGAGCTGCAGAGACCCTTTCCCACTCATCTGAGTTTGAGTCTTATGCT
rJMSF026N10+ GATTGAAAATCAAGAGCTGCAGAGACCCTTTCCCACTCATCTGAGTTTGAGTCTTATGCT
____________________________________________________________
consensus GATTGAAAATCAAGAGCTGCAGAGACCCTTTCCCACTCATCTGAGTTTGAGTCTTATGCT
. : . : . : . : . : . :
rJMSF005E06+ GCACATTTAGTACCTTGTGAATGGAGAAAGCAGCCAGTCATTCACAGCCAAGTGTGCTCC
rJMSF045L16+ GCACATTTAGTACCTTGTGAATGGAGAAAGCAGCCAGTCATTCACAGCCAAGTGTGCTCC
rJMSF026N10+ GCACATTTAGTACCTTGTGAATGGAGAAAGCAGCCAGTCATTCACAGCCAAGTGTGCTCC
____________________________________________________________
consensus GCACATTTAGTACCTTGTGAATGGAGAAAGCAGCCAGTCATTCACAGCCAAGTGTGCTCC
. : . : . : . : . : . :
rJMSF005E06+ AAAAAGGCTAGAAACTAGCTTTCCTAGCATGTGTACATTCTCCCTTCCATAGTTATTCCT
rJMSF045L16+ AAAAAGGCTAGAAACTAGCTTTCCTAGCATGTGTACATTCTCCCTTCCATAGTTATTCCT
rJMSF026N10+ AAAAAGGCTAGAAACTAGCTTTCCTAGCATGTGTACATTCTCCCTTCCATAGTTATTCCT
____________________________________________________________
consensus AAAAAGGCTAGAAACTAGCTTTCCTAGCATGTGTACATTCTCCCTTCCATAGTTATTCCT
. : . : . : . : . : . :
rJMSF005E06+ GCTATTGATTTCAGGTCTTNCACACAGTTGTCCNTGTNTTCNGTAGCACCTTTGCTAGCA
rJMSF045L16+ -CTATTGATTTCAGGTCTTACACACAGTTGTCCTTGTTTTCTGTAGCACCTTTGCTAGCA
rJMSF026N10+ -CTATTGATTTCAGGTCTTACACACAGTTGTCCTTGTTTTCTGTAGCACCTTTGCTAGCA
____________________________________________________________
consensus -CTATTGATTTCAGGTCTTACACACAGTTGTCCTTGTTTTCTGTAGCACCTTTGCTAGCA
. : . : . : . : . : . :
rJMSF005E06+ CAGTTAGATCATTTAGATGTCCGTCTGGGATATTTTCGTANNTATGGGNTNGTTAGNGAA
rJMSF045L16+ CA-TTAGATCATTTAGATGTCCGTCTTTGATATTTTCGTATTTATGGGTTTGTTAGTGAA
rJMSF026N10+ CA-TTAGATCATTTAGATGTCCGTCTTTGATATTTTCGTATTTATGGGTTTGTTAGTGAA
____________________________________________________________
consensus CA-TTAGATCATTTAGATGTCCGTCTTTGATATTTTCGTATTTATGGGTTTGTTAGTGAA
. : . : . : . : . : . :
rJMSF005E06+ TGAGGCAGCAGTACTATAGTATNGNACTATTGTGTAACAAT
rJMSF045L16+ TGAGGCAGCAGTACTATAGTATTGTACTATTGTGTAACAATTTACTCTGCTCTGTCTGC
rJMSF026N10+ TGAGGCAGCAGTACTATAGTATTGTACTATTGTGTAACAATTTACTCTGCTCTGTCTGCT
____________________________________________________________
consensus TGAGGCAGCAGTACTATAGTATTGTACTATTGTGTAACAATTTACTCTGCTCTGTCTGCT