| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF005J03 | Sequence | 497 | 008791 (6) | emb|CDP05851.1| | 1e-25 | unnamed protein product [Coffea canephora] | 713 | 012639 (5) | gb|EYU19163.1| | 1e-137 | hypothetical protein MIMGU_mgv1a002305mg [Erythranthe guttata] |
| JMFF012D04 | Sequence | 554 | 008791 (6) | emb|CDP05851.1| | 9e-38 | unnamed protein product [Coffea canephora] | 802 | 012639 (5) | ref|XP_011095264.1| | 2e-139 | PREDICTED: cyclic nucleotide-gated ion channel 4 [Sesamum indicum] |
| JMSF012D16 | Sequence | 358 | 012639 (5) | gb|EPS70503.1| | 3e-53 | hypothetical protein M569_04242, partial [Genlisea aurea] | |||||
| JMSF026I12 | Sequence | 673 | 008791 (6) | emb|CDP05851.1| | 5e-51 | unnamed protein product [Coffea canephora] | 810 | 012639 (5) | ref|XP_011095264.1| | 2e-159 | PREDICTED: cyclic nucleotide-gated ion channel 4 [Sesamum indicum] |
| JMSF027D11 | Sequence | 666 | 008791 (6) | emb|CDP05851.1| | 3e-71 | unnamed protein product [Coffea canephora] | 770 | 012639 (5) | ref|XP_011095264.1| | 7e-161 | PREDICTED: cyclic nucleotide-gated ion channel 4 [Sesamum indicum] |
This contig is upended
. : . : . : . : . : . :
rJMSF027D11+ GGCAGAGAGTGAGAAACTACGAGCGGCAGC
rJMFF012D04+ TCCGGCAGAGAGTGAGAAACTACGAGCGGCAGC
rJMSF012D16+ GGCAGAGAGTGAGGAANTACGAGCGGACGC
rJMSF026I12+ GGCAGAGAGTGAGAAANTACGAGCGGCAGC
____________________________________________________________
consensus TCCGGCAGAGAGTGAGAAACTACGAGCGGCAGC
. : . : . : . : . : . :
rJMSF027D11+ GCTGGGCGGCAATGCGCGGCGTAGATGAATGTCAAATGATCCGAAACCT-CCCTGAAGGT
rJMFF012D04+ GCTGGGCGGCAATGCGCGGCGTAGATGAATGTCAAATGATCCGAAACCTCCCCTGAAGGT
rJMSF012D16+ GCTGGGCGGCGATGCGCGGCGTCGATGAGTGCCAAATTATCCGAAATCT-GCCGGAAGGC
rJMSF026I12+ GCTGGGCGGCAATGCGCGGCGTAGATGAATGTCAAATGATCCGAAACCT-CCCTGAAGGT
____________________________________________________________
consensus GCTGGGCGGCAATGCGCGGCGTAGATGAATGTCAAATGATCCGAAACCT-CCCTGAAGGT
. : . : . : . : . : . :
rJMSF027D11+ CTTAGGAGAGACATCAAATATCATCTGTGTTTGGACTTGGTTAGACAGGTGCCTCTATTT
rJMFF012D04+ CTTAGGAGAGACATCAAATATCATCTGTGTTTGGACTTGGTTAGACAGGTGCCTCTATTT
rJMFF005J03+ CTTAGGAGAGACATCAAATATCATCTGTGTTTGGACTTGGTTAGACAGGTGCCTCTATTT
rJMSF012D16+ CTCCGGAGAGACATCAAATATCATCTCTGCTTGGACTTGGTTAGACAGGTACCGTTGTTT
rJMSF026I12+ CTTAGGAGAGACATCAAATATCATCTGTGTTTGGACTTGGTTAGACAGGTGCCTCTATTT
____________________________________________________________
consensus CTTAGGAGAGACATCAAATATCATCTGTGTTTGGACTTGGTTAGACAGGTGCCTCTATTT
. : . : . : . : . : . :
rJMSF027D11+ CAACATATGGATAATTTGGTCCTGGAAAACATATGTGACAGGGTGAAATCCCTTATATTT
rJMFF012D04+ CAACATATGGATAATTTGGTCCTGGAAAACATATGTGACAGGGTGAAATCCCTTATATTT
rJMFF005J03+ CAACATATGGATAATTTGGTCCTGGAAAACATATGTGACAGGGTGAAATCCCTTATATTT
rJMSF012D16+ CAGCATATGGATAGTTTGGTCCTCGAGAACATATGTGATCGTGTGAAATCTCTTATATTT
rJMSF026I12+ CAACATATGGATAATTTGGTCCTGGAAAACATATGTGACAGGGTGAAATCCCTTATATTT
____________________________________________________________
consensus CAACATATGGATAATTTGGTCCTGGAAAACATATGTGACAGGGTGAAATCCCTTATATTT
. : . : . : . : . : . :
rJMSF027D11+ ACGAAGGGAGAAACTATAACAAGAGAGGGTGATCCAGTGCAGAGAATGTTGTTTATAGTA
rJMFF012D04+ ACGAAGGGAGAAACTATAACAAGAGAGGGTGATCCAGTGCAGAGAATGTTGTTTATAGTA
rJMFF005J03+ ACGAAGGGAGAAACTATAACAAGAGAGGGTGATCCAGTGCAGAGAATGTTGTTTATAGTA
rJMSF012D16+ ACAAAAGGAGAAACGATAACCAGAGAGGGAGATCCGGTGAAGAGAATGTTGTTTATAGT
rJMSF026I12+ ACGAAGGGAGAAACTATAACAAGAGAGGGTGATCCAGTGCAGAGAATGTTGTTTATAGTA
____________________________________________________________
consensus ACGAAGGGAGAAACTATAACAAGAGAGGGTGATCCAGTGCAGAGAATGTTGTTTATAGTA
. : . : . : . : . : . :
rJMSF027D11+ AGAGGTCATCTCCAAAGCAGCCAAGTACTACGAGAAGGAGTAAAAAGTTGCTGCATGTTA
rJMFF012D04+ AGAGGTCATCTCCAAAGCAGCCAAGTACTACGAGAAGGAGTAAAAAGTTGCTGCATGTTA
rJMFF005J03+ AGAGGTCATCTCCAAAGCAGCCAAGTACTACGAGAAGGAGTAAAAAGTTGCTGCATGTTA
rJMSF026I12+ AGAGGTCATCTCCAAAGCAGCCAAGTACTACGAGAAGGAGTAAAAAGTTGCTGCATGTTA
____________________________________________________________
consensus AGAGGTCATCTCCAAAGCAGCCAAGTACTACGAGAAGGAGTAAAAAGTTGCTGCATGTTA
. : . : . : . : . : . :
rJMSF027D11+ GGCCCGGGAAACTTCAGCGGCGACGAGCTCCTCTCATGGTGTCTCCGGCGGCCCTTTGTG
rJMFF012D04+ GGCCCGGGAAACTTCAGCGGCGACGAGCTCCTCTCATGGTGTCTCCGGCGGCCCTTTGTG
rJMFF005J03+ GGCCCGGGAAACTTCAGCGGCGACGAGCTCCTCTCATGGTGTCTCCGGCGGCCCTTTGTG
rJMSF026I12+ GGCCCGGGAAACTTCAGCGGCGACGAGCTCCTCTCATGGTGTCTCCGGCGGCCCTTTGTG
____________________________________________________________
consensus GGCCCGGGAAACTTCAGCGGCGACGAGCTCCTCTCATGGTGTCTCCGGCGGCCCTTTGTG
. : . : . : . : . : . :
rJMSF027D11+ GAGCGGCTACCGCCGTCCTCCTCCAGCCTAGTGACGCTGGAAGCGACGGAGGCATTCGGG
rJMFF012D04+ GAGCGGCTACCGCCGTCCTCCTCCAGCCTAGTGACGCTGGAAGCGACGGAGGCATTCGGG
rJMFF005J03+ GAGCGGCTACCGCCGTCCTCCTCCAGCCTAGTGACGCTGGAAGCGACGGAGGCATTCGGG
rJMSF026I12+ GAGCGGCTACCGCCGTCCTCCTCCAGCCTAGTGACGCTGGAAGCGACGGAGGCATTCGGG
____________________________________________________________
consensus GAGCGGCTACCGCCGTCCTCCTCCAGCCTAGTGACGCTGGAAGCGACGGAGGCATTCGGG
. : . : . : . : . : . :
rJMSF027D11+ CTGGAAGCCAAAGACGTGAAGTACGTAACGCAGCATTTCCGGTACACATTTGTGAACGAG
rJMFF012D04+ CTGGAAGCCAAAGACGTGAAGTACGTAACGCAGCATTTCCGGTACACATTTGTGAACGAG
rJMFF005J03+ CTGGAAGCCAAAGACGTGAAGTACGTAACGCAGCATTTCCGGTACACATTTGTGAACGAG
rJMSF026I12+ CTGGAAGCCAAAGACGTGAAGTACGTAACGCAGCATTTCCGGTACACATTTGTGAACGAG
____________________________________________________________
consensus CTGGAAGCCAAAGACGTGAAGTACGTAACGCAGCATTTCCGGTACACATTTGTGAACGAG
. : . : . : . : . : . :
rJMSF027D11+ AAAGTGAAGAGAAGCGCAAGGTATTACTCTCCCGGGTGGAGAACATGGGCGGCGGTGGCG
rJMFF012D04+ AAAGTGAAGAGAAGCGCAAGGTATTACTCTCCCGGGTGGAGAACATGGGCGGCGGTGGCG
rJMFF005J03+ AAAGTGAAGAGAAGCGCAAGGTATTACTCTCCCGGGTGGAGAACATGGGCGGCGGTGGCG
rJMSF026I12+ AAAGTGAAGAGAAGCGCAAGGTATTACTCTCCCGGGTGGAGAACATGGGCGGCGGTGGCG
____________________________________________________________
consensus AAAGTGAAGAGAAGCGCAAGGTATTACTCTCCCGGGTGGAGAACATGGGCGGCGGTGGCG
. : . : . : . : . : . :
rJMSF027D11+ ATTCAGCTGGCCTGGAGGAGATACAGGCACCGCCTAACGCTCACTTCGCTCTCCTTCATA
rJMFF012D04+ ATTCAGCTGGCCTGGAAGAGATACAGGCACCGCCTAACGCTCACTTCGCTCTCCTTCATA
rJMFF005J03+ ATTCAGCTGGCCTGGAGGAGATACAGGCACCGCCTAACGCTCACTTCGCTCTCCTTCATA
rJMSF026I12+ ATTCAGCTGGCCTGGAGGAGATACAGGCACCGCCTAACGCTCACTTCGCTCTCCTTCATA
____________________________________________________________
consensus ATTCAGCTGGCCTGGAGGAGATACAGGCACCGCCTAACGCTCACTTCGCTCTCCTTCATA
. : . : . : . : . : . :
rJMSF027D11+ AGGCCCAGGAGACCGCGGTCTAGATCTTCTTCTCTCGGAGAAGACAGGCTCAGGCTTTAT
rJMFF012D04+ AGGCCCAGGAGACCGCGGTCTAGATCTTCTTCTCTCGGAGAAGACAGGCTCAGGCTTTAT
rJMFF005J03+ AGGCCCAGGAGACCGCGGTCTAGATCTTCTTCTCTCGGAGAAGACAGGCTCAGGCTTTAT
rJMSF026I12+ AGGCCCAGGAGACCGCGGTCTAGATCTTCTTCTCTCGGAGAAGACAGGCTCAGGCTTTAT
____________________________________________________________
consensus AGGCCCAGGAGACCGCGGTCTAGATCTTCTTCTCTCGGAGAAGACAGGCTCAGGCTTTAT
. : . : . : . : . : . :
rJMSF027D11+ ACAGCGTTGTTGACATCCCCAAAACCTAATCAGGATGATTTTGACTTCTAAGGATCTAAT
rJMFF012D04+ ACAGCGTTGTTGACATCCCCAAAACCTAATCAGGATGATTTTGACTTCTAAGGATCTAAT
rJMFF005J03+ ACAGCGTTGTTGACATCCCCAAAACCTAATCAGGATGATTTTGACTTCTAAGGATCTAAT
rJMSF026I12+ ACAGCGTTGTTGACATCCCCAAAACCTAATCAGGATGATTTTGACTTCTAAGGATCTAAT
____________________________________________________________
consensus ACAGCGTTGTTGACATCCCCAAAACCTAATCAGGATGATTTTGACTTCTAAGGATCTAAT
. : . : . : . : . : . :
rJMSF027D11+ TATATTGCTTAGTTACGT
rJMFF012D04+ TATATTGCTTAGTTACGTTGTACGTACGCATTGCATGTAATTAATACGA
rJMFF005J03+ TATATTGCTTAGTTACGTTGTACGTACGCATTGCATGTAATTAATACGA
rJMSF026I12+ TATATTGCTTAGTTACGTTGTACGTACGCATTGCATGTAATTAATACGATTTTATGTTTT
____________________________________________________________
consensus TATATTGCTTAGTTACGTTGTACGTACGCATTGCATGTAATTAATACGATTTTATGTTTT