Contig 012636:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF017G24-                                      GGACCATCCGACTTCTCCTGCTGCGTTCTCCTC
JMSF052E06-                                               GACTTCTCCTGCTGCGTTCTCCTC
                      ____________________________________________________________
consensus                                        GGACCATCCGACTTCTCCTGCTGCGTTCTCCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF017G24-           CTTCTCTCTAACCTTGTCTGAAACTGAAGCTATTCTACTCCATTTGCCTGCTGCGCGGTC
JMSF052E06-           CTTCTCTCTAACCTTGTCTGAAACTGAAGCTATTCTACTCCATTTGCCTGCTGCGCGGTC
                      ____________________________________________________________
consensus             CTTCTCTCTAACCTTGTCTGAAACTGAAGCTATTCTACTCCATTTGCCTGCTGCGCGGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF017G24-           CTCCATCTCTCTAACCTTGTCTCATGG                                 
JMSF052E06-           CTCCATCTCTCTAACCTTGTCTCATGGTATTCTTCTCCTTCTGCCTGCCTACTGCGCTCT
                      ____________________________________________________________
consensus             CTCCATCTCTCTAACCTTGTCTCATGGTATTCTTCTCCTTCTGCCTGCCTACTGCGCTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052E06-           CTTATCATTTTTGGTTTTAAATGTTATAGTATGATTGTTTAATTTTGGTCCGTACGTCAT
                      ____________________________________________________________
consensus             CTTATCATTTTTGGTTTTAAATGTTATAGTATGATTGTTTAATTTTGGTCCGTACGTCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052E06-           TATAGAATCATCGGTATTATTTTTCATGTTTTTCCCTCGATTTAATTTTCTTTAGTTCTA
rJMSF052E06+                                                             TTAGNTCTA
                      ____________________________________________________________
consensus             TATAGAATCATCGGTATTATTTTTCATGTTTTTCCCTCGATTTAATTTTCTTTAGTTCTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052E06-           TGATTCTATAACATAGAAGTTATAGTAATATCTGATTATGTAAAGGCTCTATGATTCGAT
rJMSF052E06+          TGATTCTATAACATAGAAGTTATAGTAATATCTGATTATGTAAAGGCTCTATGATTCGAT
                      ____________________________________________________________
consensus             TGATTCTATAACATAGAAGTTATAGTAATATCTGATTATGTAAAGGCTCTATGATTCGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052E06-           ATTGTTTGTATACTTGCATGTCTACATATTTAATTTTGTTTGTATAAATCTTGATTCTTG
rJMSF052E06+          ATTGTTTGTATACTTGCATGTCTACATATTTAATTTTGTTTGTATAAATCTTGATTCTTG
                      ____________________________________________________________
consensus             ATTGTTTGTATACTTGCATGTCTACATATTTAATTTTGTTTGTATAAATCTTGATTCTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052E06-           ATTGTATTTTTCTGTAAAAGTTGACCATCGATTCAATTGATAATTTGATATAGATGCAAA
rJMSF052E06+          ATTGTATTTTTCTGTAAAAGTTGACCATCGATTCAATTGATAATTTGATATAGATGCAAA
                      ____________________________________________________________
consensus             ATTGTATTTTTCTGTAAAAGTTGACCATCGATTCAATTGATAATTTGATATAGATGCAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052E06-           GTAAGTCCTTGTATTCTAATTTGAGCTCTCAGATGTTAATATGTATATTGCACATGCAGC
rJMSF017G24+                                     CTCAGATGTTAATATGTATATTGCACATGCAGC
rJMSF052E06+          GTAAGTCCTTGTATTCTAATTTGAGCTCTCAGATGTTAATATGTATATTGCACATGCAGC
rJMSF026B24+                                     CTCAGATGTTAATATGTATATTGCACATGCAGC
                      ____________________________________________________________
consensus             GTAAGTCCTTGTATTCTAATTTGAGCTCTCAGATGTTAATATGTATATTGCACATGCAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052E06-           TGAAAAATATCCATCATTTTTTCAATTTTATGTATTTTGATCTCATTTTCTGTTTAAAAT
rJMSF017G24+          TGAAAAATATCCATCATTTTTTCAATTTTATGTATTTTGATCTCATTTTCTGTTTAAAAT
rJMSF052E06+          TGAAAAATATCCATCATTTTTTCAATTTTATGTATTTTGATCTCATTTTCTGTTTAAAAT
rJMSF026B24+          TGAAAAATATCCATCATTTTTTCAATTTTATGTATTTTGATCTCATTTTCTGTTTAAAAT
                      ____________________________________________________________
consensus             TGAAAAATATCCATCATTTTTTCAATTTTATGTATTTTGATCTCATTTTCTGTTTAAAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052E06-           GGTAGTATATGCAACCTAATCTGTAAATGAAGTCAGATTTCTTCACATAAACAGAAGAAA
rJMSF017G24+          GGTAGTATATGCAACCTAATCTGTAAATGAAGTCAGATTTCTTCACATAAACAGAAGAAA
rJMSF052E06+          GGTAGTATATGCAACCTAATCTGTAAATGAAGTCAGATTTCTTCACATAAACAGAAGAAA
rJMSF026B24+          GGTAGTATATGCAACCTAATCTGTAAATGAAGTCAGATTTCTTCACATAAACAGAAGAAA
                      ____________________________________________________________
consensus             GGTAGTATATGCAACCTAATCTGTAAATGAAGTCAGATTTCTTCACATAAACAGAAGAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052E06-           AAGAGCTGAAGATT                                              
rJMSF017G24+          AAGAGCTGAAGATTTAAAAATTAGATGGTTATGTCATAAAGATAAGCCTCAATTTTGGGT
rJMSF052E06+          AAGAGCTGAAGATTTAAAAATTAGATGGTTATGTCATAAAGATAAGCCTCAATTTTGGGT
rJMSF026B24+          AAGAGCTGAAGATTTAAAAATTAGATGGTTATGTCATAAAGATAAGCCTCAATTTTGGGT
                      ____________________________________________________________
consensus             AAGAGCTGAAGATTTAAAAATTAGATGGTTATGTCATAAAGATAAGCCTCAATTTTGGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF017G24+          ATTTTTTTAAAATGCAGAGATTTTTAATTGTGACATATAATGATTTAGTTCTATGAGGTA
rJMSF052E06+          ATTTTTTTAAAATGCAGAGATTTTTAATTGTGACATATAATGATTTAGTTCTATGAGGTA
rJMSF026B24+          ATTTTTTTAAAATGCAGAGATTTTTAATTGTGACATATAATGATTTAGTTCTATGAGGTA
                      ____________________________________________________________
consensus             ATTTTTTTAAAATGCAGAGATTTTTAATTGTGACATATAATGATTTAGTTCTATGAGGTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF017G24+          TGGATAAAGAAAAAAAATCAACATGTGAAGGGATGGGGTTGAGAAGAATAAAGAAATTGA
rJMSF052E06+          TGGATAAAGAAAAAAAATCAACATGTGAAGGGATGGGGTTGAGAAGAATAAAGAAATTGA
rJMSF026B24+          TGGATAAAGAAAAAAAATCAACATGTGAAGGGATGGGGTTGAGAAGAATAAAGAAATTGA
                      ____________________________________________________________
consensus             TGGATAAAGAAAAAAAATCAACATGTGAAGGGATGGGGTTGAGAAGAATAAAGAAATTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF017G24+          CGGTATGGATTTAACTTACCTTTTCATCTGATATTTGCTTCCTCTTGCTTCGTACTCTTG
rJMSF052E06+          CGGTATGGATTTAACTTACCTTTTCATCTGATATTTGCTTCCTCTTGCTTCGTACTCTTG
rJMSF026B24+          CGGTATGGATTTAACTTACCTTTTCATCTGATATTTGCTTCCTCTTGCTTCGTACTCTTG
                      ____________________________________________________________
consensus             CGGTATGGATTTAACTTACCTTTTCATCTGATATTTGCTTCCTCTTGCTTCGTACTCTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF017G24+          TTATTTTGAACCATGATAACCAACTCCTATGTGTGTACTTTCGAACTTATTTGGGTTTGG
rJMSF052E06+          TTATTTTGAACCATGATAACCAACTCCTATGTGTGTACTTTCGAACTTATTTGGGTTTGG
rJMSF026B24+          TTATTTTGAACCATGATAACCAACTCCTATGTGTGTACTTTCGAACTTATTTGGGTTTGG
                      ____________________________________________________________
consensus             TTATTTTGAACCATGATAACCAACTCCTATGTGTGTACTTTCGAACTTATTTGGGTTTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF017G24+          ATTTTATTGCTATTATGATCATATATTACTGCAGAAGTAAGATTAAAATGAAATCTTGTA
rJMSF052E06+          ATTTTATTGCTATTATGATCATATATTACTGCAGAAGTAAGATTAAAATGAAATCTTGTA
rJMSF026B24+          ATTTTATTGCTATTATGATCATATATTACTGCAGAAGTAAGATTAAAATGAAATCTTGTA
                      ____________________________________________________________
consensus             ATTTTATTGCTATTATGATCATATATTACTGCAGAAGTAAGATTAAAATGAAATCTTGTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF017G24+          CAATTATATGTTACTGCAGAAGTGCAGATAACAAAAGATTTATGTTGTGAGCAAATTAGG
rJMSF052E06+          CAATTATATGTTACTGCAGAAGTGCAGATAACAAAAGATTTATGTTGTGAGCAAATTAGG
rJMSF026B24+          CAATTATATGTTACTGCAGAAGTGCAGATAACAAAAGATTTATGTTGTGAGCAAATTAGG
                      ____________________________________________________________
consensus             CAATTATATGTTACTGCAGAAGTGCAGATAACAAAAGATTTATGTTGTGAGCAAATTAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF017G24+          GAAAAAAAGCATACAATAAAACAGTGATGTTTATGTGTAGATAGATTCTAAACTTTCATC
rJMSF052E06+          GAAAAAAAGCATACAATAAAACAGTGATGTTTATGTGTAGATAGATTCTAAACTTTCATC
rJMSF026B24+          GAAAAAAAGCATACAATAAAACAGTGATGTTTATGTGTAGATAGATTCTAAACTTTCATC
                      ____________________________________________________________
consensus             GAAAAAAAGCATACAATAAAACAGTGATGTTTATGTGTAGATAGATTCTAAACTTTCATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF017G24+          AACCAGTGTGATTTTCATATGAGATGCTATCAGAATTCTATTTTTTT             
rJMSF052E06+          AA-CAGTGTGATTTTCATATGAGATGCTATCAGAATTCTATTTTTTT             
rJMSF026B24+          AA-CAGTGTGATTTTCATATGAGATGCTATCAGAATTCTATTTTTTTCCAAGAGAAGGTG
                      ____________________________________________________________
consensus             AA-CAGTGTGATTTTCATATGAGATGCTATCAGAATTCTATTTTTTTCCAAGAGAAGGTG