Contig 012630:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF025F04Sequence548010721 (5)491012630 (2)ref|XP_002317566.2|2e-10hypothetical protein POPTR_0011s13610g [Populus trichocarpa] gb|EEE98178.2| hypo
JMSF051N12Sequence611010721 (5)775012630 (2)ref|XP_007021082.1|5e-43Autophagy 18 F isoform 4 [Theobroma cacao] gb|EOY12607.1| Autophagy 18 F isoform

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF051N12+ AGGAANGACAGCATATGTATATNTCAGNAGCAGAGCTGCACATGCATCAACCTGTGAC
                      ____________________________________________________________
consensus AGGAANGACAGCATATGTATATNTCAGNAGCAGAGCTGCACATGCATCAACCTGTGAC
 
. : . : . : . : . : . :
rJMSF051N12+ TCCATTGTGGGCAAGACCTGAGATATACTTCCAGTCCATTTTGTTCAATGACATTAGCAT
                      ____________________________________________________________
consensus TCCATTGTGGGCAAGACCTGAGATATACTTCCAGTCCATTTTGTTCAATGACATTAGCAT
 
. : . : . : . : . : . :
rJMSF051N12+ GGATGCCAATGGTGCTTGTGGAGGAGAGATTGAGATTGAAAGGATTCCCACACGTACAGT
                      ____________________________________________________________
consensus GGATGCCAATGGTGCTTGTGGAGGAGAGATTGAGATTGAAAGGATTCCCACACGTACAGT
 
. : . : . : . : . : . :
rJMSF051N12+ TGAAGCCAGGTCTAAGGATCTAGTTCCAGTTTATAATTATCTTCAAGCACCCAAGATACA
                      ____________________________________________________________
consensus TGAAGCCAGGTCTAAGGATCTAGTTCCAGTTTATAATTATCTTCAAGCACCCAAGATACA
 
. : . : . : . : . : . :
rJMSF051N12+ GCAACAAAGGATGTTTGGCAACAATGATCAACTATTGCATATTCAAAGGTCTGAGGTATC
                      ____________________________________________________________
consensus GCAACAAAGGATGTTTGGCAACAATGATCAACTATTGCATATTCAAAGGTCTGAGGTATC
 
. : . : . : . : . : . :
rJMSF051N12+ TGGGAAAGACAATCCTATCAATAGTAATCTTGGTTATCCTCACTGCACGACTAATGGATG
rJMSF025F04+ ACTAATGGATG
                      ____________________________________________________________
consensus TGGGAAAGACAATCCTATCAATAGTAATCTTGGTTATCCTCACTGCACGACTAATGGATG
 
. : . : . : . : . : . :
rJMSF051N12+ CATTGAACCACCATATAATGGAATAGAAGAAAATGGAAGCAATGGTTGCTGGATGGCACC
rJMSF025F04+ CATTGAACCNCCATATAATGGAATAGAAGAAAATGGAAGCAATGGNTGCTGGATGGCNCC
                      ____________________________________________________________
consensus CATTGAACCACCATATAATGGAATAGAAGAAAATGGAAGCAATGGTTGCTGGATGGCACC
 
. : . : . : . : . : . :
rJMSF051N12+ AGAAACAACTAAGGACATTGTATATAATAATGACAGCCCAAAAGCAAACACTCAGCTAGG
rJMSF025F04+ AGAAACAACTAAGGACATTGTATATAATAATGNCAGCCCAAAAGCAAACACTCAGCTAGG
                      ____________________________________________________________
consensus AGAAACAACTAAGGACATTGTATATAATAATGACAGCCCAAAAGCAAACACTCAGCTAGG
 
. : . : . : . : . : . :
rJMSF051N12+ GTTTGTAAATAATAGTCAGATCTCCACCCAAGCTAAGTTTGTAAATAATGACATAGATGG
rJMSF025F04+ GTTTGTAAATAATAGTCAGATCTCCACCCAAGNTAAGTTTGTAAATAATGACATAGATGG
                      ____________________________________________________________
consensus GTTTGTAAATAATAGTCAGATCTCCACCCAAGCTAAGTTTGTAAATAATGACATAGATGG
 
. : . : . : . : . : . :
rJMSF051N12+ ACTGAAAATGAAGAATCATTTTGAAGGTGAAGTTGAAGAGTTTGACTGAAGGT
rJMSF025F04+ ACTGAAAATGAAGAATCATTTTGAAGGTGAAGTTGAAGAGTTTGACTGAAGGTGATGCAG
                      ____________________________________________________________
consensus ACTGAAAATGAAGAATCATTTTGAAGGTGAAGTTGAAGAGTTTGACTGAAGGTGATGCAG
 
. : . : . : . : . : . :
rJMSF025F04+ TTGAATGTTGTGGAACTTGTTGAGTGTTGATCTATTTCGTTTTGTTCGTGGGAGGGTTCC
                      ____________________________________________________________
consensus TTGAATGTTGTGGAACTTGTTGAGTGTTGATCTATTTCGTTTTGTTCGTGGGAGGGTTCC
 
. : . : . : . : . : . :
rJMSF025F04+ NAAAGTGTGNATNTGGTGGGTGNATTTATGNATAGAAGGAAGGATAGGTATAGTGTCTNT
                      ____________________________________________________________
consensus NAAAGTGTGNATNTGGTGGGTGNATTTATGNATAGAAGGAAGGATAGGTATAGTGTCTNT
 
. : . : . : . : . : . :
rJMSF025F04+ CTANTGTGGACGCAGAATGCGCCTTCAGTATTGTAAATAATAAGATGGTGANACCAATGT
                      ____________________________________________________________
consensus CTANTGTGGACGCAGAATGCGCCTTCAGTATTGTAAATAATAAGATGGTGANACCAATGT
 
. : . : . : . : . : . :
rJMSF025F04+ TAGCAGTTGACATGTATATAATACTTAGCGTCCTCTCTACAACATTTNGTTGTGAGCTCT
                      ____________________________________________________________
consensus TAGCAGTTGACATGTATATAATACTTAGCGTCCTCTCTACAACATTTNGTTGTGAGCTCT