Contig 012630:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF025F04Sequence548010721 (5)491012630 (2)ref|XP_002317566.2|2e-10hypothetical protein POPTR_0011s13610g [Populus trichocarpa] gb|EEE98178.2| hypo
JMSF051N12Sequence611010721 (5)775012630 (2)ref|XP_007021082.1|5e-43Autophagy 18 F isoform 4 [Theobroma cacao] gb|EOY12607.1| Autophagy 18 F isoform

Alignment

This contig is upended


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rJMSF051N12+            AGGAANGACAGCATATGTATATNTCAGNAGCAGAGCTGCACATGCATCAACCTGTGAC
                      ____________________________________________________________
consensus               AGGAANGACAGCATATGTATATNTCAGNAGCAGAGCTGCACATGCATCAACCTGTGAC
 
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rJMSF051N12+          TCCATTGTGGGCAAGACCTGAGATATACTTCCAGTCCATTTTGTTCAATGACATTAGCAT
                      ____________________________________________________________
consensus             TCCATTGTGGGCAAGACCTGAGATATACTTCCAGTCCATTTTGTTCAATGACATTAGCAT
 
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rJMSF051N12+          GGATGCCAATGGTGCTTGTGGAGGAGAGATTGAGATTGAAAGGATTCCCACACGTACAGT
                      ____________________________________________________________
consensus             GGATGCCAATGGTGCTTGTGGAGGAGAGATTGAGATTGAAAGGATTCCCACACGTACAGT
 
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rJMSF051N12+          TGAAGCCAGGTCTAAGGATCTAGTTCCAGTTTATAATTATCTTCAAGCACCCAAGATACA
                      ____________________________________________________________
consensus             TGAAGCCAGGTCTAAGGATCTAGTTCCAGTTTATAATTATCTTCAAGCACCCAAGATACA
 
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rJMSF051N12+          GCAACAAAGGATGTTTGGCAACAATGATCAACTATTGCATATTCAAAGGTCTGAGGTATC
                      ____________________________________________________________
consensus             GCAACAAAGGATGTTTGGCAACAATGATCAACTATTGCATATTCAAAGGTCTGAGGTATC
 
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rJMSF051N12+          TGGGAAAGACAATCCTATCAATAGTAATCTTGGTTATCCTCACTGCACGACTAATGGATG
rJMSF025F04+                                                           ACTAATGGATG
                      ____________________________________________________________
consensus             TGGGAAAGACAATCCTATCAATAGTAATCTTGGTTATCCTCACTGCACGACTAATGGATG
 
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rJMSF051N12+          CATTGAACCACCATATAATGGAATAGAAGAAAATGGAAGCAATGGTTGCTGGATGGCACC
rJMSF025F04+          CATTGAACCNCCATATAATGGAATAGAAGAAAATGGAAGCAATGGNTGCTGGATGGCNCC
                      ____________________________________________________________
consensus             CATTGAACCACCATATAATGGAATAGAAGAAAATGGAAGCAATGGTTGCTGGATGGCACC
 
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rJMSF051N12+          AGAAACAACTAAGGACATTGTATATAATAATGACAGCCCAAAAGCAAACACTCAGCTAGG
rJMSF025F04+          AGAAACAACTAAGGACATTGTATATAATAATGNCAGCCCAAAAGCAAACACTCAGCTAGG
                      ____________________________________________________________
consensus             AGAAACAACTAAGGACATTGTATATAATAATGACAGCCCAAAAGCAAACACTCAGCTAGG
 
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rJMSF051N12+          GTTTGTAAATAATAGTCAGATCTCCACCCAAGCTAAGTTTGTAAATAATGACATAGATGG
rJMSF025F04+          GTTTGTAAATAATAGTCAGATCTCCACCCAAGNTAAGTTTGTAAATAATGACATAGATGG
                      ____________________________________________________________
consensus             GTTTGTAAATAATAGTCAGATCTCCACCCAAGCTAAGTTTGTAAATAATGACATAGATGG
 
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rJMSF051N12+          ACTGAAAATGAAGAATCATTTTGAAGGTGAAGTTGAAGAGTTTGACTGAAGGT       
rJMSF025F04+          ACTGAAAATGAAGAATCATTTTGAAGGTGAAGTTGAAGAGTTTGACTGAAGGTGATGCAG
                      ____________________________________________________________
consensus             ACTGAAAATGAAGAATCATTTTGAAGGTGAAGTTGAAGAGTTTGACTGAAGGTGATGCAG
 
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rJMSF025F04+          TTGAATGTTGTGGAACTTGTTGAGTGTTGATCTATTTCGTTTTGTTCGTGGGAGGGTTCC
                      ____________________________________________________________
consensus             TTGAATGTTGTGGAACTTGTTGAGTGTTGATCTATTTCGTTTTGTTCGTGGGAGGGTTCC
 
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rJMSF025F04+          NAAAGTGTGNATNTGGTGGGTGNATTTATGNATAGAAGGAAGGATAGGTATAGTGTCTNT
                      ____________________________________________________________
consensus             NAAAGTGTGNATNTGGTGGGTGNATTTATGNATAGAAGGAAGGATAGGTATAGTGTCTNT
 
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rJMSF025F04+          CTANTGTGGACGCAGAATGCGCCTTCAGTATTGTAAATAATAAGATGGTGANACCAATGT
                      ____________________________________________________________
consensus             CTANTGTGGACGCAGAATGCGCCTTCAGTATTGTAAATAATAAGATGGTGANACCAATGT
 
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rJMSF025F04+          TAGCAGTTGACATGTATATAATACTTAGCGTCCTCTCTACAACATTTNGTTGTGAGCTCT
                      ____________________________________________________________
consensus             TAGCAGTTGACATGTATATAATACTTAGCGTCCTCTCTACAACATTTNGTTGTGAGCTCT