Contig 012626:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF024K07Sequence657012626 (2)ref|XP_009802675.1|1e-51PREDICTED: GATA transcription factor 12 [Nicotiana sylvestris]728012626 (2)ref|XP_009628152.1|1e-62PREDICTED: GATA transcription factor 12-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMSF024K07-                                    GAGCGGTTACTTTTTCAAATTTTGAGGCGAAATAC
                      ____________________________________________________________
consensus                                      GAGCGGTTACTTTTTCAAATTTTGAGGCGAAATAC
 
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JMSF024K07-           ATTCACATTTTCTGTAATGGAAGCACGAGAATTCGTCATTGGCGGCGGCTTTTTGGGGGC
                      ____________________________________________________________
consensus             ATTCACATTTTCTGTAATGGAAGCACGAGAATTCGTCATTGGCGGCGGCTTTTTGGGGGC
 
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JMSF024K07-           TGCCGCCGGGGAGTCACAATATGGTTGCGAAAACCGTTACCTAGTGGAACATAAGTCCGC
                      ____________________________________________________________
consensus             TGCCGCCGGGGAGTCACAATATGGTTGCGAAAACCGTTACCTAGTGGAACATAAGTCCGC
 
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JMSF024K07-           GGAGCACAGCCTCAATGCTAACAATTTCACCGTCGATGAGCTTCTCGACTTCTCAAAACA
                      ____________________________________________________________
consensus             GGAGCACAGCCTCAATGCTAACAATTTCACCGTCGATGAGCTTCTCGACTTCTCAAAACA
 
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JMSF024K07-           CGACGAGGTCACCGCCGACGATTTCTTCGACGACAGTGCTGCAGGCCGCTCCTCCACCGT
                      ____________________________________________________________
consensus             CGACGAGGTCACCGCCGACGATTTCTTCGACGACAGTGCTGCAGGCCGCTCCTCCACCGT
 
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JMSF024K07-           CGCTGCTGTCGACAGCTGTAAATCCGGCGGCCAATTCAGCGGTAATTTTAGCTGCGGTAG
                      ____________________________________________________________
consensus             CGCTGCTGTCGACAGCTGTAAATCCGGCGGCCAATTCAGCGGTAATTTTAGCTGCGGTAG
 
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JMSF024K07-           CTTCACCGACACCCCTTTCAGCACTTCCGAGCTTTGCATTCCGTATGATGATTTGGCGGA
                      ____________________________________________________________
consensus             CTTCACCGACACCCCTTTCAGCACTTCCGAGCTTTGCATTCCGTATGATGATTTGGCGGA
 
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JMSF024K07-           GCTGGAATGGTTGTCGAACTTCGTGGAGGACTCATTCTCGAGCGACGAGGTTCAAAATCT
                      ____________________________________________________________
consensus             GCTGGAATGGTTGTCGAACTTCGTGGAGGACTCATTCTCGAGCGACGAGGTTCAAAATCT
 
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JMSF024K07-           TCAGCTAATTTTGGCCACAAAAACTTCCGCCACCGCCGCTGATTCTTCCTCCTCCGCCTC
                      ____________________________________________________________
consensus             TCAGCTAATTTTGGCCACAAAAACTTCCGCCACCGCCGCTGATTCTTCCTCCTCCGCCTC
 
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JMSF024K07-           CGCCAGCGCCAATTGCAAGGAAATCGGCAACAATTATTCACTTCCGGCATTCCCTAATTC
rJMSF024K07+                                                              CCTAATTC
                      ____________________________________________________________
consensus             CGCCAGCGCCAATTGCAAGGAAATCGGCAACAATTATTCACTTCCGGCATTCCCTAATTC
 
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JMSF024K07-           CGACGTCTCAGTTCCCGGCAAAGCGCGCAGCAAACGTTCCCGCGCCGCGCCCTGGGACTG
rJMSF024K07+          NGACGTNTCAGTTCCCGGCAAAGCGCGCAGCAAACGTTCCCGCGCCGCGCCCTGGGACTG
                      ____________________________________________________________
consensus             CGACGTCTCAGTTCCCGGCAAAGCGCGCAGCAAACGTTCCCGCGCCGCGCCCTGGGACTG
 
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JMSF024K07-           GTCGTCCCGCATCCTGCTCCTT                                      
rJMSF024K07+          GTCGTCCCGCATCCTGCTCCTTTCCCCAGAGAAGTCACAGTCGGAGAGCAAGAACAACGC
                      ____________________________________________________________
consensus             GTCGTCCCGCATCCTGCTCCTTTCCCCAGAGAAGTCACAGTCGGAGAGCAAGAACAACGC
 
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rJMSF024K07+          ATCGGCTCCGAAAGCGTCGGCGGCGTCTAAAAGAAGAGAAAGCTGCAACGAGACTCAAGG
                      ____________________________________________________________
consensus             ATCGGCTCCGAAAGCGTCGGCGGCGTCTAAAAGAAGAGAAAGCTGCAACGAGACTCAAGG
 
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rJMSF024K07+          GCGGAAGTGCCTGCACTGTGCGTCTGAAAAGACGCCCCAGTGGCGGACCGGGCCAATGGG
                      ____________________________________________________________
consensus             GCGGAAGTGCCTGCACTGTGCGTCTGAAAAGACGCCCCAGTGGCGGACCGGGCCAATGGG
 
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rJMSF024K07+          GCCTAAGACGCTTTGCAACGCGTGTGGGGTCCGATACAAATCGGGGCGTCTGGTGCCCGA
                      ____________________________________________________________
consensus             GCCTAAGACGCTTTGCAACGCGTGTGGGGTCCGATACAAATCGGGGCGTCTGGTGCCCGA
 
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rJMSF024K07+          ATACCGACCCGCGGCCAGCCCCACATTCGTCTCCACCAAACACTCCAACTCCCACCGCAA
                      ____________________________________________________________
consensus             ATACCGACCCGCGGCCAGCCCCACATTCGTCTCCACCAAACACTCCAACTCCCACCGCAA
 
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rJMSF024K07+          GGTCCTGGAGCTCCGCCGCCAAAACGACCTCCACCTCCACCACCAGCAACAGTTGCTCAG
                      ____________________________________________________________
consensus             GGTCCTGGAGCTCCGCCGCCAAAACGACCTCCACCTCCACCACCAGCAACAGTTGCTCAG
 
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rJMSF024K07+          TCAAGCCTCCATCTTCGGCGGCGATGCCTACTTGCTTCACCGTCAACAATCATGCGGCCC
                      ____________________________________________________________
consensus             TCAAGCCTCCATCTTCGGCGGCGATGCCTACTTGCTTCACCGTCAACAATCATGCGGCCC
 
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rJMSF024K07+          TGACTATACGCACATGATCTAGCCCCCAATCAGCTTCCAGTACGTACATTTATGCTCCAA
                      ____________________________________________________________
consensus             TGACTATACGCACATGATCTAGCCCCCAATCAGCTTCCAGTACGTACATTTATGCTCCAA
 
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rJMSF024K07+          GTAACATTATTGAAAAAGCAACTCCATCAATTTTCCTAATTTACGATATTACTCCTATCC
                      ____________________________________________________________
consensus             GTAACATTATTGAAAAAGCAACTCCATCAATTTTCCTAATTTACGATATTACTCCTATCC
 
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rJMSF024K07+          TATCTCGAGGAAGGTGCAGTGAAGAACCAAATACAACTGAATTCAGAATTCTGTAATTCT
                      ____________________________________________________________
consensus             TATCTCGAGGAAGGTGCAGTGAAGAACCAAATACAACTGAATTCAGAATTCTGTAATTCT
 
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rJMSF024K07+          TTCGCTAATTAATAATTACGTTAAGTTTTTCTTCATGTACAACAGCGTTACTTGGATTAT
                      ____________________________________________________________
consensus             TTCGCTAATTAATAATTACGTTAAGTTTTTCTTCATGTACAACAGCGTTACTTGGATTAT