| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF024E16 | Sequence | 684 | 012624 (4) | ref|XP_009592771.1| | 2e-56 | PREDICTED: 30S ribosomal protein S17, chloroplastic [Nicotiana tomentosiformis] | 687 | 012624 (4) | ref|XP_004235675.1| | 5e-53 | PREDICTED: 30S ribosomal protein S17, chloroplastic [Solanum lycopersicum] |
| JMSF025M02 | Sequence | 675 | 012624 (4) | ref|XP_009592771.1| | 2e-56 | PREDICTED: 30S ribosomal protein S17, chloroplastic [Nicotiana tomentosiformis] | 684 | 012624 (4) | ref|XP_009592771.1| | 2e-54 | PREDICTED: 30S ribosomal protein S17, chloroplastic [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
JMSF025M02- GGGGAAATATTTTTAGCTTTGTGG
JMSF024E16- GG
____________________________________________________________
consensus GGGGAAATATTTTTAGCTTTGTGG
. : . : . : . : . : . :
JMSF025M02- CTTTGTGCTCGTCATCCTCTTTCTTATCCAAACTCTCCCAAAATGCCACTCACCTCTCCT
JMSF024E16- CTTTGTGCTCGTCATCCTCTTTCTTATCCAAACTCTCCCAAAATGCCACTCACCTCTCCT
rJMSF025M02+ TGCTCGTCATCCTCTTTNTTATCCAAACTCTCCCAAAATGCCACTCACCTTTCNT
____________________________________________________________
consensus CTTTGTGCTCGTCATCCTCTTTCTTATCCAAACTCTCCCAAAATGCCACTCACCTCTCCT
. : . : . : . : . : . :
JMSF025M02- CTTCTTCAACTCCCAATCTCCCAATTCAAATCCCTCACCCTCGCTACCCCTTTCCTCCAT
JMSF024E16- CTTCTTCAACTCCCAATCTCCCAATTCAAATCCCTCACCCTCGCTACCCCTTTCCTCCAT
rJMSF025M02+ CTTCTTCAACTCCCAATCTCCCAATTCAAATCCCTCACCCTCGCTACCCCTTTCCTCCAT
rJMSF024E16+ TTCTTCAACTCCCAATCTCCCAATTCAAATCCCTCACCCTCGCTACCCCTTTCCTCCAT
____________________________________________________________
consensus CTTCTTCAACTCCCAATCTCCCAATTCAAATCCCTCACCCTCGCTACCCCTTTCCTCCAT
. : . : . : . : . : . :
JMSF025M02- GGCTCCTCCTCTCTGTCCCATCTCTCAAAGCCCTCTTCTTGCATCTCCGCTCCCCAGCCA
JMSF024E16- GGCTCCTCCTCTCTGTCCCATCTCTCAAAGCCCTCTTCTTGCATCTCCGCTCCCCAGCCA
rJMSF025M02+ GGCTCCTCCTCTCTGTCCCATCTCTCAAAGCCCTCTTCTTGCATCTCCGCTCCCCAGCCA
rJMSF024E16+ GGCTCCTCCTCTCTGTCCCATCTCTCAAAGCCCTCTTCTTGCATCTCCGCTCCCCAGCCA
____________________________________________________________
consensus GGCTCCTCCTCTCTGTCCCATCTCTCAAAGCCCTCTTCTTGCATCTCCGCTCCCCAGCCA
. : . : . : . : . : . :
JMSF025M02- CGCGCCCCCGCTTTCCTCCCCGCAATTCGGGCTATGAAGGTCATGCAGGGCCGCGTCGTC
JMSF024E16- CGCGCCCCCGCTTTCCTCCCCGCAATTCGGGCTATGAAGGTCATGCAGGGCCGCGTCGTC
rJMSF025M02+ CGCGCCCCCGCTTTCCTCCCCGCAATTCGGGCTATGAAGGTCATGCAGGGCCGCGTCGTC
rJMSF024E16+ CGCGCCCCCGCTTTCCTCCCCGCAATTCGGGCTATGAAGGTCATGCAGGGCCGCGTCGTC
____________________________________________________________
consensus CGCGCCCCCGCTTTCCTCCCCGCAATTCGGGCTATGAAGGTCATGCAGGGCCGCGTCGTC
. : . : . : . : . : . :
JMSF025M02- TGCGCCACCAACGACAAGACTGTTGCCGTCGAGGTTGTCCGCCTCACAGTGCACCCAAAG
JMSF024E16- TGCGCCACCAACGACAAGACTGTTGCCGTCGAGGTTGTCCGCCTCACAGTGCACCCAAAG
rJMSF025M02+ TGCGCCACCAACGACAAGACTGTTGCCGTCGAGGTTGTCCGCCTCACAGTGCACCCAAAG
rJMSF024E16+ TGCGCCACCAACGACAAGACTGTTGCCGTCGAGGTTGTCCGCCTCACAGTGCACCCAAAG
____________________________________________________________
consensus TGCGCCACCAACGACAAGACTGTTGCCGTCGAGGTTGTCCGCCTCACAGTGCACCCAAAG
. : . : . : . : . : . :
JMSF025M02- TACAAGCGCAGGTACAGGGTGAAGAAGAAGTACCAGGCTCACGACCCCTCCAACCAGTTC
JMSF024E16- TACAAGCGCAGGTACAGGGTGAAGAAGAAGTACCAGGCTCACGACCCCTCCAACCAGTTC
rJMSF025M02+ TACAAGCGCAGGTACAGGGTGAAGAAGAAGTACCAGGCTCACGACCCCTCCAACCAGTTC
rJMSF024E16+ TACAAGCGCAGGTACAGGGTGAAGAAGAAGTACCAGGCTCACGACCCCTCCAACCAGTTC
____________________________________________________________
consensus TACAAGCGCAGGTACAGGGTGAAGAAGAAGTACCAGGCTCACGACCCCTCCAACCAGTTC
. : . : . : . : . : . :
JMSF025M02- AAAGTTGGGGACTTTGTTCAGCTAGAAAAGAGCCGCCCCATTAGCAAGACCAAGACTTTC
JMSF024E16- AAAGTTGGGGACTTTGTTCAGCTAGAAAAGAGCCGCCCCATTAGCAAGACCAAGACTTTC
rJMSF025M02+ AAAGTTGGGGACTTTGTTCAGCTAGAAAAGAGCCGCCCCATTAGCAAGACCAAGACTTTC
rJMSF024E16+ AAAGTTGGGGACTTTGTTCAGCTAGAAAAGAGCCGCCCCATTAGCAAGACCAAGACTTTC
____________________________________________________________
consensus AAAGTTGGGGACTTTGTTCAGCTAGAAAAGAGCCGCCCCATTAGCAAGACCAAGACTTTC
. : . : . : . : . : . :
JMSF025M02- GTTGCCATCCCTGCCCCTCCCAGGAATCAGCGCAAGCCCAAGGAGGATACCGAGTCCCAG
JMSF024E16- GTTGCCATCCCTGCCCCTCCCAGGAATCAGCGCAAGCCCAAGGAGGATACCGAGTCCCAG
rJMSF025M02+ GTTGCCATCCCTGCCCCTCCCAGGAATCAGCGCAAGCCCAAGGAGGATACCGAGTCCCAG
rJMSF024E16+ GTTGCCATCCCTGCCCCTCCCAGGAATCAGCGCAAGCCCAAGGAGGATACCGAGTCCCAG
____________________________________________________________
consensus GTTGCCATCCCTGCCCCTCCCAGGAATCAGCGCAAGCCCAAGGAGGATACCGAGTCCCAG
. : . : . : . : . : . :
JMSF025M02- GAGCTTGGGCTTCCCATGGAGTCCCAGCAGACTGAGAGTAATTAGAACTGGCTTTGTTGG
JMSF024E16- GAGCTTGGGCTTCCCATGGAGTCCCAGCAGACTGAGAGTAATTAGAACTGGCTTTGTTGG
rJMSF025M02+ GAGCTTGGGCTTCCCATGGAGTCCCAGCAGACTGAGAGTAATTAGAACTGGCTTTGTTGG
rJMSF024E16+ GAGCTTGGGCTTCCCATGGAGTCCCAGCAGACTGAGAGTAATTAGAACTGGCTTTGTTGG
____________________________________________________________
consensus GAGCTTGGGCTTCCCATGGAGTCCCAGCAGACTGAGAGTAATTAGAACTGGCTTTGTTGG
. : . : . : . : . : . :
JMSF025M02- TATTCAAAGTTTGATTGTATTTTGCGTTTTCTTGAATTTTTGCTAGTGAAAACTTATCAT
JMSF024E16- TATTCAAAGTTTGATTGTATTTTGCGTTTTCTTGAATTTTTGCTAGTGAAAACTTATCAT
rJMSF025M02+ TATTCAAAGTTTGATTGTATTTTGCGTTTTCTTGAATTTTTGCTAGTGAAAACTTATCAT
rJMSF024E16+ TATTCAAAGTTTGATTGTATTTTGCGTTTTCTTGAATTTTTGCTAGTGAAAACTTATCAT
____________________________________________________________
consensus TATTCAAAGTTTGATTGTATTTTGCGTTTTCTTGAATTTTTGCTAGTGAAAACTTATCAT
. : . : . : . : . : . :
JMSF025M02- TGTGTAGTTTGATTAATGTGTTAAATAATGAATGTTTTGTCTTGATTTTAT
JMSF024E16- TGTGTAGTTTGATTAATGTGTTAAATAATGAATGTTTTGTCTTGATTTTATGGGTTTAGT
rJMSF025M02+ TGTGTAGTTTGATTAATGTGTTAAATAATGAATGTTTTGTCTTGATTTTATGGGTTTAGT
rJMSF024E16+ TGTGTAGTTTGATTAATGTGTTAAATAATGAATGTTTTGTCTTGATTTTATGGGTTTAGT
____________________________________________________________
consensus TGTGTAGTTTGATTAATGTGTTAAATAATGAATGTTTTGTCTTGATTTTATGGGTTTAGT
. : . : . : . : . : . :
JMSF024E16- ATCTTTGTTGCTCACTCCTGA
rJMSF025M02+ ATCTTTGTTGCTCACTCCTGATTGGTGCT
rJMSF024E16+ ATCTTTGTTGCTCACTCCTGATTGGTGCTTATTGACCAATGTGAATTAAGATGTTCGATC
____________________________________________________________
consensus ATCTTTGTTGCTCACTCCTGATTGGTGCTTATTGACCAATGTGAATTAAGATGTTCGATC