| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF024A04 | Sequence | 657 | 005192 (4) | ref|XP_009792642.1| | 2e-108 | PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 [Nicotian | 761 | 012622 (4) | emb|CDP14626.1| | 3e-17 | unnamed protein product [Coffea canephora] |
| JMSF030B06 | Sequence | 689 | 005192 (4) | ref|XP_009792642.1| | 2e-99 | PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 [Nicotian | 748 | 012622 (4) | emb|CDP14626.1| | 8e-14 | unnamed protein product [Coffea canephora] |
| JMSF034I13 | Sequence | 699 | 005192 (4) | ref|XP_009792642.1| | 9e-120 | PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 [Nicotian | 718 | 012622 (4) | emb|CDP14626.1| | 2e-11 | unnamed protein product [Coffea canephora] |
| JMSF035I13 | Sequence | 348 | 012622 (4) | ||||||||
This contig is upended
. : . : . : . : . : . :
rJMSF030B06+ TGAGAAA
rJMSF024A04+ GAAAGCTGCCACAGAAAATATTNGGATACAAAANTGAGAAA
____________________________________________________________
consensus GAAAGCTGCCACAGAAAATATTNGGATACAAAANTGAGAAA
. : . : . : . : . : . :
rJMSF030B06+ ATTCCTGAGTCAAAATTCATTGTCTCAGAGGAGATGTCTCTTCAAGTTGCTGGATCAGTA
rJMSF034I13+ TTCCTGAGTCAAAATTCATTGTCTCAGAGGAGATGTCTCTTCAAGTTGCTGGATCAGTA
rJMSF024A04+ ATTCCTGAGTCAAAATTCATTGTCTCAGAGGAGATGTCTCTTCAAGTTGCTGGATCAGTA
____________________________________________________________
consensus ATTCCTGAGTCAAAATTCATTGTCTCAGAGGAGATGTCTCTTCAAGTTGCTGGATCAGTA
. : . : . : . : . : . :
rJMSF030B06+ GCTTTGCTTTGGAACTCTGCAGTAAATAGCTTAAAATCGCTTTGCAGAGGAACAGATTGG
rJMSF034I13+ GCTTTGCTTTGGAACTCTGCAGTAAATAGCTTAAAATCGCTTTGCAGAGGAACAGATTGG
rJMSF024A04+ GCTTTGCTTTGGAACTCTGCAGTAAATAGCTTAAAATCGCTTTGCAGAGGAACAGATTGG
____________________________________________________________
consensus GCTTTGCTTTGGAACTCTGCAGTAAATAGCTTAAAATCGCTTTGCAGAGGAACAGATTGG
. : . : . : . : . : . :
rJMSF035I13+ CTGAGCATCCTGGGGACTTTTTCA
rJMSF030B06+ GTGCTATTTCTCAAGGTGGTTTCCTCTCTATTGATTCTGAGCATCCTGGGGACTTTTTCA
rJMSF034I13+ GTGCTATTTCTCAAGGTGGTTTCCTCTCTATTGATTCTGAGCATCCTGGGGACTTTTTCA
rJMSF024A04+ GTGCTATTTCTCAAGGTGGTTTCCTCTCTATTGATTCTGAGCATCCTGGGGACTTTTTCA
____________________________________________________________
consensus GTGCTATTTCTCAAGGTGGTTTCCTCTCTATTGATTCTGAGCATCCTGGGGACTTTTTCA
. : . : . : . : . : . :
rJMSF035I13+ CTGCGTAGCTNATTTGTCATCGTACTCCCCATTGCCTNNGTCGCTTTCGTTGTATATGAG
rJMSF030B06+ CTGCGTAGTTTATTTGTCATCGTACTCCCCATTGCCTTTGTCGCTTTCGTTGTATATGAG
rJMSF034I13+ CTGCGTAGTTTATTTGTCATCGTACTCCCCATTGCCTTTGTCGCTTTCGTTGTATATGAG
rJMSF024A04+ CTGCGTAGTTTATTTGTCATCGTACTCCCCATTGCCTTTGTCGCTTTCGTTGTATATGAG
____________________________________________________________
consensus CTGCGTAGTTTATTTGTCATCGTACTCCCCATTGCCTTTGTCGCTTTCGTTGTATATGAG
. : . : . : . : . : . :
rJMSF035I13+ AAAAAGGAGGAAGAGATAGAACACTTNGTTCACGAAGTTATTTCGTGTGTCTCTAAACTG
rJMSF030B06+ AAAAAGGAGGAAGAGATAGAACACTTTGTTCACGAAGTTATTTCGTGTGTCTCTAAACTG
rJMSF034I13+ AAAAAGGAGGAAGAGATAGAACACTTTGTTCACGAAGTTATTTCGTGTGTCTCTAAACTG
rJMSF024A04+ AAAAAGGAGGAAGAGATAGAACACTTTGTTCACGAAGTTATTTCGTGTGTCTCTAAACTG
____________________________________________________________
consensus AAAAAGGAGGAAGAGATAGAACACTTTGTTCACGAAGTTATTTCGTGTGTCTCTAAACTG
. : . : . : . : . : . :
rJMSF035I13+ AAGTCCAACATTGTCGAGAAAGTGCTCATCAGCTCCAAGAAAACACAATAGTTGTCTACC
rJMSF030B06+ AAGTCCAACATTGTCGAGAAAGTGCTCATCAGCTCCAAGAAAACACAATAGTTGTCTACC
rJMSF034I13+ AAGTCCAACATTGTCGAGAAAGTGCTCATCAGCTCCAAGAAAACACAATAGTTGTCTACC
rJMSF024A04+ AAGTCCAACATTGTCGAGAAAGTGCTCATCAGCTCCAAGAAAACACAATAGTTGTCTACC
____________________________________________________________
consensus AAGTCCAACATTGTCGAGAAAGTGCTCATCAGCTCCAAGAAAACACAATAGTTGTCTACC
. : . : . : . : . : . :
rJMSF035I13+ TCTCCTTTTCAATTTCTCCGGGCTTCGNGCATAGTTCTTGGAAGCTNTATGCTATAGCTG
rJMSF030B06+ TCTCCTTTTCAATTTCTCCGGGCTTCGTGCATAGTTCTTGGAAGCTTTATGCTATAGCTG
rJMSF034I13+ TCTCCTTTTCAATTTCTCCGGGCTTCGTGCATAGTTCTTGGAAGCTTTATGCTATAGCTG
rJMSF024A04+ TCTCCTTTTCAATTTCTCCGGGCTTCGTGCATAGTTCTTGGAAGCTTTATGCTATAGCTG
____________________________________________________________
consensus TCTCCTTTTCAATTTCTCCGGGCTTCGTGCATAGTTCTTGGAAGCTTTATGCTATAGCTG
. : . : . : . : . : . :
rJMSF035I13+ GCTCTC-GGAAGCTCAAGGACCCGATTCCATCGTGCTTCCTACAAAAANTTCTGCATTGG
rJMSF030B06+ GCTCTCTTGAAGCTCAAGGACCCGATTCCATCGTGCTTCCTACAAAAACTTCTGCATTGG
rJMSF034I13+ GCTCTCTTGAAGCTCAAGGACCCGATTCCATCGTGCTTCCTACAAAAACTTCTGCATTGG
rJMSF024A04+ GCTCTCTTGAAGCTCAAGGACCCGATTCCATCGTGCTTCCTACAAAAACTTCTGCATTGG
____________________________________________________________
consensus GCTCTCTTGAAGCTCAAGGACCCGATTCCATCGTGCTTCCTACAAAAACTTCTGCATTGG
. : . : . : . : . : . :
rJMSF035I13+ GGTCCCAAACGCAAAGATATGTACT
rJMSF030B06+ GGTCCCAAACGCAAAGATATGTACTGCTACCCTCCACTTTCTGGACTTGTGCCTTCATCA
rJMSF034I13+ GGTCCCAAACGCAAAGATATGTACTGCTACCCTCCACTTTCTGGACTTGTGCCTTCATCA
rJMSF024A04+ GGTCCCAAACGCAAAGATATGTACTGCTACCCTCCACTTTCTGGACTTGTGCCTTCATCA
____________________________________________________________
consensus GGTCCCAAACGCAAAGATATGTACTGCTACCCTCCACTTTCTGGACTTGTGCCTTCATCA
. : . : . : . : . : . :
rJMSF030B06+ TTTCTCTATTGTGGAACTAACATGTTATTGCATTCCTTTATTTCTATCCACATTATACTA
rJMSF034I13+ TTTCTCTATTGTGGAACTAACATGTTATTGCATTCCTTTATTTCTATCCACATTATACTA
rJMSF024A04+ TTTCTCTATTGTGGAACTAACATGTTATTGCATTCCTTTATTTCTATCCACATTATACTA
____________________________________________________________
consensus TTTCTCTATTGTGGAACTAACATGTTATTGCATTCCTTTATTTCTATCCACATTATACTA
. : . : . : . : . : . :
rJMSF030B06+ AACTCTTGCCTGGTGGGATACGTCGTTGTTGTTGCAACACCGAGTTTGTAAACTTTATAG
rJMSF034I13+ AACTCTTGCCTGGTGGGATACGTCGTTGGTGTTGCAACACCGAGTTTGTAAACTTTATAG
rJMSF024A04+ AACTCTTGCCTGGTGGGATACGTCGTTGGTGTTGCAACACCGAGTTTGTAAACTTTATAG
____________________________________________________________
consensus AACTCTTGCCTGGTGGGATACGTCGTTGGTGTTGCAACACCGAGTTTGTAAACTTTATAG
. : . : . : . : . : . :
rJMSF030B06+ GGGAGAACTAGATATTGGGTTTTTTGTTGTGATGACAACC
rJMSF034I13+ GGGAGAACTAGATATTGGGTTTTTTGTTGTGATGACAACC
rJMSF024A04+ GGGAGAACTAGATATTGGGTTTTTTGTTGTGATGACAACCCTTGTTCCTTAATGCCCCTG
____________________________________________________________
consensus GGGAGAACTAGATATTGGGTTTTTTGTTGTGATGACAACCCTTGTTCCTTAATGCCCCTG