Contig 012620:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF023L01Sequence645010707 (5)ref|XP_006365872.1|3e-83PREDICTED: myosin heavy chain, non-muscle-like [Solanum tuberosum]869012620 (3)ref|XP_009600962.1|7e-42PREDICTED: myosin-2 heavy chain isoform X2 [Nicotiana tomentosiformis] ref|XP_00
JMSF034G22Sequence676010707 (5)ref|XP_006365872.1|1e-40PREDICTED: myosin heavy chain, non-muscle-like [Solanum tuberosum]824012620 (3)ref|XP_009600962.1|5e-41PREDICTED: myosin-2 heavy chain isoform X2 [Nicotiana tomentosiformis] ref|XP_00
JMSF037C02Sequence657010707 (5)ref|XP_009779943.1|144PREDICTED: uncharacterized protein LOC104229065 [Nicotiana sylvestris]682012620 (3)ref|XP_009600962.1|5e-36PREDICTED: myosin-2 heavy chain isoform X2 [Nicotiana tomentosiformis] ref|XP_00

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF023L01+                                         TTCNCNTTCCCAGTCCAAGATATAAGTCC
                      ____________________________________________________________
consensus                                            TTCNCNTTCCCAGTCCAAGATATAAGTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF023L01+          TACCCCTNGTCCAAANCCTTATCTGGACATGAGGAAAAATCTCTTACTTCTTGTTCTGCT
                      ____________________________________________________________
consensus             TACCCCTNGTCCAAANCCTTATCTGGACATGAGGAAAAATCTCTTACTTCTTGTTCTGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034G22+             GTTTCTGGTCCTGATACTTCCCCTCCCAAGCCC-AAAAATACAAGTCCTA-CCCTGG
rJMSF023L01+          GATGTTTCTGGTCCTGATACTTCNCCTTCCAAGCCCAAAAAATACAAGTCCTACCCCTGG
                      ____________________________________________________________
consensus             GATGTTTCTGGTCCTGATACTTCCCCTTCCAAGCCCAAAAAATACAAGTCCTACCCCTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF037C02+                             CGTGAGCGCTTTAAATTGCAGCAACAGTCTCTTAACCACAA
rJMSF034G22+          GCCAAAACCTTTATCTGGACGTGAGCGCTTTAAATTGCAGCAACAGTCTCTTAACCACAA
rJMSF023L01+          GCCAAAACCTTTATCTGGACGTGAGCGCTTTAAATTGCAGCAACAGTCTCTTAACCACAA
                      ____________________________________________________________
consensus             GCCAAAACCTTTATCTGGACGTGAGCGCTTTAAATTGCAGCAACAGTCTCTTAACCACAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF037C02+          AAGGCAGGCACTTAAGCTGCGAAGGGAAGGCCGATCAGAAGAAGCTGATGCTGAATTTGA
rJMSF034G22+          AAGGCAGGCACTTAAGCTGCGAAGGGAAGGCCGATCAGAAGAAGCTGATGCTGAATTTGA
rJMSF023L01+          AAGGCAGGCACTTAAGCTGCGAAGGGAAGGCCGATCAGAAGAAGCTGATGCTGAATTTGA
                      ____________________________________________________________
consensus             AAGGCAGGCACTTAAGCTGCGAAGGGAAGGCCGATCAGAAGAAGCTGATGCTGAATTTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF037C02+          AAAAGCAAAGGCCATTGAAGCCCAACTGGAGGAATTGACCACAGGGTCTTCTGGTCATGG
rJMSF034G22+          AAAAGCAAAGGCCATTGAAGCCCAACTGGAGGAATTGACCACAGGGTCTTCTGGTCATGG
rJMSF023L01+          AAAAGCAAAGGCCATTGAAGCCCAACTGGAGGAATTGACCACAGGGTCTTCTGGTCATGG
                      ____________________________________________________________
consensus             AAAAGCAAAGGCCATTGAAGCCCAACTGGAGGAATTGACCACAGGGTCTTCTGGTCATGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF037C02+          AGCAGAACCAACAGATGGGGTTAGTGTTGAGGATTTTCTTGATCCTCAGCTTTTGTCCGC
rJMSF034G22+          AGCAGAACCAACAGATGGGGTTAGTGTTGAGGATTTTCTTGATCCTCAGCTTTTGTCCGC
rJMSF023L01+          AGCAGAACCAACAGATGGGGTTAGTGTTGAGGATTTTCTTGATCCTCAGCTTTTGTCCGC
                      ____________________________________________________________
consensus             AGCAGAACCAACAGATGGGGTTAGTGTTGAGGATTTTCTTGATCCTCAGCTTTTGTCCGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF037C02+          CTTGGCAGCCATTGGAATTTCAGATACTGCTGTTGGATCCCAAGGGCCTGAAAAATTGGA
rJMSF034G22+          CTTGGCAGCCATTGGAATTTCAGATACTGCTGTTGGATCCCAAGGGCCTGAAAAATTGGA
rJMSF023L01+          CTTGGCAGCCATTGGAATTTCAGATACTGCTGTTGGATCCCAAGGGCCTGAAAAATTGGA
                      ____________________________________________________________
consensus             CTTGGCAGCCATTGGAATTTCAGATACTGCTGTTGGATCCCAAGGGCCTGAAAAATTGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF037C02+          GGCACAAAGTTCAGTGGCTAGCAAGGTGGACACTGGTGGACCCCAAGGCCATCAAAGATC
rJMSF034G22+          GGCACAAAGTTCAGTGGCTAGCAAGGTGGACACTGGTGGACCCCAAGGCCATCAAAGATC
rJMSF023L01+          GGCACAAAGTTCAGTGGCTAGCAAGGTGGACACTGGTGGACCCCAAGGCCATCAAAGATC
                      ____________________________________________________________
consensus             GGCACAAAGTTCAGTGGCTAGCAAGGTGGACACTGGTGGACCCCAAGGCCATCAAAGATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF037C02+          AGAGTCAAAAAAATCTACCACTGGTATGGTCAACAACACTGCCGAAGAGAAGATGCAGTT
rJMSF034G22+          AGAGTCAAAAAAATCTACCACTGGTATGGTCAACAACACTGCCGAAGAGAAGATGCAGTT
rJMSF023L01+          AGAGTCAAAAAAATCTACCACTGGTATGGTCAACAACACTGCCGAAGAGAAGATGCAGTT
                      ____________________________________________________________
consensus             AGAGTCAAAAAAATCTACCACTGGTATGGTCAACAACACTGCCGAAGAGAAGATGCAGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF037C02+          GGAAGAGAAGATTAAGGCCGAGAAGTTAAAGGCATTAAACTTGAAACGTTCTGGAAAGCA
rJMSF034G22+          GGAAGAGAAGATTAAGGCCGAGAAGTTAAAGGCATTAAACTTGAAACGTTCTGGAAAGCA
rJMSF023L01+          GGAAGAGAAGATTAAGGCCGAGAAGTTAAAGGCATTAAACTTGAAACGTTCTGGAAAGCA
                      ____________________________________________________________
consensus             GGAAGAGAAGATTAAGGCCGAGAAGTTAAAGGCATTAAACTTGAAACGTTCTGGAAAGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF037C02+          GGCTGAAGCCCTAGCTGCCCTTCGTCAGGCCAAACTCTTTGAAAAGGAGTTGAATTCTTT
rJMSF034G22+          GGCTGAAGCCCTAGCTGCCCTTCGTCAGGCCAAACTCTTTGAAAAGGAGTTGAATTCTTT
rJMSF023L01+          GGCTGAAGCCCTAGCTGCCCTTCGTCAGGCCAAACTCTTTGAAAAGGAGTTGAATTCTTT
                      ____________________________________________________________
consensus             GGCTGAAGCCCTAGCTGCCCTTCGTCAGGCCAAACTCTTTGAAAAGGAGTTGAATTCTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF037C02+          AAATTCTCAACAGTAATGGGTTGTAACCAAGTGTTTCCTCTAGACCTGGGATATTTCCAC
rJMSF034G22+          AAATTCTCAACAGTAATGGGTTGTAACCAAGTGTTTCCTCTAGACCTGGGATATTTCCAC
rJMSF023L01+          AAATTCTCAACAGTAATGGGTTGTAACCAAGTGTTTCCTCTAGACCTGGGATATTTCCAC
                      ____________________________________________________________
consensus             AAATTCTCAACAGTAATGGGTTGTAACCAAGTGTTTCCTCTAGACCTGGGATATTTCCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF037C02+          TGCAAGAAGGAATAAGTGTGATTATATTCCTTTTCTATTTTTTGTACAGGCTCAGCTCAA
rJMSF034G22+          TGCAAGAAGGAATAAGTGTGATTATATTCCTTTTCTATTTTTTGTACAGGCTCAGCTCAA
rJMSF023L01+          TGCAAGAAGGAATAAGTGTGATTATATTCCTTTTCTATTTTTTGTACAGGCTCAGCTCAA
                      ____________________________________________________________
consensus             TGCAAGAAGGAATAAGTGTGATTATATTCCTTTTCTATTTTTTGTACAGGCTCAGCTCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF037C02+          TGATATTACATTGGAGCGACTTCAGAAGACTGAGTTCAT                     
rJMSF034G22+          TGATATTACATTGGAGCGACTTCAGAAGACTGAGTTCAT                     
rJMSF023L01+          TGATATTACATTGGAGCGACTTCAGAAGACTGAGTTCATTGAGTTTACATCTTAAAGAAC
                      ____________________________________________________________
consensus             TGATATTACATTGGAGCGACTTCAGAAGACTGAGTTCATTGAGTTTACATCTTAAAGAAC