Contig 012618:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF002D02-                   TGGATCTATGTTTGAATGGGAAGTGCGAGCATAGAAGTAGTACTATTAACAA
JMSF023J11-                           TGTTTGAATGGGAAGTGCGAGCATAGAAGTAGTACTATTAACAA
                      ____________________________________________________________
consensus                     TGGATCTATGTTTGAATGGGAAGTGCGAGCATAGAAGTAGTACTATTAACAA
 
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JMSF002D02-           CAAAATCGAAGATCGGATATTTAGGAATCATCCATGTCTAATACGGACTTACGGAGTATC
JMSF023J11-           CAAAATCGAAGATCGGATATTTAGGAATCATCCATGTCTAATACGGACTTACGGAGTATC
                      ____________________________________________________________
consensus             CAAAATCGAAGATCGGATATTTAGGAATCATCCATGTCTAATACGGACTTACGGAGTATC
 
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JMSF002D02-           TGGTGAAGATCACATATTGAATCAGAACTGAATTTAGATTGATCGGCAACGATGTCTCTA
JMSF023J11-           TGGTGAAGATCACATATTGAATCAGAACTGAATTTAGATTGATCGGCAACGATGTCTCTA
                      ____________________________________________________________
consensus             TGGTGAAGATCACATATTGAATCAGAACTGAATTTAGATTGATCGGCAACGATGTCTCTA
 
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JMSF002D02-           TTGAATCAGCTCTTCAACAGAGGACTTCAGGCCTCTAAGTGCAAAACATGTTTAACTTTG
JMSF023J11-           TTGAATCAGCTCTTCAACAGAGGACTTCAGGCCTCTAAGTGCAAAACATGTTTAACTTTG
                      ____________________________________________________________
consensus             TTGAATCAGCTCTTCAACAGAGGACTTCAGGCCTCTAAGTGCAAAACATGTTTAACTTTG
 
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JMSF002D02-           GCTGTCTCTCGCATTAAATTGCTGCAAAACAAGAGAGATGTGCAGCTTAAGCTTATGCGC
JMSF023J11-           GCTGTCTCTCGCATTAAATTGCTGCAAAACAAGAGAGATGTGCAGCTTAAGCTTATGCGC
                      ____________________________________________________________
consensus             GCTGTCTCTCGCATTAAATTGCTGCAAAACAAGAGAGATGTGCAGCTTAAGCTTATGCGC
 
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JMSF002D02-           AAAGAGATAGCCCAATTTCTGCAAACTGGCCAAGAAGCCATAGCTCGAATCCGGGTTGAA
JMSF023J11-           AAAGAGATAGCCCAATTTCTGCAAACTGGCCAAGAAGCCATAGCTCGAATCCGGGTTGAA
                      ____________________________________________________________
consensus             AAAGAGATAGCCCAATTTCTGCAAACTGGCCAAGAAGCCATAGCTCGAATCCGGGTTGAA
 
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JMSF002D02-           CATGTTATACGAGANC-AAATATATGGGCTGCATATGAGAT                   
JMSF023J11-           CATGTTATACGAGAACAAAATATATGGGCTGCATATGAGATCTTGGAGATGTTTTGTGAA
                      ____________________________________________________________
consensus             CATGTTATACGAGAACAAAATATATGGGCTGCATATGAGATCTTGGAGATGTTTTGTGAA
 
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JMSF023J11-           TTTGTTCTTGCTCGTGTTCCTATTCTTGAATCCCAAAGAGAATGCCCTTCAGAGTTGCGT
                      ____________________________________________________________
consensus             TTTGTTCTTGCTCGTGTTCCTATTCTTGAATCCCAAAGAGAATGCCCTTCAGAGTTGCGT
 
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JMSF023J11-           GAAGCTGTGGCAAGCATAATATTTGCAGCTCCCAGGTGTTCAGATTTGCCAGACTTATTA
rJMSF002D02+                                                TTCAGANTTGCCAGACTTATTA
                      ____________________________________________________________
consensus             GAAGCTGTGGCAAGCATAATATTTGCAGCTCCCAGGTGTTCAGATTTGCCAGACTTATTA
 
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JMSF023J11-           CATGTCAGGAATTTATTTGCAGCCNAGTATGGGAAGGAGTTCGTAGCTGCTGCATCTGAG
rJMSF002D02+          CATGTCAGGAATTTATTTGCAGCCAAGTATGGGAAGGAGTTCGTAGCTGCTGCATCTGAG
                      ____________________________________________________________
consensus             CATGTCAGGAATTTATTTGCAGCCAAGTATGGGAAGGAGTTCGTAGCTGCTGCATCTGAG
 
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JMSF023J11-           CTTCGACCTGATACTAGTGTCAACCGTACAATTGTTGAGAAACTTTCAGTTAGCACTCCA
rJMSF002D02+          CTTCGACCTGATACTAGTGTCAACCGTACAATTGTTGAGAAACTTTCAGTTAGCACTCCA
                      ____________________________________________________________
consensus             CTTCGACCTGATACTAGTGTCAACCGTACAATTGTTGAGAAACTTTCAGTTAGCACTCCA
 
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JMSF023J11-           TCCCCACNAGTGAAGCT                                           
rJMSF002D02+          TCCCCACAAGTGAAGCTCAAGTTATTGAAGGAAATTGCACGGGAGTATAATGTGGAGTGG
                      ____________________________________________________________
consensus             TCCCCACAAGTGAAGCTCAAGTTATTGAAGGAAATTGCACGGGAGTATAATGTGGAGTGG
 
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rJMSF002D02+          GATTCTTCTAAGACTGAATCTGAACTTGGCAGAAAACCAGAGGACCTTTTGAATGGACCA
rJMSF023J11+                                            AACCAGAGGACCTTTTGAATGGACCA
                      ____________________________________________________________
consensus             GATTCTTCTAAGACTGAATCTGAACTTGGCAGAAAACCAGAGGACCTTTTGAATGGACCA
 
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rJMSF002D02+          AAGCAAATAGCCAAAGCTTCTCAAGTTTGTGTGGAGCAAAATTCTCGACCAAGTTGTGAG
rJMSF023J11+          AAGCAAATAGCCAAAGCTTCTCAAGTTTGTGTGGAGCAAAATTCTCGACCAAGTTGTGAG
                      ____________________________________________________________
consensus             AAGCAAATAGCCAAAGCTTCTCAAGTTTGTGTGGAGCAAAATTCTCGACCAAGTTGTGAG
 
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rJMSF002D02+          AATTCCTTGCTGTCAACGAATGGTAAACAACGTCGAGAGCATGATCCTCAATCTCCAGGT
rJMSF023J11+          AATTCCTTGCTGTCAACGAATGGTAAACAACGTCGAGAGCATGATCCTCAATCTCCAGGT
                      ____________________________________________________________
consensus             AATTCCTTGCTGTCAACGAATGGTAAACAACGTCGAGAGCATGATCCTCAATCTCCAGGT
 
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rJMSF002D02+          TGTGTTGCCAAGTCCAAGACACGACCCTTCTTATCTGCTGATACAAATAAAGCATCTTAT
rJMSF023J11+          TGTGTTGCCAAGTCCAAGACACGACCCTTCTTATCTGCTGATACAAATAAAGCATCTTAT
                      ____________________________________________________________
consensus             TGTGTTGCCAAGTCCAAGACACGACCCTTCTTATCTGCTGATACAAATAAAGCATCTTAT
 
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rJMSF002D02+          TATCAGGAGAACAGTGGTGAAGCAGTAAGTGATATCAGGGATACAAGATCAGCATCATCA
rJMSF023J11+          TATCAGGAGAACAGTGGTGAAGCAGTAAGTGATATCAGGGATACAAGATCAGCATCATCA
                      ____________________________________________________________
consensus             TATCAGGAGAACAGTGGTGAAGCAGTAAGTGATATCAGGGATACAAGATCAGCATCATCA
 
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rJMSF002D02+          TCTAATGTATTGGAGAGAGCTGAGAATGCTATTATGGCGGCAGAGCGTGCATCAGCTGCA
rJMSF023J11+          TCTAATGTATTGGAGAGAGCTGAGAATGCTATTATGGCGGCAGAGCGTGCATCAGCTGCA
                      ____________________________________________________________
consensus             TCTAATGTATTGGAGAGAGCTGAGAATGCTATTATGGCGGCAGAGCGTGCATCAGCTGCA
 
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rJMSF002D02+          GCACGAGCTGCTGCAGAGTTGGTAAATGTCAAGTTTGAATCTGTGAAAGTAGAAGAGAAA
rJMSF023J11+          GCACGAGCTGCTGCAGAGTTGGTAAATGTCAAGTTTGAATCTGTGAAAGTAGAAGAGAAA
                      ____________________________________________________________
consensus             GCACGAGCTGCTGCAGAGTTGGTAAATGTCAAGTTTGAATCTGTGAAAGTAGAAGAGAAA
 
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rJMSF002D02+          ATTATATAGTAGTTAAAATGCTTAACTAAATAAACCGAAAATGGAAATGAGTGTGTATGT
rJMSF023J11+          ATTATATAGTAGTTAAAATGCTTAACTAAATAAACCGAAAATGGAAATGAGTGTGTATGT
                      ____________________________________________________________
consensus             ATTATATAGTAGTTAAAATGCTTAACTAAATAAACCGAAAATGGAAATGAGTGTGTATGT
 
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rJMSF002D02+          ACCCTTTTTTCAAAAGGGGAAGCTTGTGGCGAGAGTACATGAGTGGAGGTTGATGTTT  
rJMSF023J11+          ACCCTTTTTTCAAAAGGGGAAGCTTGTGGCGAGAGTACATGAGTGGAGGTTGATGTTTGT
                      ____________________________________________________________
consensus             ACCCTTTTTTCAAAAGGGGAAGCTTGTGGCGAGAGTACATGAGTGGAGGTTGATGTTTGT
 
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rJMSF023J11+          TTTATTGTGTGAAATGGATTGGGAAGCTGGAAATGAATAAAACTCTTTAGTATAAGGAGA
                      ____________________________________________________________
consensus             TTTATTGTGTGAAATGGATTGGGAAGCTGGAAATGAATAAAACTCTTTAGTATAAGGAGA
 
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rJMSF023J11+          TGTTACTCTTTAGTTTATGTAGGAATAGGAATTGAAGTGTAATCTCCCTCAGCTGGTCCG
                      ____________________________________________________________
consensus             TGTTACTCTTTAGTTTATGTAGGAATAGGAATTGAAGTGTAATCTCCCTCAGCTGGTCCG
 
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rJMSF023J11+          TTGAGTTTCACTGAATGTTTAAAGTGAGTATGTAGGCATTATATTTCTCTAAAAGAATTG
                      ____________________________________________________________
consensus             TTGAGTTTCACTGAATGTTTAAAGTGAGTATGTAGGCATTATATTTCTCTAAAAGAATTG