Contig 012617:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031B11+                                                             TCCCTGCAT
rJMSF023F23+                AGTTCAAGGACTATATTNTGCATCCCAAGTTCAATGGGTATCAATTCCCTGCAT
                      ____________________________________________________________
consensus                   AGTTCAAGGACTATATTNTGCATCCCAAGTTCAATGGGTATCAATTCCCTGCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031B11+          ACGGTAGTTACACGAGAAGGCATGGTACCGCTTGAAGTTCAGATTAGGACAAAAGAGATG
rJMSF023F23+          ACGGTAGTTACACGAGAAGGCATGGTACCGCTTGAAGTTCAGATTAGGACAAAAGAGATG
                      ____________________________________________________________
consensus             ACGGTAGTTACACGAGAAGGCATGGTACCGCTTGAAGTTCAGATTAGGACAAAAGAGATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031B11+          CACTTGCAAGCAGAGTTCGGTTTTGCAGCTCATTGGAGATACAAGGAGGGTGATTGCAAA
rJMSF023F23+          CACTTGCAAGCAGAGTTCGGTTTTGCAGCTCATTGGAGATACAAGGAGGGTGATTGCAAA
                      ____________________________________________________________
consensus             CACTTGCAAGCAGAGTTCGGTTTTGCAGCTCATTGGAGATACAAGGAGGGTGATTGCAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031B11+          CATTCTTCCTTTGTGCTTCAGATGGTCGAGTGGGCACGTTGGGTCATAACCTGGCATTGT
rJMSF023F23+          CATTCTTCCTTTGTGCTTCAGATGGTCGAGTGGGCACGTTGGGTCATAACCTGGCATTGT
                      ____________________________________________________________
consensus             CATTCTTCCTTTGTGCTTCAGATGGTCGAGTGGGCACGTTGGGTCATAACCTGGCATTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031B11+          GAAGCAATGAGCAAGGACCAGCCATCCATTAGCCATTCCGACTCCATCAAGCCACCATGC
rJMSF023F23+          GAAGCAATGAGCAAGGACCAGCCATCCATTAGCCATTCCGACTCCATCAAGCCACCATGC
                      ____________________________________________________________
consensus             GAAGCAATGAGCAAGGACCAGCCATCCATTAGCCATTCCGACTCCATCAAGCCACCATGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031B11+          AAGTTTCCTTCTCACTCCGAGGATTGCCCGTTTTCTTGTATACCCGAGTGTGGGGCTGAC
rJMSF023F23+          AAGTTTCCTTCTCACTCCGAGGATTGCCCGTTTTCTTGTATACCCGAGTGTGGGGCTGAC
                      ____________________________________________________________
consensus             AAGTTTCCTTCTCACTCCGAGGATTGCCCGTTTTCTTGTATACCCGAGTGTGGGGCTGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031B11+          GGACCAGTTTATGTGATCATGATTGAGAACGACAAGATGTCAGTACAAGAGCTTGCTGCA
rJMSF023F23+          GGACCAGTTTATGTGATCATGATTGAGAACGACAAGATGTCAGTACAAGAGCTTGCTGCA
                      ____________________________________________________________
consensus             GGACCAGTTTATGTGATCATGATTGAGAACGACAAGATGTCAGTACAAGAGCTTGCTGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031B11+          CATTCGACAGTCATGGACCTGTTGGAGAAAGCTGGGCGTGGGAGTTCTCGATGGATCCCT
rJMSF023F23+          CATTCGACAGTCATGGACCTGTTGGAGAAAGCTGGGCGTGGGAGTTCTCGATGGATCCCT
                      ____________________________________________________________
consensus             CATTCGACAGTCATGGACCTGTTGGAGAAAGCTGGGCGTGGGAGTTCTCGATGGATCCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031B11+          TATGGATTTCCAGTAAAGGAAGAATTAAGGCCACGGTTGAACCATAGTCCAATTATAGAT
rJMSF023F23+          TATGGATTTCCAGTAAAGGAAGAATTAAGGCCACGGTTGAACCATAGTCCAATTATAGAT
                      ____________________________________________________________
consensus             TATGGATTTCCAGTAAAGGAAGAATTAAGGCCACGGTTGAACCATAGTCCAATTATAGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031B11+          CCCACCTGCAAGCTGAAAATGGGAGATGTGATAGAACTCACTCCAGCCATTCCCGACAAA
rJMSF023F23+          CCCACCTGCAAGCTGAAAATGGGAGATGTGATAGAACTCACTCCAGCCATTCCCGACAAA
                      ____________________________________________________________
consensus             CCCACCTGCAAGCTGAAAATGGGAGATGTGATAGAACTCACTCCAGCCATTCCCGACAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031B11+          TCCCTAACAGAATACAGGGAAGAGATCCAACGTATGTATGACAGAGGTCCGAATGTAGCG
rJMSF023F23+          TCCCTAACAGAATACAGGGAAGAGATCCAACGTATGTATGACAGAGGTCCGAATGTAGCG
                      ____________________________________________________________
consensus             TCCCTAACAGAATACAGGGAAGAGATCCAACGTATGTATGACAGAGGTCCGAATGTAGCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031B11+          ACTAGCACAACCATGGCTGGCTTAAGAAGCTGACCATGGATTCATTGTTTTACCCACATT
rJMSF023F23+          ACTAGCACAACCATGGCTGGCTTAAGAAGCTGACCATGGATTCATTGTTTTACCCACATT
                      ____________________________________________________________
consensus             ACTAGCACAACCATGGCTGGCTTAAGAAGCTGACCATGGATTCATTGTTTTACCCACATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031B11+          TGTTCATTGAAAAATTTGAAGTTGTAGCCAGATATTCATGTATATAAACCA         
rJMSF023F23+          TGTTCATTGAAAAATTTGAAGTTGTAGCCAGATATTCATGTATATAAACCATAAACTATT
                      ____________________________________________________________
consensus             TGTTCATTGAAAAATTTGAAGTTGTAGCCAGATATTCATGTATATAAACCATAAACTATT