| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF026E01 | Sequence | 585 | 005085 (3) | ref|XP_009591095.1| | 9e-79 | PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase A | 676 | 012614 (4) | ref|XP_002315617.2| | 2e-99 | leucine-rich repeat family protein [Populus trichocarpa] gb|EEF01788.2| leucine- |
| JMSF005F09 | Sequence | 435 | 018830 | ref|XP_009764066.1| | 2e-46 | PREDICTED: bifunctional epoxide hydrolase 2-like [Nicotiana sylvestris] | 456 | 012614 (4) | ref|XP_007045046.1| | 7e-53 | Leucine-rich repeat protein kinase family protein [Theobroma cacao] gb|EOY00878 |
| JMSF022O04 | Sequence | 689 | 005085 (3) | ref|XP_009800742.1| | 1e-51 | PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase A | 752 | 012614 (4) | ref|XP_002315617.2| | 3e-95 | leucine-rich repeat family protein [Populus trichocarpa] gb|EEF01788.2| leucine- |
| JMSF023O04 | Sequence | 279 | 005085 (3) | 252 | 012614 (4) | gb|KHG08504.1| | 9e-31 | hypothetical protein F383_35684 [Gossypium arboreum] | |||
This contig is upended
. : . : . : . : . : . :
rJMFF026E01+ GGTCAGCTAGACTGAAAATTGCAAGGGGAA
rJMSF022O04+ GGGAA
____________________________________________________________
consensus GGTCAGCTAGACTGAAAATTGCAAGGGGAA
. : . : . : . : . : . :
rJMFF026E01+ CAGCACTGGGCTTGGCCTACCTTCATGAATGCAGTCCCAGAAAATTCATCCATGGAGATA
rJMSF022O04+ CAGCACTGGGCTTGGCCTACCTTCATGAATGCAGTCCCAGAAAATTCATCCATGGAGATA
____________________________________________________________
consensus CAGCACTGGGCTTGGCCTACCTTCATGAATGCAGTCCCAGAAAATTCATCCATGGAGATA
. : . : . : . : . : . :
rJMFF026E01+ TAAAGCCATCCAACATTCTCCTAGATCATGACCTTCAACCTTATATTTCTGATTTCGGCC
rJMSF022O04+ TAAAGCCATCCAACATTCTCCTAGATCATGACCTTCAACCTTATATTTCTGATTTCGGCC
____________________________________________________________
consensus TAAAGCCATCCAACATTCTCCTAGATCATGACCTTCAACCTTATATTTCTGATTTCGGCC
. : . : . : . : . : . :
rJMFF026E01+ TCAACCGGCTGATCAACATTACTGGCAACAACCCTCCATCGTCCGGTGGCCTTATTGGAG
rJMSF022O04+ TCAACCGGCTGATCAACATTACTGGCAACAACCCTCCATCGTCCGGTGGCCTTATTGGAG
____________________________________________________________
consensus TCAACCGGCTGATCAACATTACTGGCAACAACCCTCCATCGTCCGGTGGCCTTATTGGAG
. : . : . : . : . : . :
rJMFF026E01+ GAGCCCTTCCTTATTTCAAATCAGTGCAAGCAACAGAGGGTAGCAACAACTATAGAGCGC
rJMSF005F09+ CAAATCAGTGCAAGCAACAGAGGGTAGCAACAACTATAGAGCGC
rJMSF022O04+ GAGCCCTTCCTTATTTCAAATCAGTGCAAGCAACAGAGGGTAGCAACAACTATAGAGCGC
____________________________________________________________
consensus GAGCCCTTCCTTATTTCAAATCAGTGCAAGCAACAGAGGGTAGCAACAACTATAGAGCGC
. : . : . : . : . : . :
rJMFF026E01+ CCGAGGCTTGGACCCCGGGTAGCAGACCTACACAGAAGTGGGATGTGTACTCATTTGGAG
rJMSF005F09+ CCGAGGCTTGGACCCCGGGTAGCAGACCTACACAGAAGTGGGATGTGTACTCATTTGGAG
rJMSF022O04+ CCGAGGCTTGGACCCCGGGTAGCAGACCTACACAGAAGTGGGATGTGTACTCATTTGGAG
____________________________________________________________
consensus CCGAGGCTTGGACCCCGGGTAGCAGACCTACACAGAAGTGGGATGTGTACTCATTTGGAG
. : . : . : . : . : . :
rJMFF026E01+ TTGTCCTGCTTGAACTGCTTACTGGGAAATCCCCAGAGTTTTCGCCCCCGACCACCTCGA
rJMSF005F09+ TTGTCCTGCTTGAACTGCTTACTGGGAAATCCCCAGAGTTTTCGCCCCCGACCACCTCGA
rJMSF022O04+ TTGTCCTGCTTGAACTGCTTACTGGGAAATCCCCAGAGTTTTCGCCCCCGACCACCTCGA
____________________________________________________________
consensus TTGTCCTGCTTGAACTGCTTACTGGGAAATCCCCAGAGTTTTCGCCCCCGACCACCTCGA
. : . : . : . : . : . :
rJMFF026E01+ CCTCCACAGAGATTCTAGACATGGTGGGGTGGGTGAGAAGAGGGTTCGAAGAGGAGAAGG
rJMSF023O04+ CACAGAGATTGTAGACATGGTGGGGTGGGTGAGAAGAGGGTTCGAAGAGGAGAAGG
rJMSF005F09+ CCTCCACAGAGATTCTAGACATGGTGGGGTGGGTGAGAAGAGGGTTCGAAGAGGAGAAGG
rJMSF022O04+ CCTCCACAGAGATTCTAGACATGGTGGGGTGGGTGAGAAGAGGGTTCGAAGAGGAGAAGG
____________________________________________________________
consensus CCTCCACAGAGATTCTAGACATGGTGGGGTGGGTGAGAAGAGGGTTCGAAGAGGAGAAGG
. : . : . : . : . : . :
rJMFF026E01+ CGCTGTCGGATTTGGTTGATCCACTCTTGCTTCAAGAAGTGCACGCCAAGAAGGAGGTGT
rJMSF023O04+ CGCTGTCGGATTTGGTNGATCCACTCTTGCTTCAAGAAGTGCACGCCNAGAAGGAGGTGT
rJMSF005F09+ CGCTGTCGGATTTGGTTGATCCACTCTTGCTTCAAGAAGTGCACGCCAAGAAGGAGGTGT
rJMSF022O04+ CGCTGTCGGATTTGGTTGATCCACTCTTGCTTCAAGAAGTGCACGCCAAGAAGGAGGTGT
____________________________________________________________
consensus CGCTGTCGGATTTGGTTGATCCACTCTTGCTTCAAGAAGTGCACGCCAAGAAGGAGGTGT
. : . : . : . : . : . :
rJMFF026E01+ TGGCCGTGTTTCATGTAGCTCTTGCGTGTACCGAGAGAGACCCAGAGGCTCGGCCGAGGA
rJMSF023O04+ TGGCCGTGTTTCATGTAGCTCTTGCGTGTACCGAGAGAGACCCAGAGGCTCGNCCGAGGA
rJMSF005F09+ TGGCCGTGTTTCATGTAGCTCTTGCGTGTACCGAGAGAGACCCAGAGGCTCGGCCGAGGA
rJMSF022O04+ TGGCCGTGTTTCATGTAGCTCTTGCGTGTACCGAGAGAGACCCAGAGGCTCGGCCGAGGA
____________________________________________________________
consensus TGGCCGTGTTTCATGTAGCTCTTGCGTGTACCGAGAGAGACCCAGAGGCTCGGCCGAGGA
. : . : . : . : . : . :
rJMFF026E01+ TGAAAACTGTTTCAGAGAATCTTGAGAGAGCTTGAAAGCTGGCATTGTTCTGCAGATGTT
rJMSF023O04+ TGAAAACTGTTTCAGAGAATCTTGAGNGAGCTTGAAAGCTGGCATTGTTCTGCAGATGNT
rJMSF005F09+ TGAAAACTGTTTCAGAGAATCTTGAGAGAGCTTGAAAGCTGGCATTGTTCTGCAGATGTT
rJMSF022O04+ TGAAAACTGTTTCAGAGAATCTTGAGAGAGCTTGAAAGCTGGCATTGTTCTGCAGATGTT
____________________________________________________________
consensus TGAAAACTGTTTCAGAGAATCTTGAGAGAGCTTGAAAGCTGGCATTGTTCTGCAGATGTT
. : . : . : . : . : . :
rJMFF026E01+ AATACCATTGTTTTAGTGAGATTTTCTGAAACCAGAGGGAATAAAC
rJMSF023O04+ AATACCATTGTTTTAG
rJMSF005F09+ AATACCATTGTTTTAGTGAGATTTTCTGAAACCAGAGGGAATAAAC
rJMSF022O04+ AATACCATTGTTTTAGTGAGATTTTCTGAAACCAGAGGGAATAAACTGTATATTTTTCTG
____________________________________________________________
consensus AATACCATTGTTTTAGTGAGATTTTCTGAAACCAGAGGGAATAAACTGTATATTTTTCTG
. : . : . : . : . : . :
rJMSF022O04+ TGTGATTCAACCAAGAATTTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTATAATTG
____________________________________________________________
consensus TGTGATTCAACCAAGAATTTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTATAATTG