Contig 012611:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF008B23Sequence276000616 (4)781012611 (4)ref|XP_006361377.1|3e-83PREDICTED: putative CCA tRNA nucleotidyltransferase 2-like [Solanum tuberosum]
JMSF022H01Sequence117000616 (4)669012611 (4)ref|XP_004253361.2|1e-49PREDICTED: putative CCA tRNA nucleotidyltransferase 2 [Solanum lycopersicum]
JMSF023J10Sequence692000616 (4)ref|XP_011096868.1|3e-102PREDICTED: putative CCA tRNA nucleotidyltransferase 2 [Sesamum indicum]774012611 (4)ref|XP_006361377.1|3e-85PREDICTED: putative CCA tRNA nucleotidyltransferase 2-like [Solanum tuberosum]
JMSF035O14Sequence630000616 (4)ref|XP_011096868.1|2e-84PREDICTED: putative CCA tRNA nucleotidyltransferase 2 [Sesamum indicum]709012611 (4)ref|XP_006361377.1|9e-71PREDICTED: putative CCA tRNA nucleotidyltransferase 2-like [Solanum tuberosum]

Alignment

This contig is upended


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rJMSF008B23+                GTTTAGAAACCCCATNTNCAANGACCATAAAGCTAAAAAGATTCCAGTTGTGAG
rJMSF023J10+                                      GACCATAAAGCTAAAAAGATTCCAGTTGTGAG
                      ____________________________________________________________
consensus                   GTTTAGAAACCCCATNTNCAANGACCATAAAGCTAAAAAGATTCCAGTTGTGAG
 
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rJMSF008B23+          TTACATCTTCAGGAATTCTCTCAAGTTGAAAGCCAGTGATTCAGAAACAGTCACAAGTTT
rJMSF035O14+                             CTCAAGTTGAAAGCCAGTGATTCAGAAACAGTCACAAGTTT
rJMSF023J10+          TTACATCTTCAGGAATTCTCTCAAGTTGAAAGCCAGTGATTCAGAAACAGTCACAAGTTT
                      ____________________________________________________________
consensus             TTACATCTTCAGGAATTCTCTCAAGTTGAAAGCCAGTGATTCAGAAACAGTCACAAGTTT
 
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rJMSF008B23+          GCATAGTGTGACACAAAAGCTTGTATCATTGATTCCGTTTATTACTTCCAAAGATATAGA
rJMSF035O14+          GCATAGTGTGACACAAAAGCTTGTATCATTGATTCCGTTTATTACTTCCAAAGATATAGA
rJMSF023J10+          GCATAGTGTGACACAAAAGCTTGTATCATTGATTCCGTTTATTACTTCCAAAGATATAGA
rJMSF022H01+                                                            AAGATATAGA
                      ____________________________________________________________
consensus             GCATAGTGTGACACAAAAGCTTGTATCATTGATTCCGTTTATTACTTCCAAAGATATAGA
 
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rJMSF008B23+          AATTATTGAAGTGGATTGGAAAACAGAAACTATTGATGTTCCAGTTGCTGCAAAACGTAG
rJMSF035O14+          AATTATTGAAGTGGATTGGAAAACAGAAACTATTGATGTTCCAGTTGCTGCAAAACGTAG
rJMSF023J10+          AATTATTGAAGTGGATTGGAAAACAGAAACTATTGATGTTCCAGTTGCTGCAAAACGTAG
rJMSF022H01+          AATTANTGAAGTGGATTGG-AAACAGAAACTATTGATGTTCCAGTTGCTGCAAAACGTAG
                      ____________________________________________________________
consensus             AATTATTGAAGTGGATTGGAAAACAGAAACTATTGATGTTCCAGTTGCTGCAAAACGTAG
 
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rJMSF008B23+          AATACTGATTGGATTGCTGCTCCGTGAAATTAAAGAATTCTGGCGTGTTTCCCTGGTACT
rJMSF035O14+          AATACTGATTGGATTGCTGCTCCGTGAAATTAAAGAATTCTGGCGTGTTTCCCTGGTACT
rJMSF023J10+          AATACTGATTGGATTGCTGCTCCGTGAAATTAAAGAATTCTGGCGTGTTTCCCTGGTACT
rJMSF022H01+          AATACTGATTGGATTGCTGCTCCGTGAAATTAAAGAATTCTGGCGTGTTTCCCTGGTACT
                      ____________________________________________________________
consensus             AATACTGATTGGATTGCTGCTCCGTGAAATTAAAGAATTCTGGCGTGTTTCCCTGGTACT
 
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rJMSF008B23+          CTCGATGCTTTTATACCCTACAAATGTGGACACAGAGGAAAACATCGAATTGGAGAAGAG
rJMSF035O14+          CTCGATGCTTTTATACCCTACAAATGTGGACACAGAGGAAAACATCGAATTGGAGAAGAG
rJMSF023J10+          CTCGATGCTTTTATACCCTACAAATGTGGACACAGAGGAAAACATCGAATTGGAGAAGAG
rJMSF022H01+          CTCGATGCTTTTATNCCCTACAAATGTGGACACAGAGGAAAACATCGAATTGGAGAAGAG
                      ____________________________________________________________
consensus             CTCGATGCTTTTATACCCTACAAATGTGGACACAGAGGAAAACATCGAATTGGAGAAGAG
 
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rJMSF008B23+          AAGCAAATTATTTAAGACAATTGAGAATGACATACTCAATCTAGGCCTAGAAAGTGTCTG
rJMSF035O14+          AAGCAAATTATTTAAGACAATTGAGAATGACATACTCAATCTAGGCCTAGAAAGTGTCTG
rJMSF023J10+          AAGCAAATTATTTAAGACAATTGAGAATGACATACTCAATCTAGGCCTAGAAAGTGTCTG
rJMSF022H01+          AAGCAAATTNTTTAAGACAATTGAGAATGACATACTCAATCTAGGCCTAGAAAGTGTCTG
                      ____________________________________________________________
consensus             AAGCAAATTATTTAAGACAATTGAGAATGACATACTCAATCTAGGCCTAGAAAGTGTCTG
 
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rJMSF008B23+          GGAAGCGAAGCCGCTGGTGAATGGGAAGGAAATCATGAACATTTTGCAGATTAAATCTGG
rJMSF035O14+          GGAAGCGAAGCCGCTGGTGAATGGGAAGGAAATCATGAACATTTTGCAGATTAAATCTGG
rJMSF023J10+          GGAAGCGAAGCCGCTGGTGAATGGGAAGGAAATCATGAACATTTTGCAGATTAAATCTGG
rJMSF022H01+          GGAAGCGAAGCCGCTGGTGAATGGGAAGGAAATCATGAACATTTTGCAGATTAAATCTGG
                      ____________________________________________________________
consensus             GGAAGCGAAGCCGCTGGTGAATGGGAAGGAAATCATGAACATTTTGCAGATTAAATCTGG
 
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rJMSF008B23+          AGGACCAATTGTCAAAGAATGGCAACAAAAATTGTTGGAGTGGCAGCTTGCATGTCCTGC
rJMSF035O14+          AGGACCAATTGTCAAAGAATGGCAACAAAAATTGTTGGAGTGGCAGCTTGCATGTCCTGC
rJMSF023J10+          AGGACCAATTGTCAAAGAATGGCAACAAAAATTGTTGGAGTGGCAGCTTGCATGTCCTGC
rJMSF022H01+          AGGACCAATTGTCAAAGAATGGCAACAAAAATTGTTGGAGTGGCAGCTTGCATGTCCTGC
                      ____________________________________________________________
consensus             AGGACCAATTGTCAAAGAATGGCAACAAAAATTGTTGGAGTGGCAGCTTGCATGTCCTGC
 
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rJMSF008B23+          TGGGACTGCAGAAGAATGCATAGACTGGATGAAGGAGGCTAATTCAAAACGTGCTAGGAC
rJMSF035O14+          TGGGACTGCAGAAGAATGCATAGACTGGATGAAGGAGGCTAATTCAAAACGTGCTAGGAC
rJMSF023J10+          TGGGACTGCAGAAGAATGCATAGACTGGATGAAGGAGGCTAATTCAAAACGTGCTAGGAC
rJMSF022H01+          TGGGACTGCAGAAGAATGCATAGACTGGATGAAGGAGGCTAATTCAAAACGTGCTAGGAC
                      ____________________________________________________________
consensus             TGGGACTGCAGAAGAATGCATAGACTGGATGAAGGAGGCTAATTCAAAACGTGCTAGGAC
 
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rJMSF008B23+          AGAGTAATGGGGAGATCAATTGATTGAACAAGTAATATATCACAATTGTAGCACACTTTA
rJMSF035O14+          AGAGTAATGGGGAGATCAATTGATTGAACAAGTAATATATCACAATTGTAGCACACTTTA
rJMSF023J10+          AGAGTAATGGGGAGATCAATTGATTGAACAAGTAATATATCACAATTGTAGCACACTTTA
rJMSF022H01+          AGAGTAATGGGGAGATCAATTGATTGAACAAGTAATATATCACAATTGTAGCACACTTTA
                      ____________________________________________________________
consensus             AGAGTAATGGGGAGATCAATTGATTGAACAAGTAATATATCACAATTGTAGCACACTTTA
 
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rJMSF008B23+          ATGTTGACACGGTAAGTGGTTAGAATCTTTCTGTTAGAAAAAAGCAGCATTCCAAAAAGT
rJMSF035O14+          ATGTTGACACGGTAAGTGGTTAGAATCTTTCTGTTAGAAAAAAGCAGCATTCCAAAAAGT
rJMSF023J10+          ATGTTGACACGGTAAGTGGTTAGAATCTTTCTGTTAGAAAAAAGCAGCATTCCAAAAAGT
rJMSF022H01+          ATGTTGACACGGTAAGTGGTTAGAATCTTTCTGTTAGAAAAAAGCAGCATTCCAAAAAGT
                      ____________________________________________________________
consensus             ATGTTGACACGGTAAGTGGTTAGAATCTTTCTGTTAGAAAAAAGCAGCATTCCAAAAAGT
 
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rJMSF008B23+          ATTTATTTCCTAGTTGCACAATACACAAATAGGTAGCATTCAAGATCACCAGCAGAAGTG
rJMSF035O14+          ATTTATTTCCTAGTTGCACAATACACAAATAGGTAGCATTCAAGATCACCAGCAGAAGTG
rJMSF023J10+          ATTTATTTCCTAGTTGCACAATACACAAATAGGTAGCATTCAAGATCACCAGCAGAAGTG
rJMSF022H01+          ATTTATTTCCTAGTTGCACAATACACAAATAGGTAGCATTCAAGATCACCAGCAGAAGTG
                      ____________________________________________________________
consensus             ATTTATTTCCTAGTTGCACAATACACAAATAGGTAGCATTCAAGATCACCAGCAGAAGTG
 
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rJMSF008B23+          AAACCAA                                                     
rJMSF035O14+          AAACCAA                                                     
rJMSF023J10+          AAACCAA                                                     
rJMSF022H01+          AAACCAATATTGGAGAAATGTCTATGAGAAATGAATAATATTATATGCATTCTCGCTTTT
                      ____________________________________________________________
consensus             AAACCAATATTGGAGAAATGTCTATGAGAAATGAATAATATTATATGCATTCTCGCTTTT