Contig 012608:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF022C14-                                            TATTANACCTGGTTAAGCTGGGAAGC
                      ____________________________________________________________
consensus                                               TATTANACCTGGTTAAGCTGGGAAGC
 
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rJMSF022C14-          TTTTCAAGGTTACTACATCCATCAAAAATCAAGTCCACAAGGTTTGTATGATTTCCAAAA
                      ____________________________________________________________
consensus             TTTTCAAGGTTACTACATCCATCAAAAATCAAGTCCACAAGGTTTGTATGATTTCCAAAA
 
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JMFF023P13+                          TTCAATTTCTCACACTTGGAAAGCACTAAATATTTCAAATTGGGC
rJMSF022C14-          GATGAGTAGATCTCTTTCAATTTCTCATACTTTGAAAGGTCTAGATATTTCAAATTTGGC
                      ____________________________________________________________
consensus             GATGAGTAGATCTCTTTCAATTTCTCATACTTTGAAAGGTCTAGATATTTCAAATTTGGC
 
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JMFF023P13+           ATCATAGCAAAATTTGGTGTTTCAAACAAAGAGCTACAATTTCTAATATCCAAACGGGTA
rJMSF022C14-          ATCATAACAAAATTTGGTGTTTCTAACAAAGAGCTACNATTTCAAAGATCCAAATCGGTA
                      ____________________________________________________________
consensus             ATCATAGCAAAATTTGGTGTTTCTAACAAAGAGCTACAATTTCTAATATCCAAATGGGTA
 
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rJMFF023P13-                       CCTGGTTAAAGTTGAAAAGCTTTTCAAGGTTACAACATCCATCAAAA
JMFF023P13+           ATGCTCTTTATTTCCTGGTTAAAGCTGGGAAGCCTTTCATGGTTACTACATCCATCAAAA
rJMSF022C14-          ACGCTCTTCATTTCCTGGTTAAAGTTGAAAAGCTTTTCAAGGTTACAACATCCATCAGAA
                      ____________________________________________________________
consensus             ATGCTCTTTATTTCCTGGTTAAAGTTGAAAAGCTTTTCAAGGTTACAACATCCATCAAAA
 
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rJMFF023P13-          ACCAATTCCATAAGTTCCNAAANATTTTGCAAAAATGGGNGGAACTCTTTCAATTTTCTC
JMFF023P13+           ACCAATTTCACAAATTCCGTTAAATTTCCCAAAGATGGGTGGATCTCTTTCAA-TTTCTC
rJMSF022C14-          ACCAATTCCATAAGTTCCGAAAGATTTTGCAAAAATGGGTGGAACTCTTTCAATTTTCTC
                      ____________________________________________________________
consensus             ACCAATTCCATAAGTTCCGAAAGATTTTGCAAAAATGGGTGGAACTCTTTCAATTTTCTC
 
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rJMFF023P13-          ACACTTTGGAAGTTGTAAGTATTCCAAATTTGGCATCATANCAAAATTTGGAGTTTCTAA
JMSF022C14+                              TATTTCAAATTNGGCATCATAGCAAAATTNGGCGTTTCTAA
JMFS091D11+                              TATTCCAAATTTGTCATCATAGCAAAATTTGGTGTTTCTAA
JMFF023P13+           ACAGTTTGAAAGCTCTAAATATTTCAAATTTGGCATCATAGCAAAATTTTGTGTTTCTAA
rJMSF022C14-          ACACTTTGGAAGTTGTAAGTATTCCAAATTTGGCATCATAGCAAAATTTGGAGTTTCTAA
                      ____________________________________________________________
consensus             ACACTTTGGAAGTTGTAAGTATTCCAAATTTGGCATCATAGCAAAATTTGGTGTTTCTAA
 
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rJMFF023P13-          CAAANAGCTACAATTTCAAANATCCAATCNGGAAANGTTCTTCATTTCCTGGTTAAAGCT
JMSF022C14+           CAAAGAGCTACAATTTTTAATATCCAAGCGGATAATGCTCTTTATTTCCTGGTTAAAGTT
JMFS091D11+           CAACGAGCTACAATTTCAAAGATCCAAACTGGAAATGTTTTTTATTTCCTGATCAAAGCT
JMFF023P13+           CAAAGAGCTACAATTTTTAATATCCAAACGGGTAATGCTCTTTATTTCCTGGTTAAAGCT
rJMSF022C14-          CAAAGAGCTACAATTTCAAAGATCCAATCTGGTAATGTTCTTCATTTCCTGGTTNAAGCT
                      ____________________________________________________________
consensus             CAAAGAGCTACAATTTCAAAGATCCAATCTGGTAATGTTCTTTATTTCCTGGTTAAAGCT
 
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rJMFF023P13-          GAAAAGCTTTTCAAGGTTACTACATCCATCAAAAACCAATTCCATAAGTTCCNANANATT
JMSF022C14+           GGGAAGCTTTTCAAGGTTACTACATCCATCAAAATCCAATTCCACAAGTTCCGTAAGATT
JMFS091D11+           GGGAAGCTTTTCAAGGTTACTACATCCATCAAAAACCAATTCCACAAGTTTCGTTAGATT
JMFF023P13+           GGGAAGCTTTTCATGGTTACTACATCCATCAAAAACCAATTTCACAAGTTCTGTAAGATT
rJMSF022C14-          GAAAAACTTTTCAAGGTTACTACATCCATCAGAAACCAATTCCATAAGTTCCGAGAGATT
                      ____________________________________________________________
consensus             GGGAAGCTTTTCAAGGTTACTACATCCATCAAAAACCAATTCCACAAGTTCCGTAAGATT
 
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rJMFF023P13-          TTACAAAAATGGGNGGAACTCTTTCAATTTTCTCACACTTTGGAAGTTGTAAGNATTCCA
JMSF022C14+           TCCCATAGATTGGTGTATCTCTTTCAA-TTTCTCACACCCTGAAAGTAGTAAATATTCCA
JMFS091D11+           TGCCATAGATGGGTTGATCTCTTTCAA-TTTCTCACAATTTGAAAGTTGCAAGTATTCCA
JMFF023P13+           TCCCAAAGATGGGTGGATGTCTTTCAA-TTTCTCACACTTTGAAAGTAGTAAATATTCCA
rJMSF022C14-          TTACAAAAATGGGTGGAACTCTTTCAATTTTCTCACACTTTGGAAGTTGTAAGTATTCCA
                      ____________________________________________________________
consensus             TTCCAAAGATGGGTGGATCTCTTTCAA-TTTCTCACACTTTGAAAGTTGTAAGTATTCCA
 
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rJMFF023P13-          AATTTGTCATCATANCAAAATTTGGGGTTTCTAACAACGAGCTACAATTTCAAAGATCCA
JMSF022C14+           AATTTGGCATCATAGCAAAATTTGGCGTTTCTAATAAAGAGCCACAATTTCTAATATCCA
JMFS091D11+           AATTTGGCATCATAGCAAAATTTGGTGTTTCTAACAATGAGCAACAATTTCTAATATCCA
JMFF023P13+           AATTTGGCATCATAGCAAAATTTGGTGTTTCTAACAAAGAGCTACAATTTC         
rJMSF022C14-          AATTTGTCATCATAGCAAAATTTGGTGTTTCTAACAACGAGCTACAATTTCAAAGATCCN
                      ____________________________________________________________
consensus             AATTTGGCATCATAGCAAAATTTGGTGTTTCTAACAACGAGCTACAATTTCTAATATCCA
 
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rJMFF023P13-          AACTGGAAATGTTTTTTATTTCCTGATCAAAGCTGGGAAGCTTTTCAAGGTTACTACATC
JMSF022C14+           AGCGGCTAATGCTCTCTATTTCCTGGTTAAAGCTGGGAAGCTTTTCAAGGTTACTACATC
JMFS091D11+           AACGGGAAACGCTCTTTATTTCCTGGTTAAAAATGGGAAGCATTTCAAGGTTACTACATC
rJMSF022C14-          AACTGGAAATGTTTTTTATTTCCTGATCNAAGCTGGGAAGCTTTTCAAGGTTACTACATC
                      ____________________________________________________________
consensus             AACTGGAAATGTTTTTTATTTCCTGGTTAAAGCTGGGAAGCTTTTCAAGGTTACTACATC
 
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rJMFF023P13-          CATCAAAAACCAATTCCACAAGTTTCGTTANATTTGCCATANATGGGTTGATCTCTTTCA
JMSF022C14+           CATCAAAATCCAATTCCACAAGTTCCGTAAGATTTCCCAAAGATGAGTGGATCTCTTTCA
JMFS091D11+           CATCAAAAACCAATTCCACAAGTTCCGTTAGATTTCCCAAAGATGGGTGGATCTCTTTCA
rJMSF022C14-          CATCAAAAACCAATTCCNCAAGTTTCGTTAGATTNGCCATAGATGGGTTGATCTCTTTCA
                      ____________________________________________________________
consensus             CATCAAAAACCAATTCCACAAGTTTCGTTAGATTTGCCATAGATGGGTTGATCTCTTTCA
 
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rJMFF023P13-          ATTTCTCNCAATTTGAAAGTTGCAAGTATTCCAAATTTGGCATCATA             
JMSF022C14+           ATTTCTCACACTTTGAAAGTAGTAAATATTCCAAATTTGGCATCATA             
JMFS091D11+           ATTCCTCACACTTTGAAAGGTCTAAATATTTCAAATTTGGCATCATA             
rJMSF022C14-          ATTCCTCACAATTTGAAAGTTGCAAGTATTCCAAATTTGGCATCATAGCAAAATTNGGNG
                      ____________________________________________________________
consensus             ATTTCTCACACTTTGAAAGTTGTAAGTATTCCAAATTTGGCATCATAGCAAAATTNGGNG
 
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rJMSF022C14-          NTTCNAACAATGAGCAACANTTTNAAAATCCAACGGGAACGCTCTTTATTCCNGGTNAAA
                      ____________________________________________________________
consensus             NTTCNAACAATGAGCAACANTTTNAAAATCCAACGGGAACGCTCTTTATTCCNGGTNAAA