Contig 012605:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF021L16Sequence679012605 (2)gb|KDO53248.1|1e-92hypothetical protein CISIN_1g021155mg [Citrus sinensis]791012605 (2)ref|XP_006363046.1|6e-111PREDICTED: putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase-lik

Alignment

This contig is upended


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JMSF021L16-                                            GGTCCATCGTTGCCTCAAGCCGACTAG
                      ____________________________________________________________
consensus                                              GGTCCATCGTTGCCTCAAGCCGACTAG
 
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JMSF021L16-           CCCTCAGCCTCGTTGCCTCTTTCAGACTTCAGCAATCCGATTCGCCGGTCGCTCCCTCTC
                      ____________________________________________________________
consensus             CCCTCAGCCTCGTTGCCTCTTTCAGACTTCAGCAATCCGATTCGCCGGTCGCTCCCTCTC
 
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JMSF021L16-           TGCTGGGAACAGTCGAACAGCGTGCCCGACAGTCGTCGTCGTCGCTCCCTTTGTGTCTGA
                      ____________________________________________________________
consensus             TGCTGGGAACAGTCGAACAGCGTGCCCGACAGTCGTCGTCGTCGCTCCCTTTGTGTCTGA
 
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JMSF021L16-           CGTGCTTCAGCAACCGAACAGGCGAACCTCTAAACCAGTGAGTTTAGTCGTGTGTGTGAC
                      ____________________________________________________________
consensus             CGTGCTTCAGCAACCGAACAGGCGAACCTCTAAACCAGTGAGTTTAGTCGTGTGTGTGAC
 
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JMSF021L16-           TGATTGAATTAGGGGTTCACCTTCACTTGTTAGCAGACTTACAGAAGTTGGGGATATGGG
                      ____________________________________________________________
consensus             TGATTGAATTAGGGGTTCACCTTCACTTGTTAGCAGACTTACAGAAGTTGGGGATATGGG
 
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JMSF021L16-           AAAAGCTTCAAGGGATAAAAGGGATATTTATTATCGGAAAGCTAAAGAGGAAGGGTGGCG
                      ____________________________________________________________
consensus             AAAAGCTTCAAGGGATAAAAGGGATATTTATTATCGGAAAGCTAAAGAGGAAGGGTGGCG
 
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JMSF021L16-           TGCAAGGAGTGCCTTTAAACTCCTTCAGATTGATGAGGAGTTTAACATATTTGAAGGGGT
                      ____________________________________________________________
consensus             TGCAAGGAGTGCCTTTAAACTCCTTCAGATTGATGAGGAGTTTAACATATTTGAAGGGGT
 
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JMSF021L16-           GAAACGTGTCGTGGACTTGTGTGCAGCTCCTGGTAGCTGGAGTCAGGTTTTGAGCCGGAA
                      ____________________________________________________________
consensus             GAAACGTGTCGTGGACTTGTGTGCAGCTCCTGGTAGCTGGAGTCAGGTTTTGAGCCGGAA
 
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JMSF021L16-           ATTATATCTCCCAGCAAAGCTGTCCCCAGATTCAACGGACAATGATCTCCCACTTATTGT
                      ____________________________________________________________
consensus             ATTATATCTCCCAGCAAAGCTGTCCCCAGATTCAACGGACAATGATCTCCCACTTATTGT
 
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JMSF021L16-           AGCCATTGATTTGCAGCCCATGGCTCCAATTGAAGGTGTGATTCAAGTACAGGGTGATAT
                      ____________________________________________________________
consensus             AGCCATTGATTTGCAGCCCATGGCTCCAATTGAAGGTGTGATTCAAGTACAGGGTGATAT
 
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JMSF021L16-           AACAAATGCTAGAACGGCTGAAGTGGTAATTAGACATTTTGATGGATGCAAAGCTGACCT
rJMSF021L16+                                                            AAGCTGACCT
                      ____________________________________________________________
consensus             AACAAATGCTAGAACGGCTGAAGTGGTAATTAGACATTTTGATGGATGCAAAGCTGACCT
 
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JMSF021L16-           GGTTGTTTGTGATGGTGCACCTGATGTTACCGGACTCCATGATATGGATGAA        
rJMSF021L16+          GNTTGTTTGTGATGGTGCACCTGATGTTACCGGACTCCATGATATGGATGAATTTGTTCA
                      ____________________________________________________________
consensus             GGTTGTTTGTGATGGTGCACCTGATGTTACCGGACTCCATGATATGGATGAATTTGTTCA
 
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rJMSF021L16+          GTCCCAAACTCATATTGGCAGGTTTGACAATAGTTACTCACATACTAAAAAGTGGTGGAA
                      ____________________________________________________________
consensus             GTCCCAAACTCATATTGGCAGGTTTGACAATAGTTACTCACATACTAAAAAGTGGTGGAA
 
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rJMSF021L16+          AGTTCATAGCAAAAATTTTTCGAGGGAAAGATACAAGCCTTCTTTATTGTCAGCTAAAAC
                      ____________________________________________________________
consensus             AGTTCATAGCAAAAATTTTTCGAGGGAAAGATACAAGCCTTCTTTATTGTCAGCTAAAAC
 
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rJMSF021L16+          TTTTTTTCACTGAAGTTACNTTTGCTAAGCCCAAAAGCAGTCGTAATTCAAGTATAGAAG
                      ____________________________________________________________
consensus             TTTTTTTCACTGAAGTTACNTTTGCTAAGCCCAAAAGCAGTCGTAATTCAAGTATAGAAG
 
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rJMSF021L16+          CATTTGCAGTCTGTGAGAACTATTCTCCTCCTGAAGGATTTAATGAGAAAGACCTGTATC
                      ____________________________________________________________
consensus             CATTTGCAGTCTGTGAGAACTATTCTCCTCCTGAAGGATTTAATGAGAAAGACCTGTATC
 
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rJMSF021L16+          GTCTCCNTGAGAAGGTTGGAAGTCCATCTGGTGTAGAGGATCTAGATTGTAGTAGTGGAT
                      ____________________________________________________________
consensus             GTCTCCNTGAGAAGGTTGGAAGTCCATCTGGTGTAGAGGATCTAGATTGTAGTAGTGGAT
 
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rJMSF021L16+          GGCTGGAAGGACCAAATAAGGTGTATATCCCATTCTTGGCTTGTGGGGACCTCAGCGGGT
                      ____________________________________________________________
consensus             GGCTGGAAGGACCAAATAAGGTGTATATCCCATTCTTGGCTTGTGGGGACCTCAGCGGGT
 
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rJMSF021L16+          ATGACTCTGACCGCTCATATCCCCTTCCAAAAAGTGCAGATGGAACTTATCAGAGCTTAG
                      ____________________________________________________________
consensus             ATGACTCTGACCGCTCATATCCCCTTCCAAAAAGTGCAGATGGAACTTATCAGAGCTTAG
 
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rJMSF021L16+          ATCCTGTACAACCTCCAATTGCACCGCCTTACAAGAGAGCTCTCGAAATGAAGAAAGCTC
                      ____________________________________________________________
consensus             ATCCTGTACAACCTCCAATTGCACCGCCTTACAAGAGAGCTCTCGAAATGAAGAAAGCTC
 
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rJMSF021L16+          AAAGTCAGGGTGTCCGGGATCTCGAGAAGCTTTCCCTTGGCCCCTAAGTGTTGTATCCAC
                      ____________________________________________________________
consensus             AAAGTCAGGGTGTCCGGGATCTCGAGAAGCTTTCCCTTGGCCCCTAAGTGTTGTATCCAC
 
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rJMSF021L16+          AAATAGTTTCATATACTAATTTAGAAACCACAGGGCATGGATGAGTCATTTAGAAACCAA
                      ____________________________________________________________
consensus             AAATAGTTTCATATACTAATTTAGAAACCACAGGGCATGGATGAGTCATTTAGAAACCAA
 
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rJMSF021L16+          AAGAAGGCTTTTGTTTGTAATAGTTGAGTTGGATGAGTCTTTTTTCTGGTGTACCATTTA
                      ____________________________________________________________
consensus             AAGAAGGCTTTTGTTTGTAATAGTTGAGTTGGATGAGTCTTTTTTCTGGTGTACCATTTA
 
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rJMSF021L16+          TAAGGTTTTGAAATTTTGGTAACTACTGATTCTTTGTACNTGTTAACCTTTAAATCCAAC
                      ____________________________________________________________
consensus             TAAGGTTTTGAAATTTTGGTAACTACTGATTCTTTGTACNTGTTAACCTTTAAATCCAAC