Contig 012602:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS018F09Sequence522012602 (3)ref|XP_006385675.1|2e-17hypothetical protein POPTR_0003s09470g [Populus trichocarpa] gb|ERP63472.1| hypo
JMSF021E01Sequence650012602 (3)ref|XP_011070329.1|2e-46PREDICTED: homeobox-leucine zipper protein HDG5 isoform X2 [Sesamum indicum]743012602 (3)

Alignment

This contig is upended


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JMSF021E01-                                                              GAGAGTGTA
                      ____________________________________________________________
consensus                                                                GAGAGTGTA
 
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JMSF021E01-           GAGCTGATGTTGCAGGAGAGCTGCGCGGATGATTCCGGCAGCCTGGTGGTGTACGCCACC
                      ____________________________________________________________
consensus             GAGCTGATGTTGCAGGAGAGCTGCGCGGATGATTCCGGCAGCCTGGTGGTGTACGCCACC
 
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JMSF021E01-           ATGGACGTCGACGCCATCCAGCTCGCCATGAGCGGCGACGACCCCTCCAGCGTGCCGCTT
                      ____________________________________________________________
consensus             ATGGACGTCGACGCCATCCAGCTCGCCATGAGCGGCGACGACCCCTCCAGCGTGCCGCTT
 
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JMSF021E01-           CTGCCGTTAGGCTTCGTCATAACACCCATGGCTGCCGCCGCCACCGCCACGGCGGTCCAG
                      ____________________________________________________________
consensus             CTGCCGTTAGGCTTCGTCATAACACCCATGGCTGCCGCCGCCACCGCCACGGCGGTCCAG
 
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JMSF021E01-           TCATCTGAAAGTGGATGCCTGCCGGAATCCGGCTGCCTCCTCACCGTGGCGCTGCAGGTG
                      ____________________________________________________________
consensus             TCATCTGAAAGTGGATGCCTGCCGGAATCCGGCTGCCTCCTCACCGTGGCGCTGCAGGTG
 
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JMSF021E01-           TTGGCCAGCACCATGCCGACGGCGAAGCTCAACCTCTCCAGTGTCACCGCCATCAACCAC
                      ____________________________________________________________
consensus             TTGGCCAGCACCATGCCGACGGCGAAGCTCAACCTCTCCAGTGTCACCGCCATCAACCAC
 
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JMSF021E01-           CACCTCTGCAACACCGTGCAGCAAATCAACGCCGCCCTTAGCGGCCTGGACGACACAGCC
                      ____________________________________________________________
consensus             CACCTCTGCAACACCGTGCAGCAAATCAACGCCGCCCTTAGCGGCCTGGACGACACAGCC
 
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JMSF021E01-           GCCACCACCACCGCCCAGCCGTTCCCAGCGCCGCCGTCTCCGCCGCCGGTTAAGGAAACC
JMFS018F09+                                       CGCCGCTGTCTCCGCCGCCGGTTAAGGAAACC
rJMSF021E01+                                               CTCCGCCGCCGGTTAAGGAAACC
                      ____________________________________________________________
consensus             GCCACCACCACCGCCCAGCCGTTCCCAGCGCCGCTGTCTCCGCCGCCGGTTAAGGAAACC
 
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JMSF021E01-           GACGACGAGAACCACCGCAGTTCCTAATTACCCAAAACCTCTCTCTTGAAATCGATCGAG
JMFS018F09+           GACGACGAGAACCACCGCAGTTCCTAATTACCCAAAACCTCTCTCTTGAAATCGATCGAG
rJMSF021E01+          GACGACGAGAACCACCGCAGTTCCTAATTACCCAAAACCTCTCTCTTGAAATCGATCGAG
                      ____________________________________________________________
consensus             GACGACGAGAACCACCGCAGTTCCTAATTACCCAAAACCTCTCTCTTGAAATCGATCGAG
 
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JMSF021E01-           AGAGGTTCTGAGTAATTTGTGAAAATCTTGGAGGGTAGACTTGTCAAAACAACAAAAGTA
JMFS018F09+           AGAGGTTCTGAGTAATTTGTGAAAATCTTGGAGGGTAGACTTGTCAAAACAACAAAAGTA
rJMSF021E01+          AGAGGTTCTGAGTAATTTGTGAAAATCTTGGAGGGTAGACTTGTCAAAACAACAAAAGTA
                      ____________________________________________________________
consensus             AGAGGTTCTGAGTAATTTGTGAAAATCTTGGAGGGTAGACTTGTCAAAACAACAAAAGTA
 
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JMSF021E01-           TTGTTGGTAGATAGGAGTAGTAATTGCCCCTCTGCATGTGCATGAACCATATTGCTGGGT
JMFS018F09+           TTGTTGGTAGATAGGAGTAGTAATTGCCCCTCTGCATGTGCATGAACCATATTGCTGGGT
rJMSF021E01+          TTGTTGGTAGATAGGAGTAGTAATTGCCCCTCTGCATGTGCATGAACCATATTGCTGGGT
                      ____________________________________________________________
consensus             TTGTTGGTAGATAGGAGTAGTAATTGCCCCTCTGCATGTGCATGAACCATATTGCTGGGT
 
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JMSF021E01-           AAATAAATGATAAGAGACAAGTAGTTCTTTAGGGTTAATTA                   
JMFS018F09+           AAATAAATGATAAGAGACAAGTAGTTCTTTAGGGTTAATTAGGTAATAGTGTAGGCTGGC
rJMSF021E01+          AAATAAATGATAAGAGACAAGTAGTTCTTTAGGGTTAATTAGGTAATAGTGTAGGCTGGC
                      ____________________________________________________________
consensus             AAATAAATGATAAGAGACAAGTAGTTCTTTAGGGTTAATTAGGTAATAGTGTAGGCTGGC
 
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JMFS018F09+           CCTACTATAATGTTACTCTCACTCGGCCCGGCCTGGCCCGACCCTATAATATTTTTCCGC
rJMSF021E01+          CCTACTATAATGTTACTCTCACTCGGCCCGGCCTGGCCCGACCCTATAATATTTTTCCGC
                      ____________________________________________________________
consensus             CCTACTATAATGTTACTCTCACTCGGCCCGGCCTGGCCCGACCCTATAATATTTTTCCGC
 
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JMFS018F09+           AAAATTGACTTGAATTTATCC                                       
rJMSF021E01+          AAAATTGACTTGAATTTATCCATGTCCTCGTACCTTAAAATTTCACTAGTTTGAGGACAT
                      ____________________________________________________________
consensus             AAAATTGACTTGAATTTATCCATGTCCTCGTACCTTAAAATTTCACTAGTTTGAGGACAT
 
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rJMSF021E01+          CAATAAACTTAAGTTAATTTTGCATAAAAATGTTATCGAGAGTGCAAAAAGAGTAACATT
                      ____________________________________________________________
consensus             CAATAAACTTAAGTTAATTTTGCATAAAAATGTTATCGAGAGTGCAAAAAGAGTAACATT
 
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rJMSF021E01+          ATTCTCTCGTCATCAATTATTGTTGTTTTTGTGAATGGATGAAAACTTTTGCTAGCAAGA
                      ____________________________________________________________
consensus             ATTCTCTCGTCATCAATTATTGTTGTTTTTGTGAATGGATGAAAACTTTTGCTAGCAAGA
 
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rJMSF021E01+          CAGGTGGGATCGAGATCGAGTTAACAACGATGATGTGGTAGAGAAGTCAAGAGCGCACCA
                      ____________________________________________________________
consensus             CAGGTGGGATCGAGATCGAGTTAACAACGATGATGTGGTAGAGAAGTCAAGAGCGCACCA
 
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rJMSF021E01+          GATAAAATCCTTGCTGGCTGGCCTAGCTAGGCTAACCATTAATGCTTCCGGCCAGCTAGC
                      ____________________________________________________________
consensus             GATAAAATCCTTGCTGGCTGGCCTAGCTAGGCTAACCATTAATGCTTCCGGCCAGCTAGC
 
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rJMSF021E01+          AAGGATGGTGGTTCGGGAATTGACTTCTTGTCTAGTTGTCTTGTAGTGTTTGACCGTTTC
                      ____________________________________________________________
consensus             AAGGATGGTGGTTCGGGAATTGACTTCTTGTCTAGTTGTCTTGTAGTGTTTGACCGTTTC
 
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rJMSF021E01+          TTGTATTTCTTTGAAATTTCTACCTTTGGTACTCAATTTAATTATATTGACTTCTGTTTG
                      ____________________________________________________________
consensus             TTGTATTTCTTTGAAATTTCTACCTTTGGTACTCAATTTAATTATATTGACTTCTGTTTG