| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF037H05 | Sequence | 612 | 006693 (6) | ref|XP_009621605.1| | 2e-69 | PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal isoform X2 [Nicotiana tomento | 706 | 012594 (4) | ref|XP_008353771.1| | 7e-101 | PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Malus domestica] |
| JMFF040O02 | Sequence | 497 | 006693 (6) | ref|XP_009621605.1| | 6e-52 | PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal isoform X2 [Nicotiana tomento | 706 | 012594 (4) | ref|XP_008353771.1| | 4e-106 | PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Malus domestica] |
| JMFF046C04 | Sequence | 591 | 006693 (6) | ref|XP_009621605.1| | 3e-82 | PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal isoform X2 [Nicotiana tomento | 571 | 012594 (4) | ref|XP_002525155.1| | 4e-62 | acyl-CoA oxidase, putative [Ricinus communis] gb|EEF37282.1| acyl-CoA oxidase, p |
| JMSF020A10 | Sequence | 692 | 006693 (6) | ref|XP_009621605.1| | 9e-133 | PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal isoform X2 [Nicotiana tomento | 785 | 012594 (4) | ref|XP_008353771.1| | 9e-107 | PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Malus domestica] |
This contig is upended
. : . : . : . : . : . :
rJMSF020A10+ GTAGG
____________________________________________________________
consensus GTAGG
. : . : . : . : . : . :
rJMSF020A10+ GAAGCTTGCGGTGGGCAAGGCTTGAAAACTGAAAACCGGATAGGCCAAGCAAAAAGTGAA
____________________________________________________________
consensus GAAGCTTGCGGTGGGCAAGGCTTGAAAACTGAAAACCGGATAGGCCAAGCAAAAAGTGAA
. : . : . : . : . : . :
rJMFF037H05+ TTATGCAACAGGTTAGCAAGG
rJMFF040O02+ GGGCGACAACAATGTTCTTATGCAACAGGTTAGCAAGG
rJMSF020A10+ TATGATGTACACTCTACTTTGAGGGCGACAACAATGTTCTTATGCAACAGGTTAGCAAGG
____________________________________________________________
consensus TATGATGTACACTCTACTTTGAGGGCGACAACAATGTTCTTATGCAACAGGTTAGCAAGG
. : . : . : . : . : . :
rJMFF037H05+ CGCTTCTTGCAGAATATGTCACATGCAAAAGGAAGGGCAAGGCATTTAAAGGATTGGGAT
rJMFF040O02+ CGCTTCTTGCAGAATATGTCACATGCAAAAGGAAGGGCAAGGCATTTAAAGGATTGGGAT
rJMSF020A10+ CGCTTCTTGCAGAATATGTCACATGCAAAAGGAAGGGCAAGGCATTTAAAGGATTGGGAT
____________________________________________________________
consensus CGCTTCTTGCAGAATATGTCACATGCAAAAGGAAGGGCAAGGCATTTAAAGGATTGGGAT
. : . : . : . : . : . :
rJMFF037H05+ TGGAACACATGAATGAACCTTGTCCTGTTATACCTTCTAAGCTTTCTAGTGATACCCTAG
rJMFF040O02+ TGGAACACATGAATGAACCTTGTCCTGTTATACCTTCTAAGCTTTCTAGTGATACCCTAG
rJMSF020A10+ TGGAACACATGAATGAACCTTGTCCTGTTATACCTTCTAAGCTTTCTAGTGATACCCTAG
____________________________________________________________
consensus TGGAACACATGAATGAACCTTGTCCTGTTATACCTTCTAAGCTTTCTAGTGATACCCTAG
. : . : . : . : . : . :
rJMFF037H05+ GGAGCATCCAATTCCAGAATGACATATTTTGCCTGCGAGAGCGACACCTTCTGAATCTCT
rJMFF040O02+ GGAGCATCCAATTCCAGAATGACATATTTTGCCTGCGAGAGCGACACCTTCTGAATCTCT
rJMSF020A10+ GGAGCATCCAATTCCAGAATGACATATTTTGCCTGCGAGAGCGACACCTTCTGAATCTCT
____________________________________________________________
consensus GGAGCATCCAATTCCAGAATGACATATTTTGCCTGCGAGAGCGACACCTTCTGAATCTCT
. : . : . : . : . : . :
rJMFF037H05+ TTGCTGCTGAAGTTTCACAACACCAAGCGAGCGGTGAAGGCAAAGAAAATGCATTTTTGT
rJMFF040O02+ TTGCTGCTGAAGTTTCACAACACCAAGCGAGCGGTGAAGGCAAAGAAAATGCATTTTTGT
rJMFF046C04+ AAGTTTCACAACACCAAGCGAGCGGTGAAGGCAAAGAAAATGCATTTTGTT
rJMSF020A10+ TTGCTGCTGAAGTTTCACAACACCAAGCGAGCGGTGAAGGCAAAGAAAATGCATTTTTGT
____________________________________________________________
consensus TTGCTGCTGAAGTTTCACAACACCAAGCGAGCGGTGAAGGCAAAGAAAATGCATTTTTGT
. : . : . : . : . : . :
rJMFF037H05+ TGAGTTACCAGCTGGCTGAAGACTTGGGTAGAGCCTTTGCAGACCGTACAATTTACCATA
rJMFF040O02+ TGAGTTACCAGCTGGCTGAAGACTTGGGTAGAGCCTTTGCAGACCGTACAATTTACCATA
rJMFF046C04+ TGAGTTACCAGCTGGCTGAAGACTTGGGTAGAGCCTTTGCAGACCGTACAATTTACCATA
rJMSF020A10+ TGAGTTACCAGCTGGCTGAAGACTTGGGTAGAGCCTTTGCAGACCGTACAATTTACCATA
____________________________________________________________
consensus TGAGTTACCAGCTGGCTGAAGACTTGGGTAGAGCCTTTGCAGACCGTACAATTTACCATA
. : . : . : . : . : . :
rJMFF037H05+ CTTTTGTAAATGCTGAGCCTTCTGTAAACTCCGGTTCGCTAAAGAATATACTCAGTCTCG
rJMFF040O02+ CTTTTGTAAATGCTGAGCCTTCTGTAAACTCCGGTTCGCTAAAGAATATACTCAGTCTCG
rJMFF046C04+ CTTTTGTAAATGCTGAGCCTTCTGTAAACTCCGGTTCGCTAAAGAATATACTCAGTCTCG
rJMSF020A10+ CTTTTGTAAATGCTGAGCCTTCTGTAAACTCCGGTTCGCTAAAGAATATACTCAGTCTCG
____________________________________________________________
consensus CTTTTGTAAATGCTGAGCCTTCTGTAAACTCCGGTTCGCTAAAGAATATACTCAGTCTCG
. : . : . : . : . : . :
rJMFF037H05+ TAAGATCAATGTATGCTATGGCGATTTTGGACGAAGATGCTGCATTCCTGCGATATGGAT
rJMFF040O02+ TAAGATCAATGTATGCTATGGCGATTTTGGACGAAGATGCTGCATTCCTGCGATATGGAT
rJMFF046C04+ TAAGATCAATGTATGCTATGGCGATTTTGGACGAAGATGCTGCATTCCTGCGATATGGAT
rJMSF020A10+ TAAGATCAATGTATGCTATGGCGATTTTGGACGAAGATGCTGCATTCCTGCGATATGGAT
____________________________________________________________
consensus TAAGATCAATGTATGCTATGGCGATTTTGGACGAAGATGCTGCATTCCTGCGATATGGAT
. : . : . : . : . : . :
rJMFF037H05+ GCTTAACGACAGATAATGCTGCTGCAGTTAGGAAAGAAATCGCGACGCTTTGCAGTGAAC
rJMFF040O02+ GCTTAACGACAGATAATGCTGCTGCAGTTAGGAAAGAAATCGCGACGCTTTGCAGTGAAC
rJMFF046C04+ GCTTAACGACAGATAATGCTGCTGCAGTTAGGAAAGAAATCGCGACGCTTTGCAGTGAAC
rJMSF020A10+ GCTTAACGACAGATAATGCTGCTGCAGTTAGGAAAGAAATCGCGACGCTTTGCAGTGAAC
____________________________________________________________
consensus GCTTAACGACAGATAATGCTGCTGCAGTTAGGAAAGAAATCGCGACGCTTTGCAGTGAAC
. : . : . : . : . : . :
rJMFF037H05+ TAAGACCTCATGCTCTCGCCTTGGTCACTTCCTTTGGCATACCCGATGCTTTCTTGAGCC
rJMFF040O02+ TAAGACCTCATGCTCTCGCCTTGGTCACTTCCTTTGGCATACCCGATGCTTTCTTGAGCC
rJMFF046C04+ TAAGACCTCATGCTCTCGCCTTGGTCACTTCCTTTGGCATACCCGATGCTTTCTTGAGCC
rJMSF020A10+ TAAGACCTCATGCTCTCGCCTTGGTCACTTCCTTTGGCATACCCGATACTTTCTTGAGCC
____________________________________________________________
consensus TAAGACCTCATGCTCTCGCCTTGGTCACTTCCTTTGGCATACCCGATGCTTTCTTGAGCC
. : . : . : . : . : . :
rJMFF037H05+ CCATCGCTTTCAATTGGAT
rJMFF040O02+ CCATCGCTTTCAATTGGATCGACTCAAACGCCTGGTCTTCCCTTTAGGATA
rJMFF046C04+ CCATCGCTTTCAATTGGATCGACTCAAACGCCTGGTCTTCCCTTTAGGATA
rJMSF020A10+ CCATCGCTTTCAATTGGATCGACTCAAACGCCTGGTCTTCCCTTTAGGATAACCTTTGTT
____________________________________________________________
consensus CCATCGCTTTCAATTGGATCGACTCAAACGCCTGGTCTTCCCTTTAGGATAACCTTTGTT
. : . : . : . : . : . :
rJMSF020A10+ AATGTCTATGATGTTTTTTGGTCATAAATATATGTATAAGATTCCAACTACAAAGTACAT
____________________________________________________________
consensus AATGTCTATGATGTTTTTTGGTCATAAATATATGTATAAGATTCCAACTACAAAGTACAT