Contig 012588:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF019C24Sequence215015728ref|XP_011088707.1|9e-19PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Sesamum indi737012588 (2)gb|KDO40612.1|9e-46hypothetical protein CISIN_1g033648mg [Citrus sinensis]
JMSF042I15Sequence745003247 (13)ref|XP_004249359.1|1e-66PREDICTED: UBP1-associated protein 2A-like [Solanum lycopersicum]686012588 (2)gb|KDO40612.1|3e-41hypothetical protein CISIN_1g033648mg [Citrus sinensis]

Alignment

This contig is upended


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rJMSF019C24+                                                    GGGAAATTGGTTCCTGAA
                      ____________________________________________________________
consensus                                                       GGGAAATTGGTTCCTGAA
 
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rJMSF042I15+                               TTCAAGAATTATTCTGCTGGAAATCCTTCTCGTGTGTTG
rJMSF019C24+          GAAATTTTGTCACTTCCGGTGTTCAAGAATTATTCTGCTGGAAATCCTTCTCGTGTGTTG
                      ____________________________________________________________
consensus             GAAATTTTGTCACTTCCGGTGTTCAAGAATTATTCTGCTGGAAATCCTTCTCGTGTGTTG
 
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rJMSF042I15+          TACATCAAAAACTTGGCTAGAGATGTGATTGCTGATGATTTCTATNTCATATTTGGATCN
rJMSF019C24+          TACATCAAAAACTTGGCTAGAGATGTGATTGCTGATGATTTCTATTTCATATTTGGATCC
                      ____________________________________________________________
consensus             TACATCAAAAACTTGGCTAGAGATGTGATTGCTGATGATTTCTATTTCATATTTGGATCC
 
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rJMSF042I15+          TTCTTTGGAAGTATTGATACTGCTAGATCCAGTCTCACTGTGAAGTTAATGCAGGAAGGA
rJMSF019C24+          TTCTTTGGAAGTATTGATACTGCTAGATCCAGTCTCACTGTGAAGTTAATGCAGGAAGGA
                      ____________________________________________________________
consensus             TTCTTTGGAAGTATTGATACTGCTAGATCCAGTCTCACTGTGAAGTTAATGCAGGAAGGA
 
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rJMSF042I15+          AGAATGCGGGGTCAAGCTTTTATTACATTTCCATCAGTTGAGCTTGCTCAGAATGCTTTG
rJMSF019C24+          AGAATGCGGGGTCAAGCTTTTATTACATTTCCATCAGTTGAGCTTGCTCAGAATGCTTTG
                      ____________________________________________________________
consensus             AGAATGCGGGGTCAAGCTTTTATTACATTTCCATCAGTTGAGCTTGCTCAGAATGCTTTG
 
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rJMSF042I15+          AACCTGGTGAATGGATACGTGTTTAAAGGCAAGCCCATTTTCATTCAGTTTGGCCGTAAT
rJMSF019C24+          AACCTGGTGAATGGATACGTGTTTAAAGGCAAGCCCATTGTCATTCAGTTTGGCCGTAAT
                      ____________________________________________________________
consensus             AACCTGGTGAATGGATACGTGTTTAAAGGCAAGCCCATTTTCATTCAGTTTGGCCGTAAT
 
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rJMSF042I15+          CCTGCTACCGCAACTAGCTAATTAGAATTGCAGACTGTTCGCTATTTTCCTCTAAAAGAA
rJMSF019C24+          CCTGCTACCGCAACTAGCTAATTAGAATTGCAGACTGTTCGCTATTTTCCTCTAAAAGAA
                      ____________________________________________________________
consensus             CCTGCTACCGCAACTAGCTAATTAGAATTGCAGACTGTTCGCTATTTTCCTCTAAAAGAA
 
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rJMSF042I15+          GCTCACTGAAATTTAGAGCATTGCCTTCAAGACTTCAATGCCAGTTGAATGAAGATTTCC
rJMSF019C24+          GCTCACTGAAATTTAGAGCATTGCCTTCAAGACTTCAATGCCAGTTGAATGAAGATTTCC
                      ____________________________________________________________
consensus             GCTCACTGAAATTTAGAGCATTGCCTTCAAGACTTCAATGCCAGTTGAATGAAGATTTCC
 
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rJMSF042I15+          GGCGTTTGTGGGGGAGATTCCAGCGAGCTTCTGGCCAAATGATGAAGACACGCGAATACG
rJMSF019C24+          GGCGTTTGTGGGGGAGATTCCAGCGAGCTTCTGGCCAAATGATGAAGACACGCGAATACG
                      ____________________________________________________________
consensus             GGCGTTTGTGGGGGAGATTCCAGCGAGCTTCTGGCCAAATGATGAAGACACGCGAATACG
 
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rJMSF042I15+          TTGCAGAGATGATGACAAATACTAGAGTCCGCCATGTCCGATAAAAGAAGCTTCATGCCG
rJMSF019C24+          TTGCAGAGATGATGACAAATACTAGAGTCCGCCATGTCCGATAAAAGAAGCTTCATGCCG
                      ____________________________________________________________
consensus             TTGCAGAGATGATGACAAATACTAGAGTCCGCCATGTCCGATAAAAGAAGCTTCATGCCG
 
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rJMSF042I15+          ACAAGCGGTTTCTGCCTTTTAAACAAACACACCTTGCACATTTTATGTATAACCT--TTC
rJMSF019C24+          ACAAGCGGTTTCTGCCTTTTAAACAAACACACCTTGCACATTTTATGTATAACCTTGTTC
                      ____________________________________________________________
consensus             ACAAGCGGTTTCTGCCTTTTAAACAAACACACCTTGCACATTTTATGTATAACCTTGTTC
 
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rJMSF042I15+          ATAGATTATGGTCCAGTGTTTTGTGTTTGGATTGGGGAGAAACATTTTGACAGATTTAGT
rJMSF019C24+          ATAGATTATGGTCCAGTGTTTTGTGTTTGGATTGGGGAGAAACATTTTGACAGATTTAGT
                      ____________________________________________________________
consensus             ATAGATTATGGTCCAGTGTTTTGTGTTTGGATTGGGGAGAAACATTTTGACAGATTTAGT
 
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rJMSF042I15+          ACATTATTATCATGTCTTCATGCCGTATGTAAAAATATGTTAATTTCTG           
rJMSF019C24+          ACATTATTATCATGTC-TCATGCCGTATGTAAAAATATGTTAATTTCTGGTGAATTAATT
                      ____________________________________________________________
consensus             ACATTATTATCATGTCTTCATGCCGTATGTAAAAATATGTTAATTTCTGGTGAATTAATT