Contig 012587:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP020H09Sequence241012587 (4)gb|AAB07724.1|2e-04Pn47p [Ipomoea nil]
JMSF001C17Sequence192013329 (2)gb|AAB07724.1|2e-12Pn47p [Ipomoea nil]744012587 (4)gb|AAB07724.1|3e-77Pn47p [Ipomoea nil]
JMSF018O12Sequence307013329 (2)gb|AAB07724.1|2e-15Pn47p [Ipomoea nil]655012587 (4)gb|AAB07724.1|5e-49Pn47p [Ipomoea nil]
JMSF035A20Sequence686012587 (4)gb|AAB07724.1|2e-60Pn47p [Ipomoea nil]

Alignment

This contig is upended


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rJMSF001C17+                                             GGGCGAGGAACTCAGCATAACCGTG
                      ____________________________________________________________
consensus                                                GGGCGAGGAACTCAGCATAACCGTG
 
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rJMSF001C17+          ACAGGGCACAGCTTGGGTTCTTCCATGGCAACACTGAATGCAACAGACATGGCTGTCAAC
                      ____________________________________________________________
consensus             ACAGGGCACAGCTTGGGTTCTTCCATGGCAACACTGAATGCAACAGACATGGCTGTCAAC
 
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rJMSF001C17+          CCATTCAGACCGGACATTCCTGTCACTGCTTTCTTGTATGCAAGTCCCAAAGTAGGGGAC
rJMSF035A20+           CATTCAGACCGGACATTCCTGTCACTGCTTTCTNGTATGCAAGTCCCAAAGTAGGGGAC
                      ____________________________________________________________
consensus             CCATTCAGACCGGACATTCCTGTCACTGCTTTCTTGTATGCAAGTCCCAAAGTAGGGGAC
 
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rJMSF001C17+          CTGAATTTTAAGAATGCTTTTGCTAACCAACCAAATCTCAGAGGCCTGCGAATCACTGAC
rJMSF035A20+          CTGAATTTTAAGAATGCTCTTGCTAACCAACCAAATCTCAGAGGCCTGCGAATCACTGAC
rJMSF018O12+               TTTTAAGAATGCTTTTGCTAACCAACCAAATCTCAGAGGCCTGCGAATCACTGAC
                      ____________________________________________________________
consensus             CTGAATTTTAAGAATGCTTTTGCTAACCAACCAAATCTCAGAGGCCTGCGAATCACTGAC
 
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rJMSF001C17+          GTCAACGACGTTGTTACCAAAATTCCGCCATTTGGATGGCCACTTGGTGCTCAAATATTG
rJMSF035A20+          GTCAACGACGTTGTTACCAAAATTCCGCCATTTGGATGGCCACTTGGTGCTCAAATATTG
rJMSF018O12+          GTCAACGACGTTGTTACCAAAATTCCGCCATTNGGATGGCCACTTGGTGCTCAAATATTG
                      ____________________________________________________________
consensus             GTCAACGACGTTGTTACCAAAATTCCGCCATTTGGATGGCCACTTGGTGCTCAAATATTG
 
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rJMSF001C17+          CCAATCATATATTACCAAGATGTGGGAGAGGGTTTAATAATTGAATCCAAAAGATCTGAG
rJMSF035A20+          CCAATCATATATTACCAAGATGTGGGAGAGGGTTTAATAATTGAATCCAAAAGATCTGAG
rJMSF018O12+          CCAATCATATATTACCAAGATGTGGGAGAGGGTTTAATAATTGAATCCAAAAGATCTGAG
                      ____________________________________________________________
consensus             CCAATCATATATTACCAAGATGTGGGAGAGGGTTTAATAATTGAATCCAAAAGATCTGAG
 
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rJMSF001C17+          TATTTGAAGCCTGAACTCTCCTCGGCTCTTGGCTATCACGATTTGGTGCTTTATATGCAT
rJMSF035A20+          TATTTGAAGCCTGAACTCTCCTCGGCTCTTGGCTATCACGATTTGGTGCTTTATATGCAT
rJMSF018O12+          TATTTGAAGCCTGAACTCTCCTCGGCTCTTGGCTATCACGATTTGGTGCTTTATATGCAT
                      ____________________________________________________________
consensus             TATTTGAAGCCTGAACTCTCCTCGGCTCTTGGCTATCACGATTTGGTGCTTTATATGCAT
 
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rJMSF001C17+          GCAATTGATGGGTTCGAAGGGCCTCAAGGAGGGATCTTGCCTCGCGGATTCTTTGATCTT
rJMSF035A20+          GCAATTGATGGGTTCGAAGGGCCTCAAGGAGGGATCTTGCCTCGCGGATTCTTTGATCTT
rJMSF018O12+          GCAATTGATGGGTTCGAAGGGCCTCAAGGAGGGATCTTGCCTCGCGGATTCTTTGATCTT
                      ____________________________________________________________
consensus             GCAATTGATGGGTTCGAAGGGCCTCAAGGAGGGATCTTGCCTCGCGGATTCTTTGATCTT
 
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rJMSF001C17+          GCCAAAATTAACAAGTATCAGGATGCTTTGAAAGACGAATTTAGTATCCCAGTGGCCTGG
rJMCP020H09-                                                                   TGG
rJMSF035A20+          GCCAAAATTAACAAGTATCAGGATGCTTTGAAAGACGAATTTAGTATCCCAGTGGCCTGG
rJMSF018O12+          GCCAAAATTAACAAGTATCAGGATGCTTTGAAAGACGAATTTAGTATCCCAGTGGCCTGG
                      ____________________________________________________________
consensus             GCCAAAATTAACAAGTATCAGGATGCTTTGAAAGACGAATTTAGTATCCCAGTGGCCTGG
 
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rJMSF001C17+          TTGACCGTAAAAGATAAAGGAATGGTTCAGAAAGAGGACGGGAGTTATATTCTTGATGAT
rJMCP020H09-          TTGACCGTAAAAGATAAAGGAATGGTTCAGAAAGAGGACGGGAGTTATATTCTTGATGAT
rJMSF035A20+          TTGACCGTAAAAGATAAAGGAATGGTTCAGAAAGAGGACGGGAGTTATATTCTTGATGAT
rJMSF018O12+          TTGACCGTAAAAGATAGAGGAATGGTTCAGAAAGAGGACGGGAGTTATATTCTTGATGAT
                      ____________________________________________________________
consensus             TTGACCGTAAAAGATAAAGGAATGGTTCAGAAAGAGGACGGGAGTTATATTCTTGATGAT
 
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rJMSF001C17+          CACGAAGTGGATGACGGCTTTTAAACTAAAACCAATTCATTTGGTTGAATAAAGCTAAGT
rJMCP020H09-          CACGAAGTGGATGACGGCTTTTAAACTAAAACCAATTCATTTGGTTGAATAAAGCTAAGT
rJMSF035A20+          CACGAAGTGGATGACGGCTTTTAAACTAAAACCAATTCATTTGGTTGAATAAAGCTAAGT
rJMSF018O12+          CACGAAGTGGATGACGGCTTTTAAACTAAAACCAATTCATTTGGTTGAATAAAGCTAAGT
                      ____________________________________________________________
consensus             CACGAAGTGGATGACGGCTTTTAAACTAAAACCAATTCATTTGGTTGAATAAAGCTAAGT
 
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rJMSF001C17+          CTCCTATGAAGTTTCTACTTATTTATCAGTGTGCTTTGAATAAGACTACCGGAGGCAACT
rJMCP020H09-          CTCCTATGAAGTTTCTACTTATTTATCAGTGTGCTTTGAATAAGACTACCGGAGGCAACT
rJMSF035A20+          CTCCTATGAAGTTTCTACTTATTTATCAGTGTGCTTTGAATAAGACTACCGGAGGCAACT
rJMSF018O12+          CTCCTATGAAGTTTCTACTTATTTATCAGTGTGCTTTGAATAAGACTACCGGAGGCAACT
                      ____________________________________________________________
consensus             CTCCTATGAAGTTTCTACTTATTTATCAGTGTGCTTTGAATAAGACTACCGGAGGCAACT
 
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rJMSF001C17+          AGCTAGCAGTGTGGCTGAATGCATATGTATGTTTGTTGTTTGCTTGCTTGTTTGTT    
rJMCP020H09-          AGCTAGCAGTGTGGCTGttTGCATATGTATGTTTGTTGaaTGCgTGCTTGTTTGTT    
rJMSF035A20+          AGCTAGCAGTGTGGCTGAATGCATATGTATGTTTGTTGTTTGCTTGCTTGTTTGTTTGTT
rJMSF018O12+          AGCTAGCAGTGTGGCTGAATGCATATGTANGTTTGTNGTTTGCTTGCTTGTTTGTTTGNT
                      ____________________________________________________________
consensus             AGCTAGCAGTGTGGCTGAATGCATATGTATGTTTGTTGTTTGCTTGCTTGTTTGTTTGTT
 
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rJMSF035A20+          TTTGAATAATGTGTTAAGGGAAAAT                                   
rJMSF018O12+          NTTGAATAATGTGTTAAGGGAAAATTGCAGTCTTATTCCATAATTCATATGAAAAATTGT
                      ____________________________________________________________
consensus             TTTGAATAATGTGTTAAGGGAAAATTGCAGTCTTATTCCATAATTCATATGAAAAATTGT