Contig 012584:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF018J11Sequence515013550 (2)ref|XP_002300673.2|1e-35hypothetical protein POPTR_0002s01580g [Populus trichocarpa] gb|EEE79946.2| hypo756012584 (2)
JMSF048N18Sequence698013550 (2)ref|XP_002510619.1|1e-81pseudouridylate synthase, putative [Ricinus communis] gb|EEF52806.1| pseudouridy759012584 (2)ref|XP_002510619.1|7e-19pseudouridylate synthase, putative [Ricinus communis] gb|EEF52806.1| pseudouridy

Alignment

This contig is upended


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rJMSF048N18+                                                                 ATAGC
                      ____________________________________________________________
consensus                                                                    ATAGC
 
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rJMSF048N18+          AGAGGATTTCAAAATGAAGTATATATATTTTCATATTGCATCANCAGAGCACAAGGAAGG
                      ____________________________________________________________
consensus             AGAGGATTTCAAAATGAAGTATATATATTTTCATATTGCATCANCAGAGCACAAGGAAGG
 
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rJMSF048N18+          AGTCATGGGTCTATGGCTACATTCTCTGAATTACCGTAATTACCCTGATCTACGTTTTTC
rJMSF018J11+                                  TCTGAATTACCGTAATTACCCTGATCTACGTTTTTC
                      ____________________________________________________________
consensus             AGTCATGGGTCTATGGCTACATTCTCTGAATTACCGTAATTACCCTGATCTACGTTTTTC
 
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rJMSF048N18+          AAACTGTGATGAAACTACAGATGCAAAAAGCATACCTGATTCTCGCACTGTCAACAATGG
rJMSF018J11+          AAACTGTGATGAAACTACAGATGCAAAAAGCATACCTGATTCTCGCACTGTCAACAATGG
                      ____________________________________________________________
consensus             AAACTGTGATGAAACTACAGATGCAAAAAGCATACCTGATTCTCGCACTGTCAACAATGG
 
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rJMSF048N18+          TGAGGCTCTGGATGCAGAAACTGTGGAATCTGCAAGTGCCAAAACAATTGAAACTGTGAA
rJMSF018J11+          TGAGGCTCTGGATGCAGAAACTGTGGAATCTGCAAGTGCCAAAACAATTGAAACTGTGAA
                      ____________________________________________________________
consensus             TGAGGCTCTGGATGCAGAAACTGTGGAATCTGCAAGTGCCAAAACAATTGAAACTGTGAA
 
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rJMSF048N18+          GAACGATGAATCTACAATTGCCAAAACTACTGAAAGTAATGACATGGATCCATCGTGTGC
rJMSF018J11+          GAACGATGAATCTACAATTGCCAAAACTACTGAAAGTAATGACATGGATCCATCGTGTGC
                      ____________________________________________________________
consensus             GAACGATGAATCTACAATTGCCAAAACTACTGAAAGTAATGACATGGATCCATCGTGTGC
 
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rJMSF048N18+          CATGAGTGAAGCTGATGCAAAAACTGTCGAAGCTGCAGACAATGCTGATTCATGTCCTGG
rJMSF018J11+          CATGAGTGAAGCTGATGCAAAAACTGTCGAAGCTGCAGACAATGCTGATTCATGTCCTGG
                      ____________________________________________________________
consensus             CATGAGTGAAGCTGATGCAAAAACTGTCGAAGCTGCAGACAATGCTGATTCATGTCCTGG
 
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rJMSF048N18+          GAAGAACGACAAATCTGCAAGTACCAAAACTACTGAGGTTGATGCTCTGGATGCAAAAAC
rJMSF018J11+          GAAGAACGACAAATCTGCAAGTACCAAAACTACTGAGGTTGATGCTCTGGATGCAAAAAC
                      ____________________________________________________________
consensus             GAAGAACGACAAATCTGCAAGTACCAAAACTACTGAGGTTGATGCTCTGGATGCAAAAAC
 
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rJMSF048N18+          TGTCGAAGATGCAGGCAATGCTGATTCGTGCCCTGGGAAGAACGACGAAACTGCAACTGC
rJMSF018J11+          TGTCGAAGATGCAGGCAATGCTGATTCGTGCCCTGGGAAGAACGACGAAACTGCAACTGC
                      ____________________________________________________________
consensus             TGTCGAAGATGCAGGCAATGCTGATTCGTGCCCTGGGAAGAACGACGAAACTGCAACTGC
 
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rJMSF048N18+          CCTTTGAGGTTGATGCTCCGGATGCAAAAACTGTGGAAGCTGCAGAGAATACTGATTCGT
rJMSF018J11+          CCTTTGAGGTTGATGCTCCGGATGCAAAAACTGTGGAAGCTGCAGAGAATACTGATTCGT
                      ____________________________________________________________
consensus             CCTTTGAGGTTGATGCTCCGGATGCAAAAACTGTGGAAGCTGCAGAGAATACTGATTCGT
 
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rJMSF048N18+          GTCCTGGGAAGAACGACGAATCTGCAAGTGCCAAAACCTACTTAAAGTAATGACATGACA
rJMSF018J11+          GTCCTGGGAAGAACGACGAATCTGCAAGTGCCAAAACCTACTTAAAGTAATGACATGACA
                      ____________________________________________________________
consensus             GTCCTGGGAAGAACGACGAATCTGCAAGTGCCAAAACCTACTTAAAGTAATGACATGACA
 
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rJMSF048N18+          TATGTGAAAAGTGTTGCAGTTGAGGGCATGGCTGAGTGAGAAGACTGAAGACATATGCCT
rJMSF018J11+          TATGTGAAAAGTGTTGCAGTTGAGGGCATGGCTGAGTGAGAAGACTGAAGACATATGCCT
                      ____________________________________________________________
consensus             TATGTGAAAAGTGTTGCAGTTGAGGGCATGGCTGAGTGAGAAGACTGAAGACATATGCCT
 
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rJMSF048N18+          CAAAATTTTCCATTTGATTTGATAGTTCTTAGTATTTTGCTTCTTGAAGATTTGCATGTG
rJMSF018J11+          CAAAATTTTCCATTTGATTTGATAGTTCTTAGTATTTTGCTTCTTGAAGATTTGCATGTG
                      ____________________________________________________________
consensus             CAAAATTTTCCATTTGATTTGATAGTTCTTAGTATTTTGCTTCTTGAAGATTTGCATGTG
 
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rJMSF048N18+          AAGCAAACTTAGATATAACTTTCTTTGATAGAAC                          
rJMSF018J11+          AAGCAAACTTAGATATAACTTTCTTTGATAGAACTCATAGAAGTGAAGAAGAGATTTCAG
                      ____________________________________________________________
consensus             AAGCAAACTTAGATATAACTTTCTTTGATAGAACTCATAGAAGTGAAGAAGAGATTTCAG
 
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rJMSF018J11+          TGATGGGTATTTTTTGTTTTTAATTTCTGTGTTTTGATTTGGATAAAGTTTTAATTTTTT
                      ____________________________________________________________
consensus             TGATGGGTATTTTTTGTTTTTAATTTCTGTGTTTTGATTTGGATAAAGTTTTAATTTTTT