Contig 012579:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMCP020A01-                                                    CACCACCGCGAGCAGCAG
                      ____________________________________________________________
consensus                                                       CACCACCGCGAGCAGCAG
 
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rJMCP020A01-          AAGTAGCAGCACGAGAAGCCACCAGTCATCTAGCAGCGCCGCCTCCTCATCCACTACCAC
                      ____________________________________________________________
consensus             AAGTAGCAGCACGAGAAGCCACCAGTCATCTAGCAGCGCCGCCTCCTCATCCACTACCAC
 
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rJMCP020A01-          CACACACCGTAAAATCCGGAACCAGTTCCAATACTCTCAGCCCAGCCCGACGCCGCAGCT
rJMSF009J22+                     AAATCCGGAACCAGTTCCAATACTTTCAGCCCAGCCNGACGCCGCAGCT
rJMSF017I05+                                                          GACGCCGCAGNT
                      ____________________________________________________________
consensus             CACACACCGTAAAATCCGGAACCAGTTCCAATACTTTCAGCCCAGCCCGACGCCGCAGCT
 
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rJMCP020A01-          TCGATagaggttccCaCCACACGCCAATAACTACGCCCGCAATAATTCCACCCTCTGGAG
rJMSF009J22+          TCGATTCTCCAAGGCTCCACACGCCAATAACTACGCCCGCAATAATTCCACCCTCTGGAG
rJMSF017I05+          TCGATTNTCCAAGGCTCCACACGCCAATAACTACGCCCGCAATAATTCCACCCTCTGGAG
                      ____________________________________________________________
consensus             TCGATTCTCCAAGGCTCCACACGCCAATAACTACGCCCGCAATAATTCCACCCTCTGGAG
 
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rJMCP020A01-          CCTCTTCCGCG                                                 
rJMSF009J22+          CCTCTTCCGCGTCGGCCTCGTTACAATGCCGGAAATCGGATCCCACAGTTTCAGAGCTCA
rJMSF017I05+          CCTCTTCCGCGTCGGCCTCGTTACAATGCCGGAAATCGGATCCCACAGTTTCAGAGCTCA
                      ____________________________________________________________
consensus             CCTCTTCCGCGTCGGCCTCGTTACAATGCCGGAAATCGGATCCCACAGTTTCAGAGCTCA
 
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rJMSF009J22+          GAACAGAGACGACAACAACAACAACAACAACAATCGTAACAACATTGTCCGTAGCGGCAG
rJMSF017I05+          GAACAGAGACGACAACAACAACAACAACAACAATCGTAACAACATTGTCCGTAGCGGCAG
                      ____________________________________________________________
consensus             GAACAGAGACGACAACAACAACAACAACAACAATCGTAACAACATTGTCCGTAGCGGCAG
 
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rJMSF009J22+          CAGCAGCAGCAGCATTGTAAGCAACTCCGACACCAAACCCAACATTACCCAGAAGCTGAA
rJMSF017I05+          CAGCAGCAGCAGCATTGTAAGCAACTCCGACACCAAACCCAACATTACCCAGAAGCTGAA
                      ____________________________________________________________
consensus             CAGCAGCAGCAGCATTGTAAGCAACTCCGACACCAAACCCAACATTACCCAGAAGCTGAA
 
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rJMSF009J22+          GCAGAGATTTTCATTTTCAGACAAAAACCTCGTCTTTTTCGACACCTGCAAGTGCTCTTC
rJMSF017I05+          GCAGAGATTTTCATTTTCAGACAAAAACCTCGTCTTTTTCGACACCTGCAAGTGCTCTTC
                      ____________________________________________________________
consensus             GCAGAGATTTTCATTTTCAGACAAAAACCTCGTCTTTTTCGACACCTGCAAGTGCTCTTC
 
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rJMSF009J22+          CAATTCCGTCCAAACAATCCCTTCAGCACCCGCCAAGAACCAAGACCAGAAGAAAAACAA
rJMSF017I05+          CAATTCCGTCCAAACAATCCCTTCAGCACCCGCCAAGAACCAAGACCAGAAGAAAAACAA
                      ____________________________________________________________
consensus             CAATTCCGTCCAAACAATCCCTTCAGCACCCGCCAAGAACCAAGACCAGAAGAAAAACAA
 
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rJMSF009J22+          GGAACCCGTAGCTCAATCGGTTCCTGGGTGGCAGATTATCCGCAAGAAAAACACAAAACA
rJMSF017I05+          GGAACCCGTAGCTCAATCGGTTCCTGGGTGGCAGATTATCCGCAAGAAAAACACAAAACA
                      ____________________________________________________________
consensus             GGAACCCGTAGCTCAATCGGTTCCTGGGTGGCAGATTATCCGCAAGAAAAACACAAAACA
 
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rJMSF009J22+          ACAACCAACAACAACAGGGAAGCAAACCATGTCACGTATCCGAACGTTTGAATGGTTAAA
rJMSF017I05+          ACAACCAACAACAACAGGGAAGCAAACCATGTCACGTATCCGAACGTTTGAATGGTTAAA
                      ____________________________________________________________
consensus             ACAACCAACAACAACAGGGAAGCAAACCATGTCACGTATCCGAACGTTTGAATGGTTAAA
 
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rJMSF009J22+          ACAGCTTTCTCTAGAAGCTGAAGGTGCCGCCACAACCGTACCACTGAATAATTAAAACAG
rJMSF017I05+          ACAGCTTTCTCTAGAAGCTGAAGGTGCCGCCACAACCGTACCACTGAATAATTAAAACAG
                      ____________________________________________________________
consensus             ACAGCTTTCTCTAGAAGCTGAAGGTGCCGCCACAACCGTACCACTGAATAATTAAAACAG
 
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rJMSF009J22+          CTTAATCATGCTTATGATTGTTGGATGCCTTAACTCCTTGGCTGTATTGTGTTCTGATTG
rJMSF017I05+          CTTAATCATGCTTATGATTGTTGGATGCCTTAACTCCTTGGCTGTATTGTGTTCTGATTG
                      ____________________________________________________________
consensus             CTTAATCATGCTTATGATTGTTGGATGCCTTAACTCCTTGGCTGTATTGTGTTCTGATTG
 
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rJMSF009J22+          TTTTTAATTTCTTCTTTGTTCTCTATAGAAGCTAGATTGATTAATGGAGTAATTAATCAC
rJMSF017I05+          TTTTTAATTTCTTCTTTGTTCTCTATAGAAGCTAGATTGATTAATGGAGTAATTAATCAC
                      ____________________________________________________________
consensus             TTTTTAATTTCTTCTTTGTTCTCTATAGAAGCTAGATTGATTAATGGAGTAATTAATCAC
 
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rJMSF009J22+          TGCTAAAATGAAGACTGATGTAATGACTTAATTGCGTAGCACCTATG             
rJMSF017I05+          TGCTAAAATGAAGACTGATGTAATGACTTAATTGCGTAGCACCTATGTTCCCTGTAGCTG
                      ____________________________________________________________
consensus             TGCTAAAATGAAGACTGATGTAATGACTTAATTGCGTAGCACCTATGTTCCCTGTAGCTG