clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF015O18 | Sequence | 251 | 000868 (5) | ref|XP_009772873.1| | 1e-04 | PREDICTED: cell wall protein RBR3 isoform X2 [Nicotiana sylvestris] | 751 | 012566 (3) | ref|XP_009594511.1| | 3e-75 | PREDICTED: cell wall protein RBR3 isoform X1 [Nicotiana tomentosiformis] |
JMSF044G21 | Sequence | 790 | 000868 (5) | ref|XP_006353835.1| | 3e-47 | PREDICTED: putative GPI-anchored protein PB15E9.01c-like [Solanum tuberosum] | 732 | 012566 (3) | ref|XP_009594511.1| | 1e-75 | PREDICTED: cell wall protein RBR3 isoform X1 [Nicotiana tomentosiformis] |
JMSF051G18 | Sequence | 714 | 000868 (5) | ref|XP_006353835.1| | 3e-36 | PREDICTED: putative GPI-anchored protein PB15E9.01c-like [Solanum tuberosum] | 709 | 012566 (3) | ref|XP_009594520.1| | 3e-74 | PREDICTED: sialidase isoform X2 [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
rJMSF051G18+ AGGCGGCAACCATCACCTG
rJMSF044G21+ GAACTTTGCCTAGGCGGCAACCATCACCTG
rJMSF015O18+ GGAACTTNGCCTAGGCGGCAACCATCACCTG
____________________________________________________________
consensus GGAACTTTGCCTAGGCGGCAACCATCACCTG
. : . : . : . : . : . :
rJMSF051G18+ TTGTTAGCAGGGGAAGACTCACAGAATCCTCTGNTAGTGGGCGGGGGCTTTCAAACGGGC
rJMSF044G21+ TTGTTAGCAGGGGAAGACTCACAGAATCCTCTGCTAGTGGGCGGGGGCTTTCAAACGGGC
rJMSF015O18+ TTGTTAGCAGGGGAAGACTCACAGAATCCTCTGCTAGTGGGCGGGGGCTTTCAAACGGGC
____________________________________________________________
consensus TTGTTAGCAGGGGAAGACTCACAGAATCCTCTGCTAGTGGGCGGGGGCTTTCAAACGGGC
. : . : . : . : . : . :
rJMSF051G18+ ATGTGGNTGATACACTTGATTCTCGCAGAGCTTCATTTCCCTTGGAGTTGACTACAAGGA
rJMSF044G21+ ATGTGGCTGATACACTTGATTCTCGCAGAGCTTCATTTCCCTTGGAGTTGACTACAAGGA
rJMSF015O18+ ATGTGGCTGATACACTTGATTCTCGCAGAGCTTCATTTCCCTTGGAGTTGACTACAAGGA
____________________________________________________________
consensus ATGTGGCTGATACACTTGATTCTCGCAGAGCTTCATTTCCCTTGGAGTTGACTACAAGGA
. : . : . : . : . : . :
rJMSF051G18+ AATCTATAAAGACACCTACAGAAAACATGGGATTTGGGAGGAATATCTCAAAGAAATCTC
rJMSF044G21+ AATCTATAAAGACACCTACAGAAAACATGGGATTTGGGAGGAATATCTCAAAGAAATCTC
rJMSF015O18+ AATCTATAAAGACACCTACAGAAAACATGGGATTTGGGAGGAATATCTCAAAGAAATCTC
____________________________________________________________
consensus AATCTATAAAGACACCTACAGAAAACATGGGATTTGGGAGGAATATCTCAAAGAAATCTC
. : . : . : . : . : . :
rJMSF051G18+ TTGATATGGCTATCAAACACATGGATATAAGAAATGGCCCTAATGGTGCTCGCCCACTTT
rJMSF044G21+ TTGATATGGCTATCAAACACATGGATATAAGAAATGGCCCTAATGGTGCTCGCCCACTTT
rJMSF015O18+ TTGATATGGCTATCAAACACATGGATATAAGAAATGGCCCTAATGGTGCTCGCCCACTTT
____________________________________________________________
consensus TTGATATGGCTATCAAACACATGGATATAAGAAATGGCCCTAATGGTGCTCGCCCACTTT
. : . : . : . : . : . :
rJMSF051G18+ CAGGCTCAATCCGTTACCCTCACAGCATTCGATCAAATGGTGTTAAAAGCCATAGTCACA
rJMSF044G21+ CAGGCTCAATCCGTTACCCTCACAGCATTCGATCAAATGGTGTTAAAAGCCATAGTCACA
rJMSF015O18+ CAGGCTCAATCCGTTACCCTCACAGCATTCGATCAAATGGTGTTAAAAGCCATAGTCACA
____________________________________________________________
consensus CAGGCTCAATCCGTTACCCTCACAGCATTCGATCAAATGGTGTTAAAAGCCATAGTCACA
. : . : . : . : . : . :
rJMSF051G18+ GTGCAAGTTCCCCAGCATCTCTGAATGGGAATATGAACTTCAGCAACAATGGCCCTACAT
rJMSF044G21+ GTGCAAGTTCCCCAGCATCTCTGAATGGGAATATGAACTTCAGCAACAATGGCCCTACAT
rJMSF015O18+ GTGCAAGTTCCCCAGCATCTCTGAATGGGAATATGAACTTCAGCAACAATGGCCCTACAT
____________________________________________________________
consensus GTGCAAGTTCCCCAGCATCTCTGAATGGGAATATGAACTTCAGCAACAATGGCCCTACAT
. : . : . : . : . : . :
rJMSF051G18+ CTGAAAATGGAAGTTATCTTAGTAGGTCTTCTGAAAATGGGAGTGAAGACGACAGATCTC
rJMSF044G21+ CTGAAAATGGAAGTTATCTTAGTAGGTCTTCTGAAAATGGGAGTGAAGACGACAGATCTC
rJMSF015O18+ CTGAAAATGGAAGTTATCTTAGTAGGTCTTCTGAAAATGGGAGTGAAGACGACAGATCTC
____________________________________________________________
consensus CTGAAAATGGAAGTTATCTTAGTAGGTCTTCTGAAAATGGGAGTGAAGACGACAGATCTC
. : . : . : . : . : . :
rJMSF051G18+ GATTCTCAGCAAGATTGACAGATACTGACATCTATGAGAGTTGTCGTTACGACATGATTC
rJMSF044G21+ GATTCTCAGCAAGATTGACAGATACTGACATCTATGAGAGTTGTCGTTACGACATGATTC
rJMSF015O18+ GATTCTCAGCAAGATTGACAGATACTGACATCTATGAGAGTTGTCGTTACGACATGATTC
____________________________________________________________
consensus GATTCTCAGCAAGATTGACAGATACTGACATCTATGAGAGTTGTCGTTACGACATGATTC
. : . : . : . : . : . :
rJMSF051G18+ TACTCAAAGAGGATGTCAAGAACACTAACTGGCTGCACAGCATTGACGATAAGCTTGATA
rJMSF044G21+ TACTCAAAGAGGATGTCAAGAACACTAACTGGCTGCACAGCATTGACGATAAGCTTGATA
rJMSF015O18+ TACTCAAAGAGGATGTCAAGAACACTAACTGGCTGCACAGCATTGACGATAAGCTTGATA
____________________________________________________________
consensus TACTCAAAGAGGATGTCAAGAACACTAACTGGCTGCACAGCATTGACGATAAGCTTGATA
. : . : . : . : . : . :
rJMSF051G18+ GTACCATTTTTGAGAACGGATTCGAACCTCTCCCTGAACCTTTCGACCATTTGTAACATA
rJMSF044G21+ GTACCATTTTTGAGAACGGATTCGAACCTCTCCCTGAACCTTTCGACCATTTGTAACATA
rJMSF015O18+ GTACCATTTTTGAGAACGGATTCGAACCTCTCCCTGAACCTTTCGACCATTTGTAACATA
____________________________________________________________
consensus GTACCATTTTTGAGAACGGATTCGAACCTCTCCCTGAACCTTTCGACCATTTGTAACATA
. : . : . : . : . : . :
rJMSF051G18+ AGTTCATTGGTGCTCCATGCATTATTTTTTATATTTATTNATCTATTTTTCAAATTTTGA
rJMSF044G21+ AGTTCATTGGTGCTCCATGCATTATTTTTTATATTTATTTATCTATTTTTCAAATTTTGA
rJMSF015O18+ AGTTCATTGGTGCTCCATGCATTATTTTTTATATTTATTTATCTATTTTTCAAATTTTGA
____________________________________________________________
consensus AGTTCATTGGTGCTCCATGCATTATTTTTTATATTTATTTATCTATTTTTCAAATTTTGA
. : . : . : . : . : . :
rJMSF051G18+ TTTGCTGCCTGAACACATAAA
rJMSF044G21+ TTTGCTGCCTGAACACATAAATGAAAATTAAATGTGT
rJMSF015O18+ TTTGCTGCCTGAACACATAAATGAAAATTAAATGTGTTAAGTTTGAAGCATATAGAATAT
____________________________________________________________
consensus TTTGCTGCCTGAACACATAAATGAAAATTAAATGTGTTAAGTTTGAAGCATATAGAATAT