| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF008L05 | Sequence | 401 | 003619 (8) | ref|XP_006304573.1| | 1e-36 | hypothetical protein CARUB_v10011593mg [Capsella rubella] gb|EOA37471.1| hypothe | 783 | 012565 (6) | ref|XP_009627799.1| | 2e-90 | PREDICTED: organic cation/carnitine transporter 3-like [Nicotiana tomentosiform |
| JMSF015E10 | Sequence | 262 | 003619 (8) | ref|XP_006416822.1| | 1e-22 | hypothetical protein EUTSA_v10007377mg [Eutrema salsugineum] gb|ESQ35175.1| hypo | 801 | 012565 (6) | ref|XP_009627799.1| | 2e-84 | PREDICTED: organic cation/carnitine transporter 3-like [Nicotiana tomentosiform |
| JMSF015M16 | Sequence | 472 | 003619 (8) | emb|CDX83951.1| | 2e-47 | BnaC08g16940D [Brassica napus] | 773 | 012565 (6) | ref|XP_009627799.1| | 2e-85 | PREDICTED: organic cation/carnitine transporter 3-like [Nicotiana tomentosiform |
| JMSF024B07 | Sequence | 659 | 003619 (8) | emb|CDX83951.1| | 3e-56 | BnaC08g16940D [Brassica napus] | 780 | 012565 (6) | ref|XP_009627799.1| | 2e-91 | PREDICTED: organic cation/carnitine transporter 3-like [Nicotiana tomentosiform |
| JMSF034N22 | Sequence | 628 | 003619 (8) | ref|XP_010260769.1| | 6e-75 | PREDICTED: organic cation/carnitine transporter 3-like [Nelumbo nucifera] | 653 | 012565 (6) | ref|XP_009627799.1| | 9e-82 | PREDICTED: organic cation/carnitine transporter 3-like [Nicotiana tomentosiform |
| JMSF035N22 | Sequence | 181 | 012565 (6) | ref|XP_009627799.1| | 7e-15 | PREDICTED: organic cation/carnitine transporter 3-like [Nicotiana tomentosiform | |||||
This contig is upended
. : . : . : . : . : . :
rJMSF024B07+ TAGACAATTCCGACCACGATCAAGA
rJMSF015E10+ ATTNTAGACAATTCCGACCACGATCAAGA
rJMSF008L05+ CCACGATCAAGA
____________________________________________________________
consensus ATTNTAGACAATTCCGACCACGATCAAGA
. : . : . : . : . : . :
rJMSF024B07+ CAGGGAGGGGATGGATTTATACGCGGCTCT-AAAGCTGCTGCTAAACAAAGGGTGGGCTT
rJMSF015E10+ CAGGGAGGGGATGGATTTATACGCGGCTCTNAAAGCTGCTGCTAAACAAAGGGTGGGCTT
rJMSF034N22+ T
rJMSF008L05+ CAGGGAGGGGATGGATTTATACGCGGCTCT-AAAGCTGCTGCTAAACAAAGGGTGGGCTT
rJMSF015M16+ GGGATGGATTTATACGCGGCTCTAAAAGCTGCTGCTAAACAAAGGGTGGGCTT
____________________________________________________________
consensus CAGGGAGGGGATGGATTTATACGCGGCTCTAAAAGCTGCTGCTAAACAAAGGGTGGGCTT
. : . : . : . : . : . :
rJMSF024B07+ TGCGGCGGCTGTTAACGGTGATGTTAGTCTCCGTCGGGACAGGGATAGTGTACTACGGAA
rJMSF015E10+ TGCGGCGGCTGTTAACGGTGATGTTAGTCTCCGTCGGGACAGGGATAGTGTACTACGGAA
rJMSF034N22+ TGCGGCGGCTGTTAACGGTGATGTTAGTCTCCGTCGGGACAGGGATAGTGTACTACGGAA
rJMSF008L05+ TGCGGCGGCTGTTAACGGTGATGTTAGTCTCCGTCGGGACAGGGATAGTGTACTACGGAA
rJMSF015M16+ TGCGGCGGCTGTTAACGGTGATGTTAGTCTCCGTCGGGACAGGGATAGTGTACTACGGAA
____________________________________________________________
consensus TGCGGCGGCTGTTAACGGTGATGTTAGTCTCCGTCGGGACAGGGATAGTGTACTACGGAA
. : . : . : . : . : . :
rJMSF024B07+ TCCCGTTGGGTGTCGGGGAAATGCCGTTGAATCTCTACCTCAGCACGACGTTAAACGCCT
rJMSF015E10+ TCCCGTTGGGTGTCGGGGAAATGCCGTTGAATCTCTACCTCAGCACGACGTTAAACGCCT
rJMSF034N22+ TCCCGTTGGGTGTCGGGGAAATGCCGTTGAATCTCTACCTCAGCACGACGTTAAACGCCT
rJMSF008L05+ TCCCGTTGGGTGTCGGGGAAATGCCGTTGAATCTCTACCTCAGCACGACGTTAAACGCCT
rJMSF015M16+ TCCCGTTGGGTGTCGGGGAAATGCCGTTGAATCTCTACCTCAGCACGACGTTAAACGCCT
____________________________________________________________
consensus TCCCGTTGGGTGTCGGGGAAATGCCGTTGAATCTCTACCTCAGCACGACGTTAAACGCCT
. : . : . : . : . : . :
rJMSF024B07+ TGGCGGAGCTGCCGGCGTCGCTGACGACGTTCTTGCTGATAGACAAGCTGAAGCGGCGGA
rJMSF015E10+ TGGCGGAGCTGCCGGCGTCGCTGACGACGTTCTTGCTGATAGACAAGCTGAAGCGGCGGA
rJMSF034N22+ TGGCGGAGCTGCCGGCGTCGCTGACGACGTTCTTGCTGATAGACAAGCTGAAGCGGCGGA
rJMSF008L05+ TGGCGGAGCTGCCGGCGTCGCTGACGACGTTCTTGCTGATAGACAAGCTGAAGCGGCGGA
rJMSF015M16+ TGGCGGAGCTGCCGGCGTCGCTGACGACGTTCTTGCTGATAGACAAGCTGAAGCGGCGGA
____________________________________________________________
consensus TGGCGGAGCTGCCGGCGTCGCTGACGACGTTCTTGCTGATAGACAAGCTGAAGCGGCGGA
. : . : . : . : . : . :
rJMSF024B07+ GCTCGGTGGTGGGGTTAGGGCTGCTGAGCGGCGCGTGTTGCGTTGGGTGCGCGGTGTTCG
rJMSF015E10+ GCTCGGTGGTGGGGTTAGGGCTGCTGAGCGGCGCGTGTTGCGTTGGGTGCGCGGTGTTCG
rJMSF034N22+ GCTCGGTGGTGGGGTTAGGGCTGCTGAGCGGCGCGTGTTGCGTTGGGTGCGCGGTGTTCG
rJMSF008L05+ GCTCGGTGGTGGGGTTAGGGCTGCTGAGCGGCGCGTGTTGCGTTGGGTGCGCGGTGTTCG
rJMSF015M16+ GCTCGGTGGTGGGGTTAGGGCTGCTGAGCGGCGCGTGTTGCGTTGGGTGCGCGGTGTTCG
____________________________________________________________
consensus GCTCGGTGGTGGGGTTAGGGCTGCTGAGCGGCGCGTGTTGCGTTGGGTGCGCGGTGTTCG
. : . : . : . : . : . :
rJMSF024B07+ TGAGCGAGGAGTTGAAGTGGGTCCAGATCGGGCTGGAAATCGTGGGGTTCTTCAACGCCT
rJMSF015E10+ TGAGCGAGGAGTTGAAGTGGGTCCAGATCGGGCTGGAAATCGTGGGGTTCTTCAACGCCT
rJMSF034N22+ TGAGCGAGGAGTTGAAGTGGGTCCAGATCGGGCTGGAAATCGTGGGGTTCTTCAACGCCT
rJMSF008L05+ TGAGCGAGGAGTTGAAGTGGGTCCAGATCGGGCTGGAAATCGTGGGGTTCTTCAACGCCT
rJMSF015M16+ TGAGCGAGGAGTTGAAGTGGGTCCAGATCGGGCTGGAAATCGTGGGGTTCTTCAACGCCT
____________________________________________________________
consensus TGAGCGAGGAGTTGAAGTGGGTCCAGATCGGGCTGGAAATCGTGGGGTTCTTCAACGCCT
. : . : . : . : . : . :
rJMSF024B07+ GCACGGCGTTCAACGTGCTCTTGATATACACGCTGGAGCTCTTCCCGACCTGCGTGAGGA
rJMSF015E10+ GCACGGCGTTCAACGTGCTCTTGATATACACGCTGGAGCTCTTCCCGACCTGCGTGAGGA
rJMSF034N22+ GCACGGCGTTCAACGTGCTCTTGATATACACGCTGGAGCTCTTCCCGACCTGCGTGAGGA
rJMSF035N22+ GGCGTTCAACGTGNTCTTGATANACACGCTGGAGCTCTTCCCGACNTGNGTGAGGA
rJMSF008L05+ GCACGGCGTTCAACGTGCTCTTGATATACACGCTGGAGCTCTTCCCGACCTGCGTGAGGA
rJMSF015M16+ GCACGGCGTTCAACGTGCTCTTGATATACACGCTGGAGCTCTTCCCGACCTGCGTGAGGA
____________________________________________________________
consensus GCACGGCGTTCAACGTGCTCTTGATATACACGCTGGAGCTCTTCCCGACCTGCGTGAGGA
. : . : . : . : . : . :
rJMSF024B07+ ACTCGGCGGTGTCGATAGTGAGGCAAGCCATGATGCTCGGCGGCGCCATCAGCCCGCTGC
rJMSF015E10+ ACTCGGCGGTGTCGATAGTGAGGCAAGCCATGATGCTCGGCGGCGCCATCAGCCCGCTGC
rJMSF034N22+ ACTCGGCGGTGTCGATAGTGAGGCAAGCCATGATGCTCGGCGGCGCCATCAGCCCGCTGC
rJMSF035N22+ ACTCGGNGGTGTCGATAGTGAGGCAAGNCATGATGCTCGNCGNCNCCATCAGCCCGCTGC
rJMSF008L05+ ACTCGGCGGTGTCGATAGTGAGGCAAGCCATGATGCTCGGCGGCGCCATCAGCCCGCTGC
rJMSF015M16+ ACTCGGCGGTGTCGATAGTGAGGCAAGCCATGATGCTCGGCGGCGCCATCAGCCCGCTGC
____________________________________________________________
consensus ACTCGGCGGTGTCGATAGTGAGGCAAGCCATGATGCTCGGCGGCGCCATCAGCCCGCTGC
. : . : . : . : . : . :
rJMSF024B07+ TGGTGGCGCTGGGGAGAACCAACAGGTTTTACTCCTACGGGGTTTTCGGACTCGCAATCG
rJMSF015E10+ CGGTGGCGCTGGGGAGAACCAACAGGTTTTACTCCTACGGGGTTTTCGGACTCGCAATCG
rJMSF034N22+ TGGTGGCGCTGGGGAGAACCAACAGGTTTTACTCCTACGGGGTTTTCGGACTCGCAATCG
rJMSF035N22+ TGNTGGCGCTGGGGAGAACCAACAGGTTNTNNTCCTACGGNGTTTTCGGACTCNCAATCG
rJMSF008L05+ TGGTGGCGCTGGGGAGAACCAACAGGTTTTACTCCTACGGGGTTTTCGGACTCGCAATCG
rJMSF015M16+ TGGTGGCGCTGGGGAGAACCAACAGGTTTTACTCCTACGGGGTTTTCGGACTCGCAATCG
____________________________________________________________
consensus TGGTGGCGCTGGGGAGAACCAACAGGTTTTACTCCTACGGGGTTTTCGGACTCGCAATCG
. : . : . : . : . : . :
rJMSF024B07+ GTGTGTGTTGCTTGTTTGTGATTTGCTTGCCGGAGACAATGGGGGGAGAAATCTGCGACA
rJMSF015E10+ GTGTGTGTTGCTTGTTTGTGATTTGCTTGCCGGAGACAATGGGGGGAGAAATCTGCGACA
rJMSF034N22+ GTGTGTGTTGCTTGTTTGTGATTTGCTTGCCGGAGACAATGGGGGGAGAAATCTGCGACA
rJMSF035N22+ G
rJMSF008L05+ GTGTGTGTTGCTTGTTTGTGATTTGCTTGCCGGAGACAATGGGGGGAGAAATCTGCGACA
rJMSF015M16+ GTGTGTGTTGCTTGTTTGTGATTTGCTTGCCGGAGACAATGGGGGGAGAAATCTGCGACA
____________________________________________________________
consensus GTGTGTGTTGCTTGTTTGTGATTTGCTTGCCGGAGACAATGGGGGGAGAAATCTGCGACA
. : . : . : . : . : . :
rJMSF024B07+ CAATTGACGAGGAGGAGAGCAAGGGGAACGGAATAAGCAATGTTTGAAATAATACGGTGG
rJMSF015E10+ CAATTGACGAGGAGGAGAGCAAGGGGAACGGAATAAGCAATGTTTGAAATAATACGGTGG
rJMSF034N22+ CAATTGACGAGGAGGAGAGCAAGGGGAACGGAATAAGCAATGTTTGAAATAATACGGTGG
rJMSF008L05+ CAATTGACGAGGAGGAGAGCAAGGGGAACGGAATAAGCAATGTTTGAAATAATACGGTGG
rJMSF015M16+ CAATTGACGAGGAGGAGAGCAAGGGGAACGGAATAAGCAATGTTTGAAATAATACGGTGG
____________________________________________________________
consensus CAATTGACGAGGAGGAGAGCAAGGGGAACGGAATAAGCAATGTTTGAAATAATACGGTGG
. : . : . : . : . : . :
rJMSF024B07+ CCGCCGCCGCCGCCGTAAAGTGTACCGTTTGTCACTCTTGCTTTGCATGCACACAGTAAT
rJMSF015E10+ CCGCCGCCGCCGCCGTAAAGTGTACCGTTTGTCACTCTTGCTTTGCATGCACACAGTAAT
rJMSF034N22+ CCGCCGCCGCCGCCGTAAAGTGTACCGTTTGTCACTCT
rJMSF008L05+ CCGCCGCCGCCGCCGTAAAGTGTACCGTTTGTCACTCTTGCTTTGCATGCACACAGTAAT
rJMSF015M16+ CCGCCGCCGCCGCCGTAAAGTGTACCGTTTGTCACTCTTGCTTTGCATGCACACAGTAAT
____________________________________________________________
consensus CCGCCGCCGCCGCCGTAAAGTGTACCGTTTGTCACTCTTGCTTTGCATGCACACAGTAAT
. : . : . : . : . : . :
rJMSF024B07+ TAAATTTAATTACCGTGATGGGCCCATGGCACTAT
rJMSF015E10+ TAAATTTAATTACCGTGATGGGCCCATGGCACTATTGTACTTAATACTATCT
rJMSF008L05+ TAAATTTAATTACCGTGATGGGCCCATGGCACTATTGTACTTAATACTATCT
rJMSF015M16+ TAAATTTAATTACCGTGATGGGCCCATGGCACTATTGTACTTAATACTATCTCCCAATGT
____________________________________________________________
consensus TAAATTTAATTACCGTGATGGGCCCATGGCACTATTGTACTTAATACTATCTCCCAATGT