Contig 012560:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF005J10+                                        AACCCCGNTTCGCCGCNGCCTCNGTANGGT
JMSF003B22-                     GGAGATCTCTAGAAAGTTGAAACCCCGTTTCGCCGCTGCCTCTGTATGGT
JMSF005J10-                                         AACCCCGTTTCGCCGCTGCCTCTGTATGGT
JMSF015F16-                               AGAAAGTTGAAACCCCGTTTCGCCGCTGCCTCTGTATGGT
                      ____________________________________________________________
consensus                       GGAGATCTCTAGAAAGTTGAAACCCCGTTTCGCCGCTGCCTCTGTATGGT
 
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rJMSF005J10+          TTCATAGCCGTGTCGAGAAAAAATGCGACTTCTTACCACCCGACTCCGCCAAGCTCTGTA
JMSF003B22-           TTCATAGCCGTGTCGAGAAAAAATGCGACTTCTTACCACCCGACTCCGCCAAGCTCTCTA
JMSF005J10-           TTCATAGCCGTGTCGAGAAAAAATGCGACTTCTTACCACCCGACTCCGCCAAGCTCTCTA
JMSF015F16-           TTCATAGCCGTGTCGAGAAAAAATGCGACTTCTTACCACCCGACTCCGCCAAGCTCTCTA
                      ____________________________________________________________
consensus             TTCATAGCCGTGTCGAGAAAAAATGCGACTTCTTACCACCCGACTCCGCCAAGCTCTCTA
 
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rJMSF005J10+          CTCNTCCGCCGCCGCCGCCGCCGCTTCNTNCCTTCCAACNTCATTCGCTCCTCGTGGTGG
JMSF003B22-           CTCCTCCGCCGCCGCCGCCGCCGCTTCTTACCTTCCAACTTCATTCGCTCCTCGTGGTGG
JMSF005J10-           CTCCTCCGCCGCCGCCGCCGCCGCTTCTTACCTTCCAACTTCATTCGCTCCTCGTGGTGG
JMSF015F16-           CTCCTCCGCCGCCGCCGCCGCCGCTTCTTACCTTCCAACTTCATTCGCTCCTCGTGGTGG
                      ____________________________________________________________
consensus             CTCCTCCGCCGCCGCCGCCGCCGCTTCTTACCTTCCAACTTCATTCGCTCCTCGTGGTGG
 
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rJMSF005J10+          TATNTCCAGAGCTCTAACCACTNGTATTCATTNCTCGCCATCTGTTCACTCCCTTAATAA
JMSF003B22-           TATCTCCAGAGCTCTAACCACTTGTATTCATTCCTCGCCATCTGTTCACTCCCTTAATAA
JMSF005J10-           TATCTCCAGAGCTCTAACCACTTGTATTCATTCCTCGCCATCTGTTCACTCCCTTAATAA
JMSF015F16-           TATCTCCAGAGCTCTAACCACTTGTATTCATTCCTCGCCATCTGTTCACTCCCTTAATAA
                      ____________________________________________________________
consensus             TATCTCCAGAGCTCTAACCACTTGTATTCATTCCTCGCCATCTGTTCACTCCCTTAATAA
 
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rJMSF005J10+          TTCNGAATCTCTTCTTAAACCNTACCGNTTCCTCGCANTTCCGTGGT             
JMSF003B22-           TTCCGAATCTCTTCTTAAACCCTACCGCTTCCTCGCATTTCCGTGGTCCGCCACACAACT
JMSF005J10-           TTCCGAATCTCTTCTTAAACCCTACCGCTTCCTCGCATTTCCGTGGTCCGCCACACAACT
JMSF015F16-           TTCCGAATCTCTTCTTAAACCCTACTGCTTCCTCGCATTTCCGTGGTCCGCCACACAACT
                      ____________________________________________________________
consensus             TTCCGAATCTCTTCTTAAACCCTACCGCTTCCTCGCATTTCCGTGGTCCGCCACACAACT
 
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JMSF003B22-           CCGCGGCGTTAAATTGCGCGGTGCTGATGT                              
JMSF005J10-           CCGCGGCGTTAAATTGCGCGGTGCTGATGT                              
JMSF015F16-           CCGCGGCGTTAAATTGCGCGGTGCTGATGTGAAGCCGGGGAATGTGATCGAGAGAAAAGG
rJMSF003B22+                     AATTGCGCGGTGCTGATGTGAAGCCGGGGAATGTGATCGAGAGAAAAGG
                      ____________________________________________________________
consensus             CCGCGGCGTTAAATTGCGCGGTGCTGATGTGAAGCCGGGGAATGTGATCGAGAGAAAAGG
 
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rJMSF003B22+          AAAGATTTATCAGGTGGTGAAGACACAACATACTACGCAAGGAAGAGGAGGAGCTATTAT
rJMSF015F16+                     AGGTGGTGAAGACACAACATACTACGCAAGGAAGAGGAGGAGCTATTAT
                      ____________________________________________________________
consensus             AAAGATTTATCAGGTGGTGAAGACACAACATACTACGCAAGGAAGAGGAGGAGCTATTAT
 
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rJMSF003B22+          ACAGGTAGAGCTCCGGGATGTTGATAGTGGAAACAAAGTGAATGAAAGATTTCATACAGA
rJMSF015F16+          ACAGGTAGAGCTCCGGGATGTTGATAGTGGAAACAAAGTGAATGAAAGATTTCGTACAGA
                      ____________________________________________________________
consensus             ACAGGTAGAGCTCCGGGATGTTGATAGTGGAAACAAAGTGAATGAAAGATTTCGTACAGA
 
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rJMSF003B22+          TGAGGCAGTTGAGAGGGTATTTGCTGAAGAAAAACCTTTTACATACCTTTATACTGATGA
rJMSF015F16+          TGAGGCAGTTGAGAGGGTATTTGCTGAAGAAAAACCTTTTACATACCTTTATACTGATGA
                      ____________________________________________________________
consensus             TGAGGCAGTTGAGAGGGTATTTGCTGAAGAAAAACCTTTTACATACCTTTATACTGATGA
 
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rJMSF003B22+          TGAAACTGGAAATATTGTTCTAATGGAGCCTAATACATATGCACAGCTGGATGTACCAAA
rJMSF015F16+          TGAAACTGGAAATATTGTTCTAATGGAGCCTAATACATATGCACAGCTGGATGTACCAAA
                      ____________________________________________________________
consensus             TGAAACTGGAAATATTGTTCTAATGGAGCCTAATACATATGCACAGCTGGATGTACCAAA
 
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rJMSF003B22+          GCACATGTTCGGTGATTCTTATGTTTTCCTTCAAGATGATATGAGAGTCTGTGTGCAGTT
rJMSF015F16+          GCACATGTTCGGTGATTCTTATGTTTTCCTTCAAGATGATATGAGAGTCTGTGTGCAGTT
                      ____________________________________________________________
consensus             GCACATGTTCGGTGATTCTTATGTTTTCCTTCAAGATGATATGAGAGTCTGTGTGCAGTT
 
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rJMSF003B22+          GTATGATGAAAAGCCGATGTCAGCATCAATTCCTACACGAGTAACATGTACTGTTGCCGA
rJMSF015F16+          GTATGATGAAAAGCCGATGTCAGCATCAATTCCTACACGAGTAACATGTACTGTTGCCGA
                      ____________________________________________________________
consensus             GTATGATGAAAAGCCGATGTCAGCATCAATTCCTACACGAGTAACATGTACTGTTGCCGA
 
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rJMSF003B22+          AACTCCAATTCAAGTGAAGGGTGCTTCAGTTACTCCACAATACAAGAAGGCTGTTTTGGA
rJMSF015F16+          AACTCCAATTCAAGTGAAGGGTGCTTCAGTTACTCCACAATACAAGAAGGCTGTTTTGGA
                      ____________________________________________________________
consensus             AACTCCAATTCAAGTGAAGGGTGCTTCAGTTACTCCACAATACAAGAAGGCTGTTTTGGA
 
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rJMSF003B22+          CAACGGTGTCACTGTCCAGGTACCTGGGCACATCTTACCCGGGGACAAGATAATTATCAA
rJMSF015F16+          CAACGGTGTCACTGTCCAGGTACCTGGGCACATCTTACCCGGGGACAAGATAATTATCAA
                      ____________________________________________________________
consensus             CAACGGTGTCACTGTCCAGGTACCTGGGCACATCTTACCCGGGGACAAGATAATTATCAA
 
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rJMSF003B22+          TACTACTGACAACTCTTACATGAGCAAGGCTTAGAGATCAGAGTGGTTTAACATGATTCA
rJMSF015F16+          TACTACTAACAACTCTTACATGAGCAAGGCTTAGAGATCAGAGTGGTTTAACATGATTCA
                      ____________________________________________________________
consensus             TACTACTGACAACTCTTACATGAGCAAGGCTTAGAGATCAGAGTGGTTTAACATGATTCA
 
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rJMSF003B22+          TTATCAATCAACTGCACTCTCATTGTTGGCAAACATTCTTTGTTGACATTGCAGCTCGAT
rJMSF015F16+          TTATCAATCAACTGCACTCTCATTGTTGGCAAACATTCTTTGTTGACATTGCAGCTCGAT
                      ____________________________________________________________
consensus             TTATCAATCAACTGCACTCTCATTGTTGGCAAACATTCTTTGTTGACATTGCAGCTCGAT
 
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rJMSF003B22+          AGATGTAACAAGCATTCTAATAATTCAACTGCATTTTTAATAATGTTATCTTTAGTTTTA
rJMSF015F16+          AGATGTAACAAGCATTCTAATAATTCAACTGCATTTTTAATAATGTTATCTTTAGTTTTA
                      ____________________________________________________________
consensus             AGATGTAACAAGCATTCTAATAATTCAACTGCATTTTTAATAATGTTATCTTTAGTTTTA
 
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rJMSF003B22+          CATGGTGAATTTTTGTTGGATGTTAAATAGTAAGATTAGAACCAGTGGCTGGAGAGTG  
rJMSF015F16+          CATGGTGAATTTTTGTTGGATGTTAAATAGTAAGATTAGAACCAGTGGCTGGAGAGTGTT
                      ____________________________________________________________
consensus             CATGGTGAATTTTTGTTGGATGTTAAATAGTAAGATTAGAACCAGTGGCTGGAGAGTGTT