Contig 012555:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF004O02Sequence355007754 (4)408012555 (4)ref|XP_009784820.1|3e-05PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X2 [Nic
JMSF009E19Sequence377018849gb|ABN10954.2|1e-14APETALA2-like protein [Ipomoea nil]788012555 (4)ref|XP_009784819.1|6e-52PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X1 [Nic
JMSF013E05Sequence544007754 (4)gb|ABN10954.2|2e-29APETALA2-like protein [Ipomoea nil]772012555 (4)ref|XP_009784820.1|4e-41PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X2 [Nic
JMSF049J06Sequence660007754 (4)gb|ABN10954.2|3e-59APETALA2-like protein [Ipomoea nil]654012555 (4)ref|XP_009784820.1|8e-30PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X2 [Nic

Alignment

This contig is upended


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rJMSF009E19+                                                             CGACAGTGA
                      ____________________________________________________________
consensus                                                                CGACAGTGA
 
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rJMSF009E19+          AGTAGAAGCTGCAAGGGCTTATGATAAGGCAGCTATCAAATTTAATGGGAGGGAGGCTGT
rJMSF013E05+                AGCTGCAAGGGCTTATGATAAGGCAGCTATCAAATTAAT--GGAGGGAGGCTGT
                      ____________________________________________________________
consensus             AGTAGAAGCTGCAAGGGCTTATGATAAGGCAGCTATCAAATTTATTGGGAGGGAGGCTGT
 
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rJMSF009E19+          TACTAACTTTGACCCCAGTACATATGATGGACAAACAATCTCTAACCCACTAAATGAAGG
rJMSF049J06+                                                          ACTAAATGAAGG
rJMSF013E05+          TACTAACTTTGACCCCAGTACATATGATGGACAAACAATCTCTAACCCACTAAATGAAGG
                      ____________________________________________________________
consensus             TACTAACTTTGACCCCAGTACATATGATGGACAAACAATCTCTAACCCACTAAATGAAGG
 
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rJMSF009E19+          TAGCCAGCATGATCTTGATCTGAACTTGGGGATTATAACCTCTTCTCCTAAAGAAAACAG
rJMSF049J06+          TAGCCAGCATGATCTTGATCTGAACTTGGGGATTATAACCTCTTCTCCTAAAGAAAACAG
rJMSF013E05+          TAGCCAGCATGATCTTGATCTGAACTTGGGGATTATAACCTCTTCTCCTAAAGAAAACAG
                      ____________________________________________________________
consensus             TAGCCAGCATGATCTTGATCTGAACTTGGGGATTATAACCTCTTCTCCTAAAGAAAACAG
 
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rJMSF009E19+          GAACACAGGAAATCTCCAGTACCACTTGCTCCATTCAGGAACATCAGATATGGATAAATC
rJMSF049J06+          GAACACAGGAAATCTCCAGTACCACTTGCTCCATTCAGGAACATCAGATATGGATAAATC
rJMSF013E05+          GAACACAGGAAATCTCCAGTACCACTTGCTCCATTCAGGAACATCAGATATGGATAAATC
                      ____________________________________________________________
consensus             GAACACAGGAAATCTCCAGTACCACTTGCTCCATTCAGGAACATCAGATATGGATAAATC
 
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rJMSF009E19+          TGGCGAAACAAAACTTGTTAGTCCAGATCTCAATGCAAGATTGATACCATCTGAACAACC
rJMSF049J06+          TGGCGAAACAAAACTTGTTAGTCCAGATCTCAATGCAAGATTGATACCATCTGAACAACC
rJMSF013E05+          TGGCGAAACAAAACTTGTTAGTCCAGATCTCAATGCAAGATTGATACCATCTGAACAACC
                      ____________________________________________________________
consensus             TGGCGAAACAAAACTTGTTAGTCCAGATCTCAATGCAAGATTGATACCATCTGAACAACC
 
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rJMSF009E19+          TCAACTGTGCACTGGAGTCTATTCAAATGTCTATCCTAAATCCGAGGATTGGCAGCAAAT
rJMSF049J06+          TCAACTGTGCACTGGAGTCTATTCAAATGTCTATCCTAAATCCG---------AGCAAAT
rJMSF013E05+          TCAACTGTGCACTGGAGTCTATTCAAATGTCTATCCTAAATCCG---------AGCAAAT
                      ____________________________________________________________
consensus             TCAACTGTGCACTGGAGTCTATTCAAATGTCTATCCTAAATCCG---------AGCAAAT
 
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rJMSF004O02+            CAAGTGAGAGAAGGATGGAGGTGTGTTCTTCACAAGGAGCGCTAAAGTGGGGGAGCCA
rJMSF009E19+          GGCAAGTGAGAGAAGGATGGAGGTGTGTTCTTCACAAGGAGCGCTAAAGTGGGGGAGCCA
rJMSF049J06+          GGCAAGTGAGAGAAGGATGGAGGTGTGTTCTTCACAAGGAGCGCTAAAGTGGGGGAGCCA
rJMSF013E05+          GGCAAGTGAGAGAAGGATGGAGGTGTGTTCTTCACAAGGAGCGCTAAAGTGGGGGAGCCA
                      ____________________________________________________________
consensus             GGCAAGTGAGAGAAGGATGGAGGTGTGTTCTTCACAAGGAGCGCTAAAGTGGGGGAGCCA
 
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rJMSF004O02+          AAGACATGGTCACATTGGCACTACAAACATGGTAGCAATGTTGTCAGCAGCATCATCAGG
rJMSF009E19+          AAGACATGGTCACATTGGCACTACAAACATGGTAGCAATGTTGTCAGCAGCATCATCAGG
rJMSF049J06+          AAGACATGGTCACATTGGCACTACAAACATGGTAGCAATGTTGTCAGCAGCATCATCAGG
rJMSF013E05+          AAGACATGGTCACATTGGCACTACAAACATGGTAGCAATGTTGTCAGCAGCATCATCAGG
                      ____________________________________________________________
consensus             AAGACATGGTCACATTGGCACTACAAACATGGTAGCAATGTTGTCAGCAGCATCATCAGG
 
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rJMSF004O02+          ATTCTCAACTCCACCTACCACAAAGTCTGTTGCTGTTTCAGTTTCAACTTCTCCCATCAC
rJMSF009E19+          ATTCTCAACTCCACCTACCACAAAGTCTGTTGCTGTTTCAGTTTCAACTTCTCCCATCAC
rJMSF049J06+          ATTCTCAACTCCACCTACCACAAAGTCTGTTGCTGTTTCAGTTTCAACTTCTCCCATCAC
rJMSF013E05+          ATTCTCAACTCCACCTACCACAAAGTCTGTTGCTGTTTCAGTTTCAACTTCTCCCATCAC
                      ____________________________________________________________
consensus             ATTCTCAACTCCACCTACCACAAAGTCTGTTGCTGTTTCAGTTTCAACTTCTCCCATCAC
 
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rJMSF004O02+          AGCTCCCAAGGTGACATCCCTGAATCTTTGCTTCGCGTACCCCAATGCATCAACAAATAC
rJMSF009E19+          AGCTCCCAAGGTGACATCCCTGAATCTTTGCTTCGCGTACCCCAATGCATCAACAAATAC
rJMSF049J06+          AGCTCCCAAGGTGACATCCCTGAATCTTTGCTTCGCGTACCCCAATGCATCAACAAATAC
rJMSF013E05+          AGCTCCCAAGGTGACATCCCTGAATCTTTGCTTCGCGTACCCCAATGCATCAACAAATAC
                      ____________________________________________________________
consensus             AGCTCCCAAGGTGACATCCCTGAATCTTTGCTTCGCGTACCCCAATGCATCAACAAATAC
 
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rJMSF004O02+          ACCTACCCAATCCTATTACCAGCAGGTCAGGCCACCACAATAGCCTAACGTCTTCGATCT
rJMSF009E19+          ACCTACCCAATCCTATTACCAGCAGGTCAGGCCACCACAATAGCCTAACGTCTTCGATCT
rJMSF049J06+          ACCTACCCAATCCTATTACCAGCAGGTCAGGCCACCACAATAGCCTAACGTCTTCGATCT
rJMSF013E05+          ACCTACCCAATCCTATTACCAGCAGGTCAGGCCACCACAATAGCCTAACGTCTTCGATCT
                      ____________________________________________________________
consensus             ACCTACCCAATCCTATTACCAGCAGGTCAGGCCACCACAATAGCCTAACGTCTTCGATCT
 
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rJMSF004O02+          ATTGACTATTGAATATTGATTGCAGTAGATAAGATTGTGACTCTTTTGTACAATTACTGT
rJMSF009E19+          ATTGACTATTGAATATTGATTGCAGTAGATAAGATTGTGACTCTTTTGTACAATTACTGT
rJMSF049J06+          ATTGACTATTGAATATTGATTGCAGTAGATAAGATTGTGACTCTTTTGTACAATTACTGT
rJMSF013E05+          ATTGACTATTGAATATTGATTGCAGTAGATAAGATTGTGACTCTTTTGTACAATTACTGT
                      ____________________________________________________________
consensus             ATTGACTATTGAATATTGATTGCAGTAGATAAGATTGTGACTCTTTTGTACAATTACTGT
 
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rJMSF004O02+          TGATTGATCACATACAGCTTTTGTAACTTCAGAGCAGTATATGCATTA            
rJMSF009E19+          TGATTGATCACATACAGCTTTTGTAACTTCAGAGCAGTATATGCATTATTATAGAGCAA 
rJMSF049J06+          TGATTGATCACATACAGCTTTTGTAACTTCAGAGCAGTATATGCATTA            
rJMSF013E05+          TGATTGATCACATACAGCTTTTGTAACTTCAGAGCAGTATATGCATTATTATAGAGCAAC
                      ____________________________________________________________
consensus             TGATTGATCACATACAGCTTTTGTAACTTCAGAGCAGTATATGCATTATTATAGAGCAAC