Contig 012555:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF004O02Sequence355007754 (4)408012555 (4)ref|XP_009784820.1|3e-05PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X2 [Nic
JMSF009E19Sequence377018849gb|ABN10954.2|1e-14APETALA2-like protein [Ipomoea nil]788012555 (4)ref|XP_009784819.1|6e-52PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X1 [Nic
JMSF013E05Sequence544007754 (4)gb|ABN10954.2|2e-29APETALA2-like protein [Ipomoea nil]772012555 (4)ref|XP_009784820.1|4e-41PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X2 [Nic
JMSF049J06Sequence660007754 (4)gb|ABN10954.2|3e-59APETALA2-like protein [Ipomoea nil]654012555 (4)ref|XP_009784820.1|8e-30PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X2 [Nic

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF009E19+ CGACAGTGA
                      ____________________________________________________________
consensus CGACAGTGA
 
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rJMSF009E19+ AGTAGAAGCTGCAAGGGCTTATGATAAGGCAGCTATCAAATTTAATGGGAGGGAGGCTGT
rJMSF013E05+ AGCTGCAAGGGCTTATGATAAGGCAGCTATCAAATTAAT--GGAGGGAGGCTGT
                      ____________________________________________________________
consensus AGTAGAAGCTGCAAGGGCTTATGATAAGGCAGCTATCAAATTTATTGGGAGGGAGGCTGT
 
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rJMSF009E19+ TACTAACTTTGACCCCAGTACATATGATGGACAAACAATCTCTAACCCACTAAATGAAGG
rJMSF049J06+ ACTAAATGAAGG
rJMSF013E05+ TACTAACTTTGACCCCAGTACATATGATGGACAAACAATCTCTAACCCACTAAATGAAGG
                      ____________________________________________________________
consensus TACTAACTTTGACCCCAGTACATATGATGGACAAACAATCTCTAACCCACTAAATGAAGG
 
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rJMSF009E19+ TAGCCAGCATGATCTTGATCTGAACTTGGGGATTATAACCTCTTCTCCTAAAGAAAACAG
rJMSF049J06+ TAGCCAGCATGATCTTGATCTGAACTTGGGGATTATAACCTCTTCTCCTAAAGAAAACAG
rJMSF013E05+ TAGCCAGCATGATCTTGATCTGAACTTGGGGATTATAACCTCTTCTCCTAAAGAAAACAG
                      ____________________________________________________________
consensus TAGCCAGCATGATCTTGATCTGAACTTGGGGATTATAACCTCTTCTCCTAAAGAAAACAG
 
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rJMSF009E19+ GAACACAGGAAATCTCCAGTACCACTTGCTCCATTCAGGAACATCAGATATGGATAAATC
rJMSF049J06+ GAACACAGGAAATCTCCAGTACCACTTGCTCCATTCAGGAACATCAGATATGGATAAATC
rJMSF013E05+ GAACACAGGAAATCTCCAGTACCACTTGCTCCATTCAGGAACATCAGATATGGATAAATC
                      ____________________________________________________________
consensus GAACACAGGAAATCTCCAGTACCACTTGCTCCATTCAGGAACATCAGATATGGATAAATC
 
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rJMSF009E19+ TGGCGAAACAAAACTTGTTAGTCCAGATCTCAATGCAAGATTGATACCATCTGAACAACC
rJMSF049J06+ TGGCGAAACAAAACTTGTTAGTCCAGATCTCAATGCAAGATTGATACCATCTGAACAACC
rJMSF013E05+ TGGCGAAACAAAACTTGTTAGTCCAGATCTCAATGCAAGATTGATACCATCTGAACAACC
                      ____________________________________________________________
consensus TGGCGAAACAAAACTTGTTAGTCCAGATCTCAATGCAAGATTGATACCATCTGAACAACC
 
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rJMSF009E19+ TCAACTGTGCACTGGAGTCTATTCAAATGTCTATCCTAAATCCGAGGATTGGCAGCAAAT
rJMSF049J06+ TCAACTGTGCACTGGAGTCTATTCAAATGTCTATCCTAAATCCG---------AGCAAAT
rJMSF013E05+ TCAACTGTGCACTGGAGTCTATTCAAATGTCTATCCTAAATCCG---------AGCAAAT
                      ____________________________________________________________
consensus TCAACTGTGCACTGGAGTCTATTCAAATGTCTATCCTAAATCCG---------AGCAAAT
 
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rJMSF004O02+ CAAGTGAGAGAAGGATGGAGGTGTGTTCTTCACAAGGAGCGCTAAAGTGGGGGAGCCA
rJMSF009E19+ GGCAAGTGAGAGAAGGATGGAGGTGTGTTCTTCACAAGGAGCGCTAAAGTGGGGGAGCCA
rJMSF049J06+ GGCAAGTGAGAGAAGGATGGAGGTGTGTTCTTCACAAGGAGCGCTAAAGTGGGGGAGCCA
rJMSF013E05+ GGCAAGTGAGAGAAGGATGGAGGTGTGTTCTTCACAAGGAGCGCTAAAGTGGGGGAGCCA
                      ____________________________________________________________
consensus GGCAAGTGAGAGAAGGATGGAGGTGTGTTCTTCACAAGGAGCGCTAAAGTGGGGGAGCCA
 
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rJMSF004O02+ AAGACATGGTCACATTGGCACTACAAACATGGTAGCAATGTTGTCAGCAGCATCATCAGG
rJMSF009E19+ AAGACATGGTCACATTGGCACTACAAACATGGTAGCAATGTTGTCAGCAGCATCATCAGG
rJMSF049J06+ AAGACATGGTCACATTGGCACTACAAACATGGTAGCAATGTTGTCAGCAGCATCATCAGG
rJMSF013E05+ AAGACATGGTCACATTGGCACTACAAACATGGTAGCAATGTTGTCAGCAGCATCATCAGG
                      ____________________________________________________________
consensus AAGACATGGTCACATTGGCACTACAAACATGGTAGCAATGTTGTCAGCAGCATCATCAGG
 
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rJMSF004O02+ ATTCTCAACTCCACCTACCACAAAGTCTGTTGCTGTTTCAGTTTCAACTTCTCCCATCAC
rJMSF009E19+ ATTCTCAACTCCACCTACCACAAAGTCTGTTGCTGTTTCAGTTTCAACTTCTCCCATCAC
rJMSF049J06+ ATTCTCAACTCCACCTACCACAAAGTCTGTTGCTGTTTCAGTTTCAACTTCTCCCATCAC
rJMSF013E05+ ATTCTCAACTCCACCTACCACAAAGTCTGTTGCTGTTTCAGTTTCAACTTCTCCCATCAC
                      ____________________________________________________________
consensus ATTCTCAACTCCACCTACCACAAAGTCTGTTGCTGTTTCAGTTTCAACTTCTCCCATCAC
 
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rJMSF004O02+ AGCTCCCAAGGTGACATCCCTGAATCTTTGCTTCGCGTACCCCAATGCATCAACAAATAC
rJMSF009E19+ AGCTCCCAAGGTGACATCCCTGAATCTTTGCTTCGCGTACCCCAATGCATCAACAAATAC
rJMSF049J06+ AGCTCCCAAGGTGACATCCCTGAATCTTTGCTTCGCGTACCCCAATGCATCAACAAATAC
rJMSF013E05+ AGCTCCCAAGGTGACATCCCTGAATCTTTGCTTCGCGTACCCCAATGCATCAACAAATAC
                      ____________________________________________________________
consensus AGCTCCCAAGGTGACATCCCTGAATCTTTGCTTCGCGTACCCCAATGCATCAACAAATAC
 
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rJMSF004O02+ ACCTACCCAATCCTATTACCAGCAGGTCAGGCCACCACAATAGCCTAACGTCTTCGATCT
rJMSF009E19+ ACCTACCCAATCCTATTACCAGCAGGTCAGGCCACCACAATAGCCTAACGTCTTCGATCT
rJMSF049J06+ ACCTACCCAATCCTATTACCAGCAGGTCAGGCCACCACAATAGCCTAACGTCTTCGATCT
rJMSF013E05+ ACCTACCCAATCCTATTACCAGCAGGTCAGGCCACCACAATAGCCTAACGTCTTCGATCT
                      ____________________________________________________________
consensus ACCTACCCAATCCTATTACCAGCAGGTCAGGCCACCACAATAGCCTAACGTCTTCGATCT
 
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rJMSF004O02+ ATTGACTATTGAATATTGATTGCAGTAGATAAGATTGTGACTCTTTTGTACAATTACTGT
rJMSF009E19+ ATTGACTATTGAATATTGATTGCAGTAGATAAGATTGTGACTCTTTTGTACAATTACTGT
rJMSF049J06+ ATTGACTATTGAATATTGATTGCAGTAGATAAGATTGTGACTCTTTTGTACAATTACTGT
rJMSF013E05+ ATTGACTATTGAATATTGATTGCAGTAGATAAGATTGTGACTCTTTTGTACAATTACTGT
                      ____________________________________________________________
consensus ATTGACTATTGAATATTGATTGCAGTAGATAAGATTGTGACTCTTTTGTACAATTACTGT
 
. : . : . : . : . : . :
rJMSF004O02+ TGATTGATCACATACAGCTTTTGTAACTTCAGAGCAGTATATGCATTA
rJMSF009E19+ TGATTGATCACATACAGCTTTTGTAACTTCAGAGCAGTATATGCATTATTATAGAGCAA
rJMSF049J06+ TGATTGATCACATACAGCTTTTGTAACTTCAGAGCAGTATATGCATTA
rJMSF013E05+ TGATTGATCACATACAGCTTTTGTAACTTCAGAGCAGTATATGCATTATTATAGAGCAAC
                      ____________________________________________________________
consensus TGATTGATCACATACAGCTTTTGTAACTTCAGAGCAGTATATGCATTATTATAGAGCAAC