Contig 012554:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF023I13+                             TTCAGATGATGGAATGCATAAGAAGACAACTTATGACTTGG
rJMSF012O16+                           AATTCAGATGATGGAATGCATAAGAAGACAACTTATGACTTGG
                      ____________________________________________________________
consensus                              AATTCAGATGATGGAATGCATAAGAAGACAACTTATGACTTGG
 
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rJMSF023I13+          NTTTAATGAGCGCCGTGAAATTAGTATGCAGTGGACATCAATTCTGGTGCCTACCGCTGA
rJMSF033O20+           TTTAATGAGCGCCGTGAAATTAGTATGCAGTGGACATCNATTCTGGTGCCTACCGCTGA
rJMSF012O16+          -TTTAATGAGCGCCGTGAAATTAGTATGCAGTGGACATCAATTCTGGTGCCTACCGCTGA
                      ____________________________________________________________
consensus             NTTTAATGAGCGCCGTGAAATTAGTATGCAGTGGACATCAATTCTGGTGCCTACCGCTGA
 
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rJMSF023I13+          GAGGCGTGTTGCCGAAGCTCTAGAGCGTGCCCGGACGTACCAAGTTCTGCGAGCTAATGA
rJMSF033O20+          GAGGCGTGTTGCCGAAGCTCTAGAGCGTGCCCGGACGTACCAAGTTCTGCGAGCTAATGA
rJMSF012O16+          GAGGCGTGTTGCCGAAGCTCTAGAGCGTGCCCGGACGTACCAAGTTCTGCGAGCTAATGA
                      ____________________________________________________________
consensus             GAGGCGTGTTGCCGAAGCTCTAGAGCGTGCCCGGACGTACCAAGTTCTGCGAGCTAATGA
 
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rJMSF023I13+          AGCTGAGTTTGAAGTAATATCCCACGAGGGAACCAATATTGTTGACATTAGAAATCGGTG
rJMSF033O20+          AGCTGAGTTTGAAGTAATATCCCACGAGGGAACCAATATTGTTGACATTAGAAATCGGTG
rJMSF012O16+          AGCTGAGTTTGAAGTAATATCCCACGAGGGAACCAATATTGTTGACATTAGAAATCGGTG
                      ____________________________________________________________
consensus             AGCTGAGTTTGAAGTAATATCCCACGAGGGAACCAATATTGTTGACATTAGAAATCGGTG
 
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rJMSF023I13+          CTGCCTGTGTCGGGGCTGGCAGCTGTATGGTTTACCCTGCGCACATGCTGTTGCAGCTCT
rJMSF033O20+          CTGCCTGTGTCGGGGCTGGCAGCTGTATGGTTTACCCTGCGCACATGCTGTTGCAGCTCT
rJMSF012O16+          CTGCCTGTGTCGGGGCTGGCAGCTGTATGGTTTACCCTGCGCACATGCTGTTGCAGCTCT
                      ____________________________________________________________
consensus             CTGCCTGTGTCGGGGCTGGCAGCTGTATGGTTTACCCTGCGCACATGCTGTTGCAGCTCT
 
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rJMSF023I13+          ACTTTCTTGCAGGCAAAATGTCCATCGATTCACAGAAAGCTGCTTCACAGTTGCAACGTA
rJMSF033O20+          ACTTTCTTGCAGGCAAAATGTCCATCGATTCACAGAAAGCTGCTTCACAGTTGCAACGTA
rJMSF012O16+          ACTTTCTTGCAGGCAAAATGTCCATCGATTCACAGAAAGCTGCTTCACAGTTGCAACGTA
                      ____________________________________________________________
consensus             ACTTTCTTGCAGGCAAAATGTCCATCGATTCACAGAAAGCTGCTTCACAGTTGCAACGTA
 
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rJMSF023I13+          TCGGAAGACATATTCTCAAACCATACATCCCATTCCAGATAAATCGTTATGGAAGGAGTT
rJMSF033O20+          TCGGAAGACATATTCTCAAACCATACATCCCATTCCAGATAAATCGTTATGGAAGGAGTT
rJMSF012O16+          TCGGAAGACATATTCTCAAACCATACATCCCATTCCAGATAAATCGTTATGGAAGGAGTT
                      ____________________________________________________________
consensus             TCGGAAGACATATTCTCAAACCATACATCCCATTCCAGATAAATCGTTATGGAAGGAGTT
 
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rJMSF023I13+          AACTGAAGGGGATCCTGATGCTGTCAAAGCTGACGAGCTTTTAATTAATCCTCCCAAATC
rJMSF033O20+          AACTGAAGGGGATCCTGATGCTGTCAAAGCTGACGAGCTTTTAATTAATCCTCCCAAATC
rJMSF012O16+          AACTGAAGGGGATCCTGATGCTGTCAAAGCTGACGAGCTTTTAATTAATCCTCCCAAATC
                      ____________________________________________________________
consensus             AACTGAAGGGGATCCTGATGCTGTCAAAGCTGACGAGCTTTTAATTAATCCTCCCAAATC
 
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rJMSF023I13+          ACTTCGCCCTCCTGGCCGTCCAAGAAAAAAAAGAGTTAGAGCAGAAGACCGTGGTCGTGT
rJMSF033O20+          ACTTCGCCCTCCTGGCCGTCCAAGAAAAAAAAGAGTTAGAGCAGAAGACCGTGGTCGTGT
rJMSF012O16+          ACTTCGCCCTCCTGGCCGTCCAAGAAAAAAAAGAGTTAGAGCAGAAGACCGTGGTCGTGT
                      ____________________________________________________________
consensus             ACTTCGCCCTCCTGGCCGTCCAAGAAAAAAAAGAGTTAGAGCAGAAGACCGTGGTCGTGT
 
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rJMSF023I13+          GAAGCGAGTTGTGCATTGCAGTCGTTGCAATCAGACCGGGCACTTTAGAACAACATGTGC
rJMSF033O20+          GAAGCGAGTTGTGCATTGCAGTCGTTGCAATCAGACCGGGCACTTTAGAACAACATGTGC
rJMSF012O16+          GAAGCGAGTTGTGCATTGCAGTCGTTGCAATCAGACCGGGCACTTTAGAACAACATGTGC
                      ____________________________________________________________
consensus             GAAGCGAGTTGTGCATTGCAGTCGTTGCAATCAGACCGGGCACTTTAGAACAACATGTGC
 
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rJMSF023I13+          AGCACCAATTTGAGTTATCATTATCTGTCTGAGGGTAAACTCCCTTGGCAAAGATTTCTC
rJMSF033O20+          AGCACCAATTTGAGTTATCATTATCTGTCTGAGGGTAAACTCCCTTGGCAAAGATTTCTC
rJMSF012O16+          AGCACCAATTTGAGTTATCATTATCTGTCTGAGGGTAAACTCCCTTGGCAAAGATTTCTC
                      ____________________________________________________________
consensus             AGCACCAATTTGAGTTATCATTATCTGTCTGAGGGTAAACTCCCTTGGCAAAGATTTCTC
 
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rJMSF023I13+          TTATATATCTTCTTGCTCAATTTTTATTAGTTAGAATTAGCTAAAGTTTTTAGTGTAAGA
rJMSF033O20+          TTATATATCTTCTTGCTCAATTTTTATTAGTTAGAATTAGCTAAAGTTTTTAGTGTAAGA
rJMSF012O16+          TTATATATCTTCTTGCTCAATTTTTATTAGTTAGAATTAGCTAAAGTTTTTAGTGTAAGA
                      ____________________________________________________________
consensus             TTATATATCTTCTTGCTCAATTTTTATTAGTTAGAATTAGCTAAAGTTTTTAGTGTAAGA
 
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rJMSF023I13+          GTTGTCTATGAACTAGGTCATTAAGCATGTTAATCAATTAATGGTGTGAAACTTA     
rJMSF033O20+          GTTGTCTATGAACTAGGTCATTAAGCATGTTAATCAATTAATGGTGTGAAACTTA     
rJMSF012O16+          GTTGTCTATGAACTAGGTCATTAAGCATGTTAATCAATTAATGGTGTGAAACTTAATAAT
                      ____________________________________________________________
consensus             GTTGTCTATGAACTAGGTCATTAAGCATGTTAATCAATTAATGGTGTGAAACTTAATAAT