Contig 012551:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF007J02Sequence392012551 (4)gb|KJB27515.1|2e-56hypothetical protein B456_005G172500 [Gossypium raimondii] gb|KJB27518.1| hypoth736012551 (4)ref|XP_006341759.1|9e-142PREDICTED: mitotic spindle checkpoint protein MAD2-like [Solanum tuberosum]
JMSF012E21Sequence238012551 (4)ref|XP_003580011.1|4e-19PREDICTED: mitotic spindle checkpoint protein MAD2 isoform X1 [Brachypodium dis733012551 (4)ref|XP_006341759.1|1e-130PREDICTED: mitotic spindle checkpoint protein MAD2-like [Solanum tuberosum]

Alignment

This contig is upended


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JMSF012E21-                             GGAACTCATCAAAACGCAAAACCTAAATTTTAGATCATTCGA
JMSF007J02-                           GGGGAACTCATCAAAACGCAAAACCTAAATTTTAGATCATTCGA
                      ____________________________________________________________
consensus                             GGGGAACTCATCAAAACGCAAAACCTAAATTTTAGATCATTCGA
 
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JMSF012E21-           AACCACCAGCCCCTACTTCTCTTGAGTTGAATTTAGAATCTCACATTCTAAGCATTCAGA
JMSF007J02-           AACCACCAGCCCCTACTTCTCTTGAGTTGAATTTAGAATCTCACATTCTAAGCATTCAGA
rJMSF007J02+                                                               ATTCAGA
                      ____________________________________________________________
consensus             AACCACCAGCCCCTACTTCTCTTGAGTTGAATTTAGAATCTCACATTCTAAGCATTCAGA
 
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JMSF012E21-           AACATGGCTTCAAGAACAGCCTCCAAAGATATAATCACTCTTCGGGGATCAGCCGCTATT
JMSF007J02-           AACATGGCTTCAAGAACAGCCTCCAAAGATATAATCACTCTTCGGGGATCAGCCGCTATT
rJMSF007J02+          AACATGGCTTCAAGAACAGCCTCCAAAGATATAATCACTCTTCGGGGATCAGCCGCTATT
rJMSF012E21+                                                         ATCAGCCGCTATT
                      ____________________________________________________________
consensus             AACATGGCTTCAAGAACAGCCTCCAAAGATATAATCACTCTTCGGGGATCAGCCGCTATT
 
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JMSF012E21-           GTCAGTGAATTCTTCGGTTATGCTGCAAATAGTATTTTATACAACCGCGGTTTGTATCCT
JMSF007J02-           GTCAGTGAATTCTTCGGTTATGCTGCAAATAGTATTTTATACAACCGCGGTTTGTATCCT
rJMSF007J02+          GTCAGTGAATTCTTCGGTTATGCTGCAAATAGTATTTTATACAACCGCGGTTTGTATCCT
rJMSF012E21+          GTCAGTGAATTCTTCGGTTATGCTGCAAATAGTATTTTATACAACCGCGGTTTGTATCCT
                      ____________________________________________________________
consensus             GTCAGTGAATTCTTCGGTTATGCTGCAAATAGTATTTTATACAACCGCGGTTTGTATCCT
 
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JMSF012E21-           GAANAGAGTTTCGCGA                                            
JMSF007J02-           GAAGAGAGTTTCGCGAAGGTGAAGAAGTATGGGCTTCCGATGTTGCTCACTCAAGATGAA
rJMSF007J02+          GAAGAGAGTTTCGCGAAGGTGAAGAAGTATGGGCTTCCGATGTTGCTCACTCAAGATGAA
rJMSF012E21+          GAAGAGAGTTTCGCGAAGGTGAAGAAGTATGGGCTTCCGATGTTGCTCACTCAAGATGAA
                      ____________________________________________________________
consensus             GAAGAGAGTTTCGCGAAGGTGAAGAAGTATGGGCTTCCGATGTTGCTCACTCAAGATGAA
 
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JMSF007J02-           GGTGTCAAAACCTTCATTTCCAACTTAACAGCCCAAATTTCTGAGTGGCTGGAGGCCGGG
rJMSF007J02+          GGTGTCAAAACCTTCATTTCCAACTTAACAGCCCAAATTTCTGAGTGGCTGGAGGCCGGG
rJMSF012E21+          GGTGTCAAAACCTTCATTTCCAACTTAACAGCCCAAATTTCTGAGTGGCTGGAGGCCGGG
                      ____________________________________________________________
consensus             GGTGTCAAAACCTTCATTTCCAACTTAACAGCCCAAATTTCTGAGTGGCTGGAGGCCGGG
 
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JMSF007J02-           AAACTACAGAGGGTTGTGCTTGTGATCATGAGTAAGGCCAGTGGTGAG            
rJMSF007J02+          AAACTACAGAGGGTTGTGCTTGTGATCATGAGTAAGGCCAGTGGTGAGGTGTTAGAGAGG
rJMSF012E21+          AAACTACAGAGGGTTGTGCTTGTGATCATGAGTAAGGCCAGTGGTGAGGTGTTAGAGAGG
                      ____________________________________________________________
consensus             AAACTACAGAGGGTTGTGCTTGTGATCATGAGTAAGGCCAGTGGTGAGGTGTTAGAGAGG
 
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rJMSF007J02+          TGGAATTTCAGTATTGAGACAGACAGTGAGGTTGTTGAGAAAGGTGTTTCAAGGGAGAAG
rJMSF012E21+          TGGAATTTCAGTATTGAGACAGACAGTGAGGTTGTTGAGAAAGGTGTTTCAAGGGAGAAG
                      ____________________________________________________________
consensus             TGGAATTTCAGTATTGAGACAGACAGTGAGGTTGTTGAGAAAGGTGTTTCAAGGGAGAAG
 
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rJMSF007J02+          AGTGATAAAGAAATAATGCGCGAAATTCAAGCGATTATGAGACAAATAGCTTCCAGCATT
rJMSF012E21+          AGTGATAAAGAAATAATGCGCGAAATTCAAGCGATTATGAGACAAATAGCTTCCAGCATT
                      ____________________________________________________________
consensus             AGTGATAAAGAAATAATGCGCGAAATTCAAGCGATTATGAGACAAATAGCTTCCAGCATT
 
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rJMSF007J02+          ACATATCTCCCATGCCTTGATGAAGCATGCGTGTTCGATGTGTTAGCCTACACTGATACA
rJMSF012E21+          ACATATCTCCCATGCCTTGATGAAGCATGCGTGTTCGATGTGTTAGCCTACACTGATACA
                      ____________________________________________________________
consensus             ACATATCTCCCATGCCTTGATGAAGCATGCGTGTTCGATGTGTTAGCCTACACTGATACA
 
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rJMSF007J02+          GATGTTGCAGTCCCGTTCACCTGGATCGAAAGTGACCCTAAACTGATAGCAAATCCACAA
rJMSF012E21+          GATGTTGCAGTCCCGTTCACCTGGATCGAAAGTGACCCTAAACTGATAGCAAATCCACAA
                      ____________________________________________________________
consensus             GATGTTGCAGTCCCGTTCACCTGGATCGAAAGTGACCCTAAACTGATAGCAAATCCACAA
 
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rJMSF007J02+          ATGGTCAAATTGCATTCCTTTGATACCAAGATACACAAGGTTGACACTCTGGTTTCCTAC
rJMSF012E21+          ATGGTCAAATTGCATTCCTTTGATACCAAGATACACAAGGTTGACACTCTGGTTTCCTAC
                      ____________________________________________________________
consensus             ATGGTCAAATTGCATTCCTTTGATACCAAGATACACAAGGTTGACACTCTGGTTTCCTAC
 
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rJMSF007J02+          AAGAATGATGATGAGTGGGATGAGGCATGAATGAATGTTAGTTTTAGGCAGTTGTCTTTA
rJMSF012E21+          AAGAATGATGATGAGTGGGATGAGGCATGAATGAATGTTAGTTTTAGGCAGTTGTCTTTA
                      ____________________________________________________________
consensus             AAGAATGATGATGAGTGGGATGAGGCATGAATGAATGTTAGTTTTAGGCAGTTGTCTTTA
 
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rJMSF007J02+          TTGTCCAATGTGTTTTAAGTTTGTGAATCGTCAATTCACATTTAGTATTATGTAAGTGAG
rJMSF012E21+          TTGTCCAATGTGTTTTAAGTTTGTGAATCGTCAATTCACATTTAGTATTATGTAAGTGAG
                      ____________________________________________________________
consensus             TTGTCCAATGTGTTTTAAGTTTGTGAATCGTCAATTCACATTTAGTATTATGTAAGTGAG
 
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rJMSF007J02+          AGGAAAGTC                                                   
rJMSF012E21+          AGGAAAGTCCTAAACTCTTTATAACCAAGTATTACCATGATTTATGTTGTTGCAGCTATT
                      ____________________________________________________________
consensus             AGGAAAGTCCTAAACTCTTTATAACCAAGTATTACCATGATTTATGTTGTTGCAGCTATT