Contig 012550:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF012D11Sequence469012550 (2)ref|XP_009613166.1|7e-33PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At3g4782012550 (2)ref|XP_009791081.1|6e-156PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At3g4

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF012D11-                                                          GAAGACTAAGGGA
                      ____________________________________________________________
consensus                                                            GAAGACTAAGGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF012D11-           GGGAGAGAGAAACCTTTTCTTGATTCCTTCTCAAATGGCTCTAAGAGTCCTCTCCTCCTC
                      ____________________________________________________________
consensus             GGGAGAGAGAAACCTTTTCTTGATTCCTTCTCAAATGGCTCTAAGAGTCCTCTCCTCCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF012D11-           CTCCTCTTGTTCTTCTCAACCCATTTTCTTGTCCCAGAGAAGCGCTATATCTGCGATTCC
                      ____________________________________________________________
consensus             CTCCTCTTGTTCTTCTCAACCCATTTTCTTGTCCCAGAGAAGCGCTATATCTGCGATTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF012D11-           TTCCGCCGTCGCCATACCCAATGGTGGAAACAAGGCCATCTTGTTGAAATCATCCATTTG
                      ____________________________________________________________
consensus             TTCCGCCGTCGCCATACCCAATGGTGGAAACAAGGCCATCTTGTTGAAATCATCCATTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF012D11-           GGGGCTTCCAAGTAGAGGAAGAAGAGTAAAGGGCACCGAGAGAATTTTCAAGAATGGCAG
                      ____________________________________________________________
consensus             GGGGCTTCCAAGTAGAGGAAGAAGAGTAAAGGGCACCGAGAGAATTTTCAAGAATGGCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF012D11-           CAAAGTGGCATGCTTTGCAGCGGCCGAGGCATCAGCTGTTCCACAGGCACTGCTCTTTGA
rJMSF012D11+                                                                    GA
                      ____________________________________________________________
consensus             CAAAGTGGCATGCTTTGCAGCGGCCGAGGCATCAGCTGTTCCACAGGCACTGCTCTTTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF012D11-           CTGTGATGGAGTGCTTGTTGACACCGAGAAAGATGGCCACCGTATTTCCTTCAATGATAC
rJMSF012D11+          CTGTGATGGAGTGCTTGTTGACACCGAGAAAGATGGCCACCGTATTTCCTTCAATGATAC
                      ____________________________________________________________
consensus             CTGTGATGGAGTGCTTGTTGACACCGAGAAAGATGGCCACCGTATTTCCTTCAATGATAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF012D11-           CTTTGCTGAGAAGGAATTGGGTGTAACTTGGGATGTGGATTTGTATGGTGAATTGCTCAA
rJMSF012D11+          CTTTGCTGAGAAGGAATTGGGTGTAACTTGGGATGTGGATTTGTATGGTGAATTGCTCAA
                      ____________________________________________________________
consensus             CTTTGCTGAGAAGGAATTGGGTGTAACTTGGGATGTGGATTTGTATGGTGAATTGCTCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF012D11-           AATTGGAGGCGGTAAAGAAAGGATGACTGCTTACTT                        
rJMSF012D11+          AATTGGAGGCGGTAAAGAAAGGATGACTGCTTACTTTAACAAAGTGGGTTGGCCAGAGAA
                      ____________________________________________________________
consensus             AATTGGAGGCGGTAAAGAAAGGATGACTGCTTACTTTAACAAAGTGGGTTGGCCAGAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF012D11+          TGCACCAAAGAGCGACGATGAAAGAAAAGAGTTTATCAAATCACTTCACAAACGCAAGAC
                      ____________________________________________________________
consensus             TGCACCAAAGAGCGACGATGAAAGAAAAGAGTTTATCAAATCACTTCACAAACGCAAGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF012D11+          GGATTTATTCATGGTCCTTATCGAGAAAAAGTTGTTACCACTTCGGCCTGGCGTTGCAAA
                      ____________________________________________________________
consensus             GGATTTATTCATGGTCCTTATCGAGAAAAAGTTGTTACCACTTCGGCCTGGCGTTGCAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF012D11+          GCTGATTGATCAAGCTCTGGAAAAAGGAGTTAAAGTTGCTGTATGCAGCACTTCGAATGA
                      ____________________________________________________________
consensus             GCTGATTGATCAAGCTCTGGAAAAAGGAGTTAAAGTTGCTGTATGCAGCACTTCGAATGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF012D11+          GAAGGCGGTCTCTGCCATAGTTTCATGCTTGTTAGGACCCGAACGAGCAGAAAAGATCCA
                      ____________________________________________________________
consensus             GAAGGCGGTCTCTGCCATAGTTTCATGCTTGTTAGGACCCGAACGAGCAGAAAAGATCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF012D11+          GATATATGCAGGAGATGTGGTTCCTCGTAAGAAGCCTGATCCGGCCATCTATCTGCTAGC
                      ____________________________________________________________
consensus             GATATATGCAGGAGATGTGGTTCCTCGTAAGAAGCCTGATCCGGCCATCTATCTGCTAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF012D11+          AGCGGACACTTTGGGTGTTGATCCTTCGAGGTGTGTAGTAGTAGAAGACAGTGCCATCGG
                      ____________________________________________________________
consensus             AGCGGACACTTTGGGTGTTGATCCTTCGAGGTGTGTAGTAGTAGAAGACAGTGCCATCGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF012D11+          TCTTGCAGCTGCCAAAGCTGCTGGAATGAAGTGCATTGTGACAAAGAGCGGGTACACGGC
                      ____________________________________________________________
consensus             TCTTGCAGCTGCCAAAGCTGCTGGAATGAAGTGCATTGTGACAAAGAGCGGGTACACGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF012D11+          AGATGAAGATTTCTTGAATGCCGATGCAGTTTTCGACTGCATTGGAGACCCTCCAGAGGA
                      ____________________________________________________________
consensus             AGATGAAGATTTCTTGAATGCCGATGCAGTTTTCGACTGCATTGGAGACCCTCCAGAGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF012D11+          ACGATTCGACTTGCCATTCTGCGGGACCCTTTTGGAAAAGCAGTATGTTAGTTAGTTAAT
                      ____________________________________________________________
consensus             ACGATTCGACTTGCCATTCTGCGGGACCCTTTTGGAAAAGCAGTATGTTAGTTAGTTAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF012D11+          CTGTGTGTACAAGTACAACTTCACCTTATTATCTACAAATGTTTTGCTGTTCAGCCAGTG
                      ____________________________________________________________
consensus             CTGTGTGTACAAGTACAACTTCACCTTATTATCTACAAATGTTTTGCTGTTCAGCCAGTG