Contig 012547:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF004K18Sequence448012547 (4)ref|XP_006364898.1|9e-49PREDICTED: zinc finger Ran-binding domain-containing protein 2-like isoform X3
JMSF004K20Sequence214019900433012547 (4)ref|XP_006364896.1|1e-24PREDICTED: zinc finger Ran-binding domain-containing protein 2-like isoform X1
JMSF011I14Sequence477012547 (4)ref|XP_006364896.1|1e-61PREDICTED: zinc finger Ran-binding domain-containing protein 2-like isoform X1 706012547 (4)ref|XP_006364896.1|5e-64PREDICTED: zinc finger Ran-binding domain-containing protein 2-like isoform X1

Alignment

This contig is upended


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JMSF004K18-                                                                     AC
JMSF011I14-                                                                    TAC
rJMSF011I14+                                                                    AC
                      ____________________________________________________________
consensus                                                                      TAC
 
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JMSF004K18-           CATCCATCTTCAGCTAACAATTCTCTTCAGTTTCAATTACACTTTGTATATCTCAACTCT
JMSF011I14-           CATCCATCTTCAGCTAACAATTCTCTTCAGTTTCAATTACACTTTGTATATCTCAACTCT
rJMSF011I14+          CATCCATCTTCAGCTAACAATTCTCTTCAGTTTCAATTACACTTTGTATATCTCAACTCT
                      ____________________________________________________________
consensus             CATCCATCTTCAGCTAACAATTCTCTTCAGTTTCAATTACACTTTGTATATCTCAACTCT
 
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JMSF004K18-           GCAACTCGATCGCTTTTCTGATCTTTCGTCTTCTAGAAAATGAGCCGGGAAGGGGATTGG
JMSF011I14-           GCAACTCGATCGCTTTTCTGATCTTTCGTCTTCTAGAAAATGAGCCGGGAAGGGGATTGG
rJMSF011I14+          GCAACTCGATCGCTTTTCTGATCTTTCGTCTTCTAGAAAATGAGCCGGGAAGGGGATTGG
                      ____________________________________________________________
consensus             GCAACTCGATCGCTTTTCTGATCTTTCGTCTTCTAGAAAATGAGCCGGGAAGGGGATTGG
 
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JMSF004K18-           ATGTGTGCTGCATGCCAACACCTTAACTTCAAGAAGCGCGATGCATGCCAACGATGCAGC
JMSF011I14-           ATGTGTGCTGCATGCCAACACCTTAACTTCAAGAAGCGCGATGCATGCCAACGATGCAGC
rJMSF011I14+          ATGTGTGCTGCATGCCAACACCTTAACTTCAAGAAGCGCGATGCATGCCAACGATGCAGC
                      ____________________________________________________________
consensus             ATGTGTGCTGCATGCCAACACCTTAACTTCAAGAAGCGCGATGCATGCCAACGATGCAGC
 
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JMSF004K18-           TGCCCGAAGTATGCCTCCGCGTCTGATGTGGCCTTATACGGGCTAAATAAATCGGAAGTG
JMSF011I14-           TGCCCGAAGTATGCCTCCGCGTCTGATGTGGCCTTATACGGGCTAAATAAATCGGAAGTG
rJMSF011I14+          TGCCCGAAGTATGCCTCCGCGTCTGATGTGGCCTTATACGGGCTAAATAAATCGGAAGTG
                      ____________________________________________________________
consensus             TGCCCGAAGTATGCCTCCGCGTCTGATGTGGCCTTATACGGGCTAAATAAATCGGAAGTG
 
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JMSF004K18-           TTGGCTGGGGACTGGTATTGCACCGGCATGAACTGCGGGGTTCACAACTATGCGAGCCGA
JMSF011I14-           TTGGCTGGGGACTGGTATTGCACCGGCATGAACTGCGGGGTTCACAACTATGCGAGCCGA
rJMSF004K20+                                  GGCATGAACTGCGGGGTTCACAACTATGCGAGCCGA
rJMSF011I14+          TTGGCTGGGGACTGGTATTGCACCGGCATGAACTGCGGGGTTCACAACTATGCGAGCCGA
                      ____________________________________________________________
consensus             TTGGCTGGGGACTGGTATTGCACCGGCATGAACTGCGGGGTTCACAACTATGCGAGCCGA
 
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JMSF004K18-           ACGACTTGCTTCAGATGTGGCGCCTCGAAAGTGGATTATTATGGCTATGCTGCTGCAGCA
JMSF011I14-           ACGACTTGCTTCAGATGTGGCGCCTCGAAAGTGGATTATTATGGCTATGCTGCTGCAGCA
rJMSF004K20+          ACGACTTGCTTCAGATGTGGCGCCTCGAAAGTGGATTATTATGGCTATGCTGCTGCAGCA
rJMSF011I14+          ACGACTTGCTTCAGATGTGGCGCCTCGAAAGTGGATTATTATGGCTATGCTGCTGCAGCA
                      ____________________________________________________________
consensus             ACGACTTGCTTCAGATGTGGCGCCTCGAAAGTGGATTATTATGGCTATGCTGCTGCAGCA
 
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JMSF004K18-           TATGATGCAAATGCTGTTCCTGGTTGGAAATCTGGTGACTGGATATGCAACAGATATGGN
JMSF011I14-           TATGATGCAAATGCTGTTCCTGGTTGGAAATCTGGTGACTGGATATGCAACAGATATGG-
rJMSF004K20+          TATGATGCAAATGCTGTTCCTGGTTGGAAATCTGGTGACTGGATATGCAACAGATATGG-
rJMSF011I14+          TATGATGCAAATGCTGTTCCTGGTTGGAAATCTGGTGACTGGATATGCAACAGATATGG-
                      ____________________________________________________________
consensus             TATGATGCAAATGCTGTTCCTGGTTGGAAATCTGGTGACTGGATATGCAACAGATATGG-
 
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JMSF004K18-           ATGTGGTACTCACAACTATGCCAGT                                   
JMSF011I14-           ATGTGGTACTCACAACTATGCCAGTAGAACAGAATGCTACAAATGCATGACGCCT     
rJMSF004K20+          ATGTGGTACTCACAACTATGCCAGTAGAACAGAATGCTACAAATGCAAGACGCCTCGGGA
rJMSF011I14+          ATGTGGTACTCACAACTATGCCAGTAGAACAGAATGCTACAAATGCATGACGCCTCGGGA
                      ____________________________________________________________
consensus             ATGTGGTACTCACAACTATGCCAGTAGAACAGAATGCTACAAATGCATGACGCCTCGGGA
 
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rJMSF004K20+          TTACGGTTTTATTCTCATCAGCACAAGACCTGTGATGAGAAAGTGAGTCAAGGAAGAGAT
rJMSF011I14+          TTAC----------------GCACAAGACCTGTGATGAGAAAGTGAGTCAAGGAAGAGAT
                      ____________________________________________________________
consensus             TTACGGTTTTATTCTCATCAGCACAAGACCTGTGATGAGAAAGTGAGTCAAGGAAGAGAT
 
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rJMSF004K20+          CAGAACAGCATTCTATTCCCAGTTCATATCCAAGAATTGCTGTTTCTTTAGTTCTTATTA
rJMSF011I14+          CAGAACAGCATTCTATTCCCAGTTCATATCCAAGAATTGCTGTTTCTTTAGTTCTTATTA
                      ____________________________________________________________
consensus             CAGAACAGCATTCTATTCCCAGTTCATATCCAAGAATTGCTGTTTCTTTAGTTCTTATTA
 
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rJMSF004K20+          CCACTCTCTGTGTTTTCTTAGTCCAATAATTAATATTATCCAATTTTCATTAGCATTGCT
rJMSF011I14+          CCACTCTCTGTGTTTTCTTAGTCCAATAATTAATATTATCCAATTTTCATTAGCATTGCT
                      ____________________________________________________________
consensus             CCACTCTCTGTGTTTTCTTAGTCCAATAATTAATATTATCCAATTTTCATTAGCATTGCT
 
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rJMSF004K20+          CTTTGGTTAGCCA-CAATGGGTTTCTAACTTCATTTTTG                     
rJMSF011I14+          CTTTGGTTAGCCACCAATGGGTTTCTAACTTCATTTTTGTATGATGCCAAGTGTTCATAC
                      ____________________________________________________________
consensus             CTTTGGTTAGCCACCAATGGGTTTCTAACTTCATTTTTGTATGATGCCAAGTGTTCATAC