Contig 012546:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF048P05-                 GAAAAACTACCAAAAAAGAAAAGAGGGAATCTTTCTTTTTGTTTGTCCATGGAC
                      ____________________________________________________________
consensus                   GAAAAACTACCAAAAAAGAAAAGAGGGAATCTTTCTTTTTGTTTGTCCATGGAC
 
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JMSF048P05-           TTTGATCTGAAGCAATGGAGAAACCAGGAGGAGTCAGAAGCAAAGGTACCAAGACTTGTG
JMCP009D03+                                           GTCAGAAGCAAAGGTACCAAGACTTGTG
                      ____________________________________________________________
consensus             TTTGATCTGAAGCAATGGAGAAACCAGGAGGAGTCAGAAGCAAAGGTACCAAGACTTGTG
 
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JMSF048P05-           CTTGATCTCCACTCCACCACTACCACAGCTAGTCATGGGGGTGGGGGTGGGGGGTCATCT
JMCP009D03+           CTTGATCTCCACTCCACCACTACCACAGCTAGTCATGGGGGTGGGGGTGGGGGGTCATCT
                      ____________________________________________________________
consensus             CTTGATCTCCACTCCACCACTACCACAGCTAGTCATGGGGGTGGGGGTGGGGGGTCATCT
 
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JMSF048P05-           TCCTCTGCACTTCCATTGTTTGTCTCTGAACCCC                          
JMCP009D03+           TCCTCTGCACTTCCATTGTTTGTCTCTGAACCCCCCACCAGCAAGCTGTCAGCATTCTCT
                      ____________________________________________________________
consensus             TCCTCTGCACTTCCATTGTTTGTCTCTGAACCCCCCACCAGCAAGCTGTCAGCATTCTCT
 
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JMCP009D03+           TCTGATTCCACACCCACTGCCACCACCAAATTTCCCAGGATGGGTGGAAGTTACTTCAGC
JMSF011H13-                                                                    AGC
                      ____________________________________________________________
consensus             TCTGATTCCACACCCACTGCCACCACCAAATTTCCCAGGATGGGTGGAAGTTACTTCAGC
 
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JMCP009D03+           TTGGGGCAGTGGCAGGAGCTTGAACTGCAGGCTTTGATCTTCAGACACATGATTGCTGGG
JMSF011H13-           TTGGGGCAGTGGCAGGAGCTTGAACTGCAGGCTTTGATCTTCAGACACATGATTGCTGGG
                      ____________________________________________________________
consensus             TTGGGGCAGTGGCAGGAGCTTGAACTGCAGGCTTTGATCTTCAGACACATGATTGCTGGG
 
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JMCP009D03+           GCACCTGTTCCACCTGAGCTTCTCCACCTGGTTAAAAAGAGCCCCTTCAACTCTGCTCCT
JMSF011H13-           GCACCTGTTCCACCTGAGCTTCTCCACCTGGTTAAAAAGAGCCTCTTCAACTCTGCTCCT
                      ____________________________________________________________
consensus             GCACCTGTTCCACCTGAGCTTCTCCACCTGGTTAAAAAGAGCCTCTTCAACTCTGCTCCT
 
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JMCP009D03+           TACTATTTCCCTCACCCTCTTCACCAATATCCCCATTATCACCCTGCTTCAGCACCTT--
JMSF011H13-           TACTATTTCCCTCACCCTCTTCACCAATATCCCCATTATCACCCAGCTTCAGCACCTTTG
                      ____________________________________________________________
consensus             TACTATTTCCCTCACCCTCTTCACCAATATCCCCATTATCACCCTGCTTCAGCACCTTTG
 
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JMCP009D03+           ---------GGTACTGGGGGAGAGCGGCGATGGATCCGGAGCCGGGTCGGTGCCGGAGGA
JMSF011H13-           ATGCAAGCAGGGTACTGGGGAGAGCGGCGATGGATCCGGAGCCGGGTCGGTGCCGGAGGA
                      ____________________________________________________________
consensus             ATGCAAGCAGGTTCTTGGGGAGAGCGGCGATGGATCCGGAGCCGGGTCGGTGCCGGAGGA
 
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JMCP009D03+           CCGACGGGAAGAAGTGGAGGTGCTCGAGGGACGTGGTGGCGGGTCAGAAGTATTGTGAGC
JMSF011H13-           CCGACGGGAAGAAGTGGAGGTGCTCGAGGGACGTGGTGGCGGGTCAGAAGTATTGTGAGC
rJMSF011H13+                   AGAAGTGGAGGTGCTCGAGGGACGTNGTGGCGGGTCAGAAGTATTGTGAGC
                      ____________________________________________________________
consensus             CCGACGGGAAGAAGTGGAGGTGCTCGAGGGACGTGGTGGCGGGTCAGAAGTATTGTGAGC
 
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JMCP009D03+           GCCACATGCACCGTGGCCGCAACCGTTCAAGAAAGCCTGTGGAAATTCCCACGCCAACTC
JMSF011H13-           GCCACATGCACCGTGGCCGCAACCGTTCAAGAAAGCCTGTGGAAATTCCCACGCCAACTC
rJMSF048P05+                                   TTCAAGAAAGCCTGTGGAAATTCCCACGCCAACTC
rJMSF011H13+          GCCACATGCACCGTGGCCGCAACCGTTCAAGAAAGCCTGTGGAAATTCCCACGCCAACTC
                      ____________________________________________________________
consensus             GCCACATGCACCGTGGCCGCAACCGTTCAAGAAAGCCTGTGGAAATTCCCACGCCAACTC
 
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JMCP009D03+           CGCCTACTGCCGCCGGTGGCCCCACGGCGGATGCTCAGCCCTTGTCCGCCG         
JMSF011H13-           CGCCTACTGCCGCCGGTGGCCCCACGGCGGATGCTCAGCCCTTGTCCGCCGTGCCCGGCC
rJMSF048P05+          CGCCTACTGCCGCCGGTGGCCCCACGGCGGATGCTCAGCCCTTGTCCGCCGTGCCCGGCC
rJMSF011H13+          CGCCTACTGCCGCCGGTGGCCCCACGGCGGATGCTCAGCCCTTGTCCGCCGTGCCCGGCC
                      ____________________________________________________________
consensus             CGCCTACTGCCGCCGGTGGCCCCACGGCGGATGCTCAGCCCTTGTCCGCCGTGCCCGGCC
 
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JMSF011H13-           GTGATGCCCCCCCTCACTTCACTCTCTCCGCCGCTACTGCTCCTCCCTCGTCTTCCATTG
rJMSF048P05+          GTGATGCCCCCCCTCACTTCACTCTCTCCGCCGCTACTGTTCCTCCCTCGTCTTCCATTG
rJMSF012H13+                                             ACTGCTCCTCCCTCGTCTTCCATTG
rJMSF011H13+          GTGATGCCCCCCCTCACTTCACTCTCTCCGCCGCTACTGCTCCTCCCTCGTCTTCCATTG
                      ____________________________________________________________
consensus             GTGATGCCCCCCCTCACTTCACTCTCTCCGCCGCTACTGCTCCTCCCTCGTCTTCCATTG
 
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JMSF011H13-           ATCTCTTTCA                                                  
rJMSF048P05+          ATCTCTTTCACCTCAGTCAAAGGCATCATGGAGAGCCCATTATGGAAAGCAACGGCCCAC
rJMSF012H13+          ATCTCTTTCACCTCAGTCAAAGGCATCATGGAGAGCCCATTATGGAAAGCAACGGCCCAC
rJMSF011H13+          ATCTCTTTCACCTCAGTCAAAGGCATCATGGAGAGCCCATTATGGAAAGCAACGGCCCAC
                      ____________________________________________________________
consensus             ATCTCTTTCACCTCAGTCAAAGGCATCATGGAGAGCCCATTATGGAAAGCAACGGCCCAC
 
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rJMSF048P05+          TTGAGGCCCAAAAGGATGGGCCGGCCGGCGGACAGACACTCCGGCATTTCTTCGACGACT
rJMSF012H13+          TTGAGGCCCAAAAGGATGGGCCGGCCGGCGGACAGACACTCCGGCATTTCTTCGACGACT
rJMSF011H13+          TTGAGGCCCAAAAGGATGGGCCGGCCGGCGGACAGACACTCCGGCATTTCTTCGACGACT
                      ____________________________________________________________
consensus             TTGAGGCCCAAAAGGATGGGCCGGCCGGCGGACAGACACTCCGGCATTTCTTCGACGACT
 
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rJMSF048P05+          GGCCCAGACCACTTGAGGAAAATGAGAGCTCCTCCGCCGTGGCTTCCGCCACCAACCTCT
rJMSF012H13+          GGCCCAGACCACTTGAGGAAAATGAGAGCTCCTCCGCCGTGGCTTCCGCCACCAACCTCT
rJMSF011H13+          GGCCCAGACCACTTGAGGAAAATGAGAGCTCCTCCGCCGTGGCTTCCGCCACCAACCTCT
                      ____________________________________________________________
consensus             GGCCCAGACCACTTGAGGAAAATGAGAGCTCCTCCGCCGTGGCTTCCGCCACCAACCTCT
 
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rJMSF048P05+          CCATATCCATCCCCGGAAACGCTTCTTCCGATTTCTCACTGAAGCTCGCCACCGGGCCTC
rJMSF012H13+          CCATATCCATCCCCGGAAACGCTTCTTCCGATTTCTCACTGAAGCTCGCCACCGGGCCTC
rJMSF011H13+          CCATATCCATCCCCGGAAACGCTTCTTCCGATTTCTCACTGAAGCTCGCCACCGGGCCTC
                      ____________________________________________________________
consensus             CCATATCCATCCCCGGAAACGCTTCTTCCGATTTCTCACTGAAGCTCGCCACCGGGCCTC
 
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rJMSF048P05+          CGCTGGGGGGCAACATGGAACGGACAACCGCCGCGTGGGGGACGAGCCACCACCAGGTCC
rJMSF012H13+          CGCTGGGGGGCAACATGGAACGGACAACCGCCGCGTGGGGGACGAGCCACCACCAGGTCC
rJMSF011H13+          CGCTGGGGGGCAACATGGAACGGACAACCGCCGCGTGGGGGACGAGCCACCACCAGGTCC
                      ____________________________________________________________
consensus             CGCTGGGGGGCAACATGGAACGGACAACCGCCGCGTGGGGGACGAGCCACCACCAGGTCC
 
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rJMSF048P05+          AGGTGGGTTCCGCCGTGGGCGGGCCGCTGGCGGAGGCTTTGAGATCTTCCACGTCCAACT
rJMSF012H13+          AGGTGGGTTCCGCCGTGGGCGGGCCGCTGGCGGAGGCTTTGAGATCTTCCACGTCCAACT
rJMSF011H13+          AGGTGGGTTCCGCCGTGGGCGGGCCGCTGGCGGAGGCTTTGAGATCTTCCACGTCCAACT
                      ____________________________________________________________
consensus             AGGTGGGTTCCGCCGTGGGCGGGCCGCTGGCGGAGGCTTTGAGATCTTCCACGTCCAACT
 
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rJMSF048P05+          CCTCGCCCACCAGCGTTTTGCACCAGTTGCAGCGTAACTCAACAACGTCGGAGACTAGTT
rJMSF012H13+          CCTCACCCACCAGCGTTTTGCACCAGTTGCAGCGTAACTCAACAACGTCGGAGACTAGTT
rJMSF011H13+          CCTCACCCACCAGCGTTTTGCACCAGTTGCAGCGTAACTCAACAACGTCGGAGACTAGTT
                      ____________________________________________________________
consensus             CCTCACCCACCAGCGTTTTGCACCAGTTGCAGCGTAACTCAACAACGTCGGAGACTAGTT
 
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rJMSF048P05+          TTATCACCAGTTGAAGAAGAAGAATCATTATATTGTTTTCTTCAAAAATGATGTATGTCT
rJMSF012H13+          TTATCACCAGTTGAAGAAGAAGAATCATTATATTGTTTTCTTCAAAAATGATGTATGTCT
rJMSF011H13+          TTATCACCAGTTGAAGAAGAAGAATCATTATATTGTTTTCTTCAAAAATGATGTATGTCT
                      ____________________________________________________________
consensus             TTATCACCAGTTGAAGAAGAAGAATCATTATATTGTTTTCTTCAAAAATGATGTATGTCT
 
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rJMSF048P05+          AGGTTGTCTTATTTAAATGTCGGCTGTACAAATTGCATGCATGGAGTGTGTAATGCT   
rJMSF012H13+          AGGTTGTCTTATTTAAATGTCGGCTGTACAAATTGCATGCATGGAGTGTGTAATGCT   
rJMSF011H13+          AGGTTGTCTTATTTAAATGTCGGCTGTACAAATTGCATGCATGGAGTGTGTAATGCTTTA
                      ____________________________________________________________
consensus             AGGTTGTCTTATTTAAATGTCGGCTGTACAAATTGCATGCATGGAGTGTGTAATGCTTTA