Contig 012545:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF008H17Sequence282012545 (8)
JMFF011A17Sequence576013276 (6)ref|XP_006340083.1|3e-68PREDICTED: signal recognition particle subunit SRP72-like [Solanum tuberosum]702012545 (8)ref|XP_009607855.1|4e-52PREDICTED: signal recognition particle subunit SRP72-like [Nicotiana tomentosif
JMFF016I17Sequence540013276 (6)ref|XP_011080276.1|4e-75PREDICTED: signal recognition particle subunit SRP72-like [Sesamum indicum]786012545 (8)ref|XP_009607855.1|1e-71PREDICTED: signal recognition particle subunit SRP72-like [Nicotiana tomentosif
JMFN017M15Sequence626012545 (8)ref|XP_009769400.1|1e-43PREDICTED: signal recognition particle subunit SRP72-like [Nicotiana sylvestris
JMSF005N21Sequence299013276 (6)ref|XP_006340083.1|2e-27PREDICTED: signal recognition particle subunit SRP72-like [Solanum tuberosum]420012545 (8)ref|XP_004250878.1|4e-26PREDICTED: signal recognition particle subunit SRP72 [Solanum lycopersicum]
JMSF008G04Sequence374013276 (6)ref|XP_009789058.1|6e-65PREDICTED: LOW QUALITY PROTEIN: signal recognition particle subunit SRP72-like 789012545 (8)ref|XP_009607855.1|3e-87PREDICTED: signal recognition particle subunit SRP72-like [Nicotiana tomentosif
JMSF011G24Sequence230013276 (6)ref|XP_006340083.1|6e-13PREDICTED: signal recognition particle subunit SRP72-like [Solanum tuberosum]786012545 (8)ref|XP_009607855.1|6e-64PREDICTED: signal recognition particle subunit SRP72-like [Nicotiana tomentosif
JMSF050B04Sequence647013276 (6)ref|XP_011080276.1|3e-99PREDICTED: signal recognition particle subunit SRP72-like [Sesamum indicum]773012545 (8)ref|XP_009607855.1|2e-71PREDICTED: signal recognition particle subunit SRP72-like [Nicotiana tomentosif

Alignment

This contig is upended


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rJMSF008G04+                                GTGTTTAATGCTGCCATTGAATGGTGGTCAAATGCCAT
                      ____________________________________________________________
consensus                                   GTGTTTAATGCTGCCATTGAATGGTGGTCAAATGCCAT
 
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rJMSF008G04+          GACTGAAGACAATAAGCTTGATACCATCATGCAAGAGGCTGCTGCATTCAAACTCAGACA
rJMSF050B04+                        AGCTTGATACCATCATGCAAGAGGCTGCTGCATTCAAANTCAGACA
rJMFF016I17+                                  CATCATGCAAGAGGCTGCTGCATTCAAACTCAGACA
rJMSF011G24+                                                               TCAGACA
                      ____________________________________________________________
consensus             GACTGAAGACAATAAGCTTGATACCATCATGCAAGAGGCTGCTGCATTCAAACTCAGACA
 
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rJMSF008G04+          TGGGCGGAAGGAAGAGGCTGCCCGGCTATATGAGAAGCTGGTTAAAAGCCACGGAAGTAT
rJMSF050B04+          TGGGCGGAAGGAAGAGGCTGCCCGGCTATATGAGAAGCTGGTTAAAAGCCACGGAAGTAT
rJMFF011A17+                                                          CCACGGAAGTAT
rJMFF016I17+          TGGGCGGAAGGAAGAGGCTGCCCGGCTATATGAGAAGCTGGTTAAAAGCCACGGAAGTAT
rJMSF011G24+          TGGGCGGAAGGAAGAGGCTGCCCGGCTATATGAGAAGCTGGTTAAAAGCCACGGAAGTAT
                      ____________________________________________________________
consensus             TGGGCGGAAGGAAGAGGCTGCCCGGCTATATGAGAAGCTGGTTAAAAGCCACGGAAGTAT
 
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rJMSF008G04+          AGAGGCTTTAGTCGGGTTGATCCAGACAACTGCTCAATCTGATATTGAAAAAGCAGAAGC
rJMSF050B04+          AGAGGCTTTAGTCGGGTTGATCCAGACAACTGCTCAATCTGATATTGAAAAAGCAGAAGC
rJMFF011A17+          AGAGGCTTTAGTCGGGTTGATCCAGACAACTGNTCAATCTGATATTGAAAAAGCAGAAGC
rJMFF016I17+          AGAGGCTTTAGTCGGGTTGATCCAGACAACTGCTCAATCTGATATTGAAAAAGCAGAAGC
JMFN017M15-                                     CAACTGCTCAATCTGATATTGAAAAAGCAGAAGC
rJMSF011G24+          AGAGGCTTTAGTCGGGNTGATCCAGACAACTGCTCAATCTGATATTGAAAAAGCAGAAGC
                      ____________________________________________________________
consensus             AGAGGCTTTAGTCGGGTTGATCCAGACAACTGCTCAATCTGATATTGAAAAAGCAGAAGC
 
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rJMSF008G04+          TTACGAAAAGCAGCTGAAACCACTCCCTGGTTTGAAGGCGGTTGATATTGATAGTTTGGA
rJMSF050B04+          TTACGAAAAGCAGCTGAAACCACTCCCTGGTTTGAAGGCGGTTGATATTGGTAGTTTGGA
rJMFF011A17+          TTACGAAAAGCAGCTGAAACCACTCCCTGGTTTGAAGGCGGTTGATATTGATAGTTTGGA
rJMFF016I17+          TTACGAAAAGCAGCTGAAACCACTCCCTGGTTTGAAGGCGGTTGATATTGATAGTTTGGA
JMFN017M15-           TTACGAAAAGCAGCTGAAACCACTCCCTGGTTTGAAGGCGGTTGATATTGATAGTTTGGA
rJMSF011G24+          TTACGAAAAGCAGCTGAAACCACTCCCTGGTTTGAAGGCGGTTGATATTGATAGTTTGGA
                      ____________________________________________________________
consensus             TTACGAAAAGCAGCTGAAACCACTCCCTGGTTTGAAGGCGGTTGATATTGATAGTTTGGA
 
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rJMSF008G04+          GAAAACTTCTGGTGCCAAGGGTGTTGGTAGTGGTCCTACTCTTAGTGTAGCCGAAGCATA
rJMSF050B04+          GAAAACTTCTGGTGCCAAGGGTGTTGGTAGTGGTCCTACTCTTAGTGTAGCCGAAGCATA
rJMFF011A17+          GAAAACTTCTGGTGCCAAGGGTGTTGGTAGTGGTCCTACTCTTAGTGTAGCCGAAGCATA
rJMFF016I17+          GAAAACTTCTGGTGCCAAGGGTGTTGGTAGTGGTCCTACTCTTAGTGTAGCCAAAGCATA
JMFN017M15-           GAAAACTTCTGGTGCCAAGGGTGTTGGTAGTGGTCCTACTCTTAGTGTAGCCGAAGCATA
rJMSF011G24+          GAAAACTTCTGGTGCCAAGGGTGTTGGTAGTGGTCCTACTCTTAGTGTAGCCGAAGCATA
                      ____________________________________________________________
consensus             GAAAACTTCTGGTGCCAAGGGTGTTGGTAGTGGTCCTACTCTTAGTGTAGCCGAAGCATA
 
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rJMSF008G04+          TGAAACCAAGAGCAAGGAGAAACCAAAGAAGAAGAGAAAGAGAAAGCCTAGATACCCTAA
rJMSF050B04+          TGAAACCAAGAGCAAGGAGAAACCAAAGAAGAAGAGAAAGAGAAAGCCTAGATACCCTAA
rJMFF011A17+          TGAAACCAAGAGCAAGGAGAAACCAAAGAAGAAGAGAAAGAGAAAGCCTAGATACCCTAA
rJMSF005N21+                                                                   TAA
rJMFF016I17+          TGAAACCAAGAGCAAGGAGAAACCAAAGAAGAAGAGAAAGAGAAAGCCTAGATACCCTAA
JMFN017M15-           TGAAACCAAGAGCAAGGAGAAACCAAAGAAGAAGAGAAAGAGAAAGCCTAGATACCCTAA
rJMSF011G24+          TGAAACCAAGAGCAAGGAGAAACCAAAGAAGAAGAGAAAGAGAAAGCCTAGATACCCTAA
                      ____________________________________________________________
consensus             TGAAACCAAGAGCAAGGAGAAACCAAAGAAGAAGAGAAAGAGAAAGCCTAGATACCCTAA
 
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rJMSF008G04+          AGGATTTGATCCCGCAAATCCAGGTCCCCCACCAGATCCAGAGCGCTGGCTTCCAAAGAG
rJMSF050B04+          AGGATTTGATCCCGCAAATCCAGGTCCCCCACCAGATCCAGAGCGCTGGCTTCCAAAGAG
rJMFF011A17+          AGGATTTGATCCCGCAAATCCAGGTCCCCCACCAGATCCAGAGCGCTGGCTTCCAAAGAG
rJMSF005N21+          AGGATTTGATCCCGCAAATCCAGGTCNCCCACCAGATCCAGAGCGCTGGCNTNCAAAGAG
rJMFF016I17+          AGGATTTGATCCCGCAAATCCAGGTCCCCCACCAGATCCAGAGCGCTGGCTTCCAAAGAG
JMFN017M15-           AGGATTTGATCCCGCAAATCCAGGTCCCCCACCAGATCCAGAGCGCTGGCTTCCAAAGAG
rJMSF011G24+          AGGATTTGATCCCGCAAATCCAGGTCCCCCACCAGATCCAGAGCGCTGGCTTCCAAAGAG
                      ____________________________________________________________
consensus             AGGATTTGATCCCGCAAATCCAGGTCCCCCACCAGATCCAGAGCGCTGGCTTCCAAAGAG
 
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rJMFF008H17+                                          ACAAAAGAGCGGCNCAAATAAGAGGCTC
rJMSF008G04+          AGAGAGGTCCAGCTATAGACCGAAGAGAAAGGACAAAAGAGCGGCACAAATAAGAGGCTC
rJMSF050B04+          AGAGAGGTCCAGCTATAGACCGAAGAGAAAGGACAAAAGAGCGGCACAAATAAGAGGCTC
rJMFF011A17+          AGAGAGGTCCAGCTATAGACCGAAGAGAAAGGACAAAAGAGCGGCACAAATAAGAGGCTC
rJMSF005N21+          AGAGAGGTCCAGCTATAGACCGAAGAGAAAGGACAAAAGAGCGGCACAAATAAGAGGCTC
rJMFF016I17+          AGAGAGGTCCAGCTATAGACCGAAGAGAAAGGACAAAAGAGCGGCACAAATAAGAGGCTC
JMFN017M15-           AGAGAGGTCCAGCTATAGACCGAAGAGAAAGGACAAAAGAGCGGCACAAATAAGAGGCTC
rJMSF011G24+          AGAGAGGTCCAGCTATAGACCGAAGAGAAAGGACAAAAGAGCGGCACAAATAAGAGGCTC
                      ____________________________________________________________
consensus             AGAGAGGTCCAGCTATAGACCGAAGAGAAAGGACAAAAGAGCGGCACAAATAAGAGGCTC
 
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rJMFF008H17+          NCNAGGNGCANNGGCCAAAGAAGCTTCCAGTAGCAGCACATNGAANCCAAATCCAACTGC
rJMSF008G04+          ACAAGGCGCAGTGGCCAAAGAAGCTTCCAGTAGCAGCACATCGAAACCAAATCCAACTGC
rJMSF050B04+          ACAAGGCGCAGTGGCCAAAGAAGCTTCCAGTAGCAGCACATCGAAGCCAAATCCAACTGC
rJMFF011A17+          ACAAGGCGCAGTGGCCAAAGAAGCTTCCAGTAGCAGCACATCGAAACCAAATCCAACTGC
rJMSF005N21+          ACAAGGCGCAGTGGCCAAAGAAGCTTCCAGTAGCAGCACATCGAAACCAAATCCAACTGC
rJMFF016I17+          ACAAGGCGCAGTGGCCAAAGAAGCTTCCAGTAGCAGCACATCGAAACCAAATCCAACTGC
JMFN017M15-           ACAAGGCGCAGTGGCCAAAGAAGCTTCCAGTAGCAGCACATCGAAACCAAATCCAACTGC
rJMSF011G24+          ACAAGGCGCAGTGGCCAAAGAAGCTTCCAGTAGCAGCACATCGAAACCAAATCCAACTGC
                      ____________________________________________________________
consensus             ACAAGGCGCAGTGGCCAAAGAAGCTTCCAGTAGCAGCACATCGAAACCAAATCCAACTGC
 
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rJMFF008H17+          CAATCCCAAAGGAGCCTCACNGAACTCCAATGCCGACCAACCAAAGACCTCCAAGTCATC
rJMSF008G04+          CAATCCCAAAGGAGCCTCACAGAACTCCAATGCCGACCAACCAAAGACCTCCAAGTCATC
rJMSF050B04+          CAATCCCAAAGGAGCCTCACAGAACTCCAATGCCGACCAACCAAAGACCTCCAAGTCATC
rJMFF011A17+          CAATCCCAAAGGAGCCTCACAGAACTCCAATGCCGACCAACCAAAGACCTCCAAGTCATC
rJMSF005N21+          CAATCCCAAAGGAGCCTCACAGAACTCCAATGCCGACCAACCAAAGACCTNCAAGTCATC
rJMFF016I17+          CAATCCCAAAGGAGCCTCACAGAACTCCAATGCCGACCAACCAAAGACCTCCAAGTCATC
JMFN017M15-           CAATCCCAAAGGAGCCTCACAGAACTCCAATGCCGACCAACCAAAGACCTCCAAGTCATC
rJMSF011G24+          CAATCCCAAAGGAGCCTCACAGAACTCCAATGCCGACCAACCAAAGACCTCCAAGTCATC
                      ____________________________________________________________
consensus             CAATCCCAAAGGAGCCTCACAGAACTCCAATGCCGACCAACCAAAGACCTCCAAGTCATC
 
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rJMFF008H17+          CAAGAAGAAATCAAGGAAGTANNTGAACCCACCATTTGAAGGTTAATATTCAATTTGGGC
rJMSF008G04+          CAAGAAGAAATCAAGGAAGTAACTGAACCCACCATTTGAAGGTTAATATTCAATTTGGGC
rJMSF050B04+          CAAGAAGAAATCAAGGAAGTAACTGAACCCACCATTTGAAGGTTAATATTCAATTTGGGC
rJMFF011A17+          CAAGAAGAAATCAAGGAAGTAACTGAACCCACCATTTGAAGGTTAATATTCAATTTGGGC
rJMSF005N21+          CAAGANGAAATCAAGGAAGTAACTGAACCCACCATTTGAAGGTTAATATTCAATTTGGGC
rJMFF016I17+          CAAGAAGAAATCAAGGAAGTAACTGAACCCACCATTTGAAGGTTAATATTCAATTTGGGC
JMFN017M15-           CAAGAAGAAATCAAGGAAGTAACTGAACCCACCATTTGAAGGTTAATATTCAATTTGGGC
rJMSF011G24+          CAAGAAGAAATCAAGGAAGTAACTGAACCCACCATTTGAAGGTTAATATTCAATTTGGGC
                      ____________________________________________________________
consensus             CAAGAAGAAATCAAGGAAGTAACTGAACCCACCATTTGAAGGTTAATATTCAATTTGGGC
 
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rJMFF008H17+          ATANTTCATTGCATTTTCCCTTGCACAATTGGATCAGAGACTAAAATTTTCTATTGCAAG
rJMSF008G04+          ATACTTCATTGCATTTTCCCTTGCACAATTGGATCAGAGACTAAAATTTTCTATTGCAAG
rJMSF050B04+          ATACTTCATTGCATTTTCCCTTGCACAATTGGATCAGAGACTAAAATTTTCTATTGCAAG
rJMFF011A17+          ATACTTCATTGCATTTTCCCTTGCACAATTGGATCAGAGACTAAAATTTTCTATTGCAAG
rJMSF005N21+          ATACTTCATTGCATTTTCCCTTGCACAATTGGATCAGAGACTAAAATTTTCTATTGCAAG
rJMFF016I17+          ATACTTCATTGCATTTTCCCTTGCACAATTGGATCAGAGACTAAAATTTTCTATTGCAAG
JMFN017M15-           ATACTTCATTGCATTTTCCCTTGCACAATTGGATCAGAGACTAAAATTTTCTATTGCAAG
rJMSF011G24+          ATACTTCATTGCATTTTCCCTTGCACAATTGGATCAGAGACTAAAATTTTCTATTGCAAG
                      ____________________________________________________________
consensus             ATACTTCATTGCATTTTCCCTTGCACAATTGGATCAGAGACTAAAATTTTCTATTGCAAG
 
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rJMFF008H17+          TTAGCTCGGAATCA                                              
rJMSF008G04+          TTAGCTTGGAATCAACCTTC-AACTGAATTTT                            
rJMSF050B04+          TTAGCTTGGAATCAACCTTCAAACTGAATTTTTTGTTTTCCTGAATCAACTAACCGGTAC
rJMFF011A17+          TTAGCTTGGAATCAACCTTC-AACTGAATTTTTTGTTTTCCTGAATCAACTAACCGGTAC
rJMSF005N21+          TTAGCTCGGAATCAACCTTC-AACTGAATTTTTTGTTTTCCTGAATCAACTAACCGG   
rJMFF016I17+          TTAGCTTGGAATCAACCTTC-AACTGAATTTTTTGTTTTCCTGAATCAACTAACCGGTAC
JMFN017M15-           TTAGCTTGGAATCAACCTTC-AACTGAATTTTTTGTTTTCCTGAATCAACTAA       
rJMSF011G24+          TTAGCTTGGAATCAACCTTC-AACTGAATTTTTTGTTTTCCTGAATCAACTAACCGGTAC
                      ____________________________________________________________
consensus             TTAGCTTGGAATCAACCTTC-AACTGAATTTTTTGTTTTCCTGAATCAACTAACCGGTAC
 
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rJMSF050B04+          TGATCT                                                      
rJMFF011A17+          TGATCTTGTCAAAGGAATGAGCCGTAAATTT                             
rJMFF016I17+          TGATCTTGTCAAAGGAATGAGCCGTAAATTT                             
rJMSF011G24+          TGATCTTGTCAAAGGAATGAGCCGTAAATTTTGTGTTTATTTTTTACTTTCATCGAACTT
                      ____________________________________________________________
consensus             TGATCTTGTCAAAGGAATGAGCCGTAAATTTTGTGTTTATTTTTTACTTTCATCGAACTT