| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF010P09 | Sequence | 229 | 009338 (4) | 776 | 012543 (4) | ref|XP_010042502.1| | 5e-94 | PREDICTED: solanesyl diphosphate synthase 1-like, partial [Eucalyptus grandis] | |||
| JMSF016D16 | Sequence | 493 | 009338 (4) | ref|XP_011098150.1| | 2e-17 | PREDICTED: probable solanesyl-diphosphate synthase 3, chloroplastic isoform X1 | 747 | 012543 (4) | ref|XP_010042502.1| | 8e-96 | PREDICTED: solanesyl diphosphate synthase 1-like, partial [Eucalyptus grandis] |
| JMSF024O16 | Sequence | 575 | 009338 (4) | ref|XP_011098150.1| | 2e-20 | PREDICTED: probable solanesyl-diphosphate synthase 3, chloroplastic isoform X1 | 773 | 012543 (4) | ref|XP_010042502.1| | 2e-93 | PREDICTED: solanesyl diphosphate synthase 1-like, partial [Eucalyptus grandis] |
| JMSF035B17 | Sequence | 680 | 009338 (4) | ref|XP_011098151.1| | 2e-54 | PREDICTED: probable solanesyl-diphosphate synthase 3, chloroplastic isoform X2 | 715 | 012543 (4) | ref|XP_010042502.1| | 9e-92 | PREDICTED: solanesyl diphosphate synthase 1-like, partial [Eucalyptus grandis] |
This contig is upended
. : . : . : . : . : . :
rJMSF035B17+ GTGATGTTGAGCTCGAGGAATACTTGATCNAGAGTTANTACAAAACGGCTTCCTT
rJMSF016D16+ CGACTGTGATGTTGAGCTCGAGGAATACTTGATCAAGAGTTACTACAAAACGGCTTCCTT
rJMSF024O16+ GTGATGNTGAGCTCGAGGAATACTTGATCAAGAGTTACTACAAAACGGCTTCCTT
rJMSF010P09+ GTGATGTTGAGCTCGAGGNATACTTGATCAAGAGTTACTACAAAACGGCTTCCTT
____________________________________________________________
consensus CGACTGTGATGTTGAGCTCGAGGAATACTTGATCAAGAGTTACTACAAAACGGCTTCCTT
. : . : . : . : . : . :
rJMSF035B17+ GATCGCTGCTAGCACCAAAGGAGCTGCCATTTTTAGCGGAGTTGACAATGAGGTCTGCGA
rJMSF016D16+ GATCGCTGCTAGCACCAAAGGAGCTGCCATTTTTAGCGGAGTTGACAATGAGGTCTGCGA
rJMSF024O16+ GATCGCTGCTAGCACCAAAGGAGCTGCCATTTTTAGCGGAGTTGACAATGAGGTCTGCGA
rJMSF010P09+ GATCGCTGCTAGCACCAAAGGAGCTGCCATTTTTAGCGGAGTTGACAATGAGGTCTGCGA
____________________________________________________________
consensus GATCGCTGCTAGCACCAAAGGAGCTGCCATTTTTAGCGGAGTTGACAATGAGGTCTGCGA
. : . : . : . : . : . :
rJMSF035B17+ GCAGATGTATCAGTACGGGAGGAATCTTGGTCTGTCCTTCCAGATTGTCGATGACATATT
rJMSF016D16+ GCAGATGTATCAGTACGGGAGGAATCTTGGTCTGTCCTTCCAGATTGTCGATGACATATT
rJMSF024O16+ GCAGATGTATCAGTACGGGAGGAATCTTGGTCTGTCCTTCCAGATTGTCGATGACATATT
rJMSF010P09+ GCAGATGTATCAGTACGGGAGGAATCTTGGTCTGTCCTTCCAGATTGTCGATGACATATT
____________________________________________________________
consensus GCAGATGTATCAGTACGGGAGGAATCTTGGTCTGTCCTTCCAGATTGTCGATGACATATT
. : . : . : . : . : . :
rJMSF035B17+ GGACTTCACTCAATCAGCCGAGCAATTAGGGAAGCCGACTGGAAGTGACCTAGCAAAGGG
rJMSF016D16+ GGACTTCACTCAATCAGCCGAGCAATTAGGGAAGCCGACTGGAAGTGACCTAGCAAAGGG
rJMSF024O16+ GGACTTCACTCAATCAGCCGAGCAATTAGGGAAGCCGACTGGAAGTGACCTAGCAAAGGG
rJMSF010P09+ GGACTTCACTCAATCAGCCGAGCAATTAGGGAAGCCGACTGGAAGTGACCTAGCAAAGGG
____________________________________________________________
consensus GGACTTCACTCAATCAGCCGAGCAATTAGGGAAGCCGACTGGAAGTGACCTAGCAAAGGG
. : . : . : . : . : . :
rJMSF035B17+ GAACCTCACTGCCCCGGTTATCTTCGCGCTAGAAAAGGAGCCAAAACTGAGGGATATGAT
rJMSF016D16+ GAACCTCACTGCCCCGGTTATCTTCGCGCTAGAAAAGGAGCCAAAACTGAGGGATATGAT
rJMSF024O16+ GAACCTCACTGCCCCGGTTATCTTCGCGCTAGAAAAGGAGCCAAAACTGAGGGATATGAT
rJMSF010P09+ GAACCTCACTGCCCCGGTTATCTTCGCGCTAGAAAAGGAGCCAAAACTGAGGGATATGAT
____________________________________________________________
consensus GAACCTCACTGCCCCGGTTATCTTCGCGCTAGAAAAGGAGCCAAAACTGAGGGATATGAT
. : . : . : . : . : . :
rJMSF035B17+ TGAATCTGAGTTTTGTGAAACCGGGTCTCTTGAGGAGGCCATCAGCATTATCAAGAACTG
rJMSF016D16+ TGAATCTGAGTTTTGTGAAACCGGGTCTCTTGAGGAGGCCATCAGCATTATCAAGAACTG
rJMSF024O16+ TGAATCTGAGTTTTGTGAAACCGGGTCTCTTGAGGAGGCCATCAGCATTATCAAGAACTG
rJMSF010P09+ TGAATCTGAGTTTTGTGAAACCGGGTCTCTTGAGGAGGCCATCAGCATTATCAAGAACTG
____________________________________________________________
consensus TGAATCTGAGTTTTGTGAAACCGGGTCTCTTGAGGAGGCCATCAGCATTATCAAGAACTG
. : . : . : . : . : . :
rJMSF035B17+ TGGAGGTATCGAGAGGGCTCAAGAGTTGGCGAGGGAGAAAGCTGATCTAGCGATTCAGAA
rJMSF016D16+ TGGAGGTATCGAGAGGGCTCAAGAGTTGGCGAGGGAGAAAGCTGATCTAGCGATTCAGAA
rJMSF024O16+ TGGAGGTATCGAGAGGGCTCAAGAGTTGGCGAGGGAGAAAGCTGATCTAGCGATTCAGAA
rJMSF010P09+ TGGAGGTATCGAGAGGGCTCAAGAGTTGGCGAGGGAGAAAGCTGATCTAGCGATTCAGAA
____________________________________________________________
consensus TGGAGGTATCGAGAGGGCTCAAGAGTTGGCGAGGGAGAAAGCTGATCTAGCGATTCAGAA
. : . : . : . : . : . :
rJMSF035B17+ TCTCAAGTGTCTGCCTCCTAGTCCTTTCCGAATGGGGCTCGAGGAAATGGTGAAGTATAA
rJMSF016D16+ TCTCAAGTGTCTGCCTCCTAGTCCTTTCCGAATGGGGCTCGAGGAAATGGTGAAGTATAA
rJMSF024O16+ TCTCAAGTGTCTGCCTCCTAGTCCTTTCCGAATGGGGCTCGAGGAAATGGTGAAGTATAA
rJMSF010P09+ TCTCAAGTGTCTGCCTCCTAGTCCTTTCCGAATGGGGCTCGAGGAAATGGTGAAGTATAA
____________________________________________________________
consensus TCTCAAGTGTCTGCCTCCTAGTCCTTTCCGAATGGGGCTCGAGGAAATGGTGAAGTATAA
. : . : . : . : . : . :
rJMSF035B17+ TCTCGAGAGAATTGAATAGAATCCAGATTAAAGCACAGTTCGAGAAATGTATCTGCTATG
rJMSF016D16+ TCTCGAGAGAATTGAATAGAATCCAGATTAAAGCACAGTTCGAGAAATGTATCTGCTATG
rJMSF024O16+ TCTCGAGAGAATTGAATAGAATCCAGATTAAAGCACAGTTCGAGAAATGTATCTGCTATG
rJMSF010P09+ TCTCGAGAGAATTGAATAGAATCCAGATTAAAGCACAGTTCGAGAAATGTATCTGCTATG
____________________________________________________________
consensus TCTCGAGAGAATTGAATAGAATCCAGATTAAAGCACAGTTCGAGAAATGTATCTGCTATG
. : . : . : . : . : . :
rJMSF035B17+ AGTTGTAGAGATTGAAATCGAGCCTCGGGGAAGAGCCATTCTCGTTGAATTCTTTTACTT
rJMSF016D16+ AGTTGTAGAGATTGAAATCGAGCCTCGGGGAAGAGCCATTCTCGTTGAATTCTTTTACTT
rJMSF024O16+ AGTTGTAGAGATTGAAATCGAGCCTCGGGGAAGAGCCATTCTCGTTGAATTCTTTTACTT
rJMSF010P09+ AGTTGTAGAGATTGAAATCGAGCCTCGGGGAAGAGCCATTCTCGTTGAATTCTTTTACTT
____________________________________________________________
consensus AGTTGTAGAGATTGAAATCGAGCCTCGGGGAAGAGCCATTCTCGTTGAATTCTTTTACTT
. : . : . : . : . : . :
rJMSF035B17+ CAACTGCTTCCTTCCTCATCTGCAAGTAATGAGCAGCTTTTGCTCCTCAATGGTTGTATA
rJMSF016D16+ CAACTGCTTCCTTCCTCATCTGCAAGTAATGAGCAGCTTTTGCTCCTCAATGGTTGTATA
rJMSF024O16+ CAACTGCTTCCTTCCTCATCTGCAAGTAATGAGCAGCTTTTGCTCCTCAATGGTTGTATA
rJMSF010P09+ CAACTGCTTCCTTCCTCATCTGCAAGTAATGAGCAGCTTTTGCTCCTCAATGGTTGTATA
____________________________________________________________
consensus CAACTGCTTCCTTCCTCATCTGCAAGTAATGAGCAGCTTTTGCTCCTCAATGGTTGTATA
. : . : . : . : . : . :
rJMSF035B17+ CTCATAAAAGGTCATGAGCAATGACTCTAGCTCTTAGTATACCTCAATGTTATCATTATT
rJMSF016D16+ CTCATAAAAGGTCATGAGCAATGACTCTAGCTCTTAGTATACCTCAATGTTATCATTATT
rJMSF024O16+ CTCATAAAAGGTCATGAGCAATGACTCTAGCTCTTAGTATACCTCAATGTTATCATTATT
rJMSF010P09+ CTCATAAAAGGTCATGAGCAATGACTCTAGCTCTTAGTATACCTCAATGTTATCATTATT
____________________________________________________________
consensus CTCATAAAAGGTCATGAGCAATGACTCTAGCTCTTAGTATACCTCAATGTTATCATTATT
. : . : . : . : . : . :
rJMSF016D16+ TTTTTTTCTTTNGTAT
rJMSF024O16+ TTTTTTTCTTTTGTATTGGCAAAGGAGAATGAATTTAAATGTTGTTGTAA
rJMSF010P09+ TTTTTTTCTTTTGTATTGNCAAAGGAGAGTNAATTCAAATGTNGTTGTAACAAATGATAT
____________________________________________________________
consensus TTTTTTTCTTTTGTATTGGCAAAGGAGAGTGAATTTAAATGTTGTTGTAACAAATGATAT