Contig 012541:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF010I15-                                                             CAATTTACTC
                      ____________________________________________________________
consensus                                                               CAATTTACTC
 
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JMSF008C18-                     ACCGGTAATACATTAGTCCGCGAATGTTATCCACAACGGTTTCAAACTCC
JMSF010I15-           CTCGGAAAGCACCGGTAATACATTAGTCCGCGAATGTTATCCACAACGGTTTCAAACTCC
JMSF033I03-                                                          GGTTTCAAACTCC
                      ____________________________________________________________
consensus             CTCGGAAAGCACCGGTAATACATTAGTCCGCGAATGTTATCCACAACGGTTTCAAACTCC
 
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JMSF008C18-           AGTCTGCACTGCCTTCCGCTGTAATCAATCCCGGAGAAGAAGCGGAGCAAATGCCGGCGG
JMSF010I15-           AGTCTGCACTGCCTTCCGCTGTAATCAATCCCGGAGAAGAAGCGGAGCAAATGCCGGCGG
JMSF033I03-           AGTCTGCACTGCCTTCCGCTGTAATCAATCCCGGAGAAGAAGCGGAGCAAATGCCGGCGG
                      ____________________________________________________________
consensus             AGTCTGCACTGCCTTCCGCTGTAATCAATCCCGGAGAAGAAGCGGAGCAAATGCCGGCGG
 
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JMSF008C18-           CGACTTCCTTTCTCAGCTCTTCGGCCGGAGCTTCGCACCTCCCCTTCTCCCTCGTAGTAA
JMSF010I15-           CGACTTCCTTTCTCAGCTCTTCGGCCGGAGCTTCGCACCTCCCCTTCTCCCTCGTAGTAA
JMSF033I03-           CGACTTCCTTTCTCAGCTCTTCGGCCGGAGCTTCGCACCTCCCCTTCTCCCTCGTAGTAA
                      ____________________________________________________________
consensus             CGACTTCCTTTCTCAGCTCTTCGGCCGGAGCTTCGCACCTCCCCTTCTCCCTCGTAGTAA
 
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JMSF008C18-           TCTCTTCTTCTTCTTCTTCCTCCACCCTAAAACCCCACGTGGGGTTTATCTTCAATTCAC
JMSF010I15-           TCTCTTCTTCTTCTTCTTCCTCCACCCTAAAACCCCACGTGGGGTTTATCTTCAATTCAC
JMSF033I03-           TCTCTTCTTCTTCTTCTTCCTCCACCCTAAAACCCCACGTGGGGTTTATCTTCAATTCAC
                      ____________________________________________________________
consensus             TCTCTTCTTCTTCTTCTTCCTCCACCCTAAAACCCCACGTGGGGTTTATCTTCAATTCAC
 
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JMSF008C18-           TCCCGAAATGCCCACCCCGCTTGCTCTTCTCTTCCCCCCACGCCGCCACCG         
JMSF010I15-           TCCCGAAATGCCCACCCCGCTTGCTCTTCTCTTCCCCCCACGCCGCCACCGCCGGNAGAA
JMSF033I03-           TCCCGAAATGCCCACCCCGCTTGCTCTTCTCTTCCCCCCACGCCGCCACCGCCGGCAGAA
                      ____________________________________________________________
consensus             TCCCGAAATGCCCACCCCGCTTGCTCTTCTCTTCCCCCCACGCCGCCACCGCCGGCAGAA
 
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JMSF010I15-           CCTCTCTCCTCCTCCGCCCCTCGGCTCTCGNCGTCGA                       
JMSF033I03-           CCTCTCTCCTCCTCCGCCCCTCGGCTCTCGCCGTCGACGACGCTCTTGGGCAGTCCGCCG
                      ____________________________________________________________
consensus             CCTCTCTCCTCCTCCGCCCCTCGGCTCTCGCCGTCGACGACGCTCTTGGGCAGTCCGCCG
 
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JMSF033I03-           ATACGTTCTCGGTGCAGCCCAAGATTGACAAGAGCGGGAGATTTTGCAGCCCCAGGGCGG
                      ____________________________________________________________
consensus             ATACGTTCTCGGTGCAGCCCAAGATTGACAAGAGCGGGAGATTTTGCAGCCCCAGGGCGG
 
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JMSF033I03-           CCCGGGAGCTTGCTCTAATGACTCTCTACGCCTCGTGTCTAGAAGGGACTGATCCCGTAA
                      ____________________________________________________________
consensus             CCCGGGAGCTTGCTCTAATGACTCTCTACGCCTCGTGTCTAGAAGGGACTGATCCCGTAA
 
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JMSF033I03-           GGCTTTTCGAGAAGAGGTTGACCATTAGAAGAGAACCTGGCTATGAATTTGATAAAGAGT
                      ____________________________________________________________
consensus             GGCTTTTCGAGAAGAGGTTGACCATTAGAAGAGAACCTGGCTATGAATTTGATAAAGAGT
 
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JMSF033I03-           GTTTAATGAAATATAACCATATGAGCTTTGGAGGGCCACCGGTGACAACCGAGACACTGG
                      ____________________________________________________________
consensus             GTTTAATGAAATATAACCATATGAGCTTTGGAGGGCCACCGGTGACAACCGAGACACTGG
 
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JMSF033I03-           AGGAAGCTGATCAGCTTGAGCTCAGTGATGAAAAGGAGTCTGAAGTTGAAGCAGAAGTTC
rJMSF033I03+                                 AGTGATGAAAAGGAGTNTGAAGTTGAAGCAGAAGTTN
                      ____________________________________________________________
consensus             AGGAAGCTGATCAGCTTGAGCTCAGTGATGAAAAGGAGTCTGAAGTTGAAGCAGAAGTTC
 
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JMSF033I03-           TTTCAGCACCCCCGAAGTTAGTTTACAGCAAACTAATTTTACGCTTCACCCGGAA     
rJMSF033I03+          TTTCAGCNCCCCCGAAGTTAGTTTACNGCAAACTAATTTTNCGCTTCCCCCGGAAACTTT
                      ____________________________________________________________
consensus             TTTCAGCACCCCCGAAGTTAGTTTACAGCAAACTAATTTTACGCTTCCCCCGGAAACTTT
 
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rJMSF033I03+          TGGTTGCAGTTGCCGAGAAATGGGACNGTCATGTGCTNGTAANTGATAAAGTTGCCCCTC
                      ____________________________________________________________
consensus             TGGTTGCAGTTGCCGAGAAATGGGACNGTCATGTGCTNGTAANTGATAAAGTTGCCCCTC
 
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rJMSF033I03+          NCAATTGGAAGAGTGAACCGGCTGGAAGAATNTTGGAACTTTNGATTNTTCNTTTGGCAA
                      ____________________________________________________________
consensus             NCAATTGGAAGAGTGAACCGGCTGGAAGAATNTTGGAACTTTNGATTNTTCNTTTGGCAA
 
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rJMSF033I03+          NGTTTGAAATTGCNGTGGNGGGAACTNGGCCCCAAATAGTTNTCAACGNGGCGGTAGATN
rJMSF008C18+                                                           GGCGGTAGATN
rJMFF039G02+                                                              GGTAGATN
                      ____________________________________________________________
consensus             NGTTTGAAATTGCNGTGGNGGGAACTNGGCCCCAAATAGTTNTCAACGNGGCGGTAGATN
 
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rJMSF033I03+          TTGCAAAACGGTTNTGTGATGGGGCAGCNCCTNGTATCATCAACGGTTGCCTCNGGACNT
rJMSF008C18+          TTGCAAAACGGTTNTGTGATGGGGCAGCNCCTNGTATCATCAACGGTTGCCTCNGGACNT
rJMFF039G02+          TTGCAAAACGGTTTTGNGATGGGGCAGCCCCTTGTNTCATCAACGGNTNCCTCAGGACAT
                      ____________________________________________________________
consensus             TTGCAAAACGGTTTTGTGATGGGGCAGCCCCTTGTATCATCAACGGTTGCCTCAGGACAT
 
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rJMSF033I03+          TTGTCAACGATNTNGGGGGAACTAGCGCTGGCCGAATAACAAACTCNAGCGTTAAGCCGT
rJMSF008C18+          TTGTCAACGATNT-CGGGGAACTAGCGCTGGCCGAATAACAAACTCNAGCGTTAAGCCGT
rJMFF039G02+          TTGTCAACGATTTNGGGGGAACTAGCNCTGGCCGAATAACAAACTCAAGCGTTAAGCNGT
                      ____________________________________________________________
consensus             TTGTCAACGATTTNGGGGGAACTAGCGCTGGCCGAATAACAAACTCAAGCGTTAAGCCGT
 
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rJMSF033I03+          CGGTTTTTACCTAGATGCNTTGTCGNGGTCAAGGTNTTCNCCTAACNCCGTGTTGCTGAG
rJMSF008C18+          CGGTTTTTACCNAGATGCNTTGTCGNGGTCAAGGTNTTCNCCNAACNCCGTGTTGCTGAG
rJMFF039G02+          CGGTTTTTNCCTAGANGCNTTGTNGAGGTCAAGGTTTTCNCCTAACNCCGTGTTGCTGAG
                      ____________________________________________________________
consensus             CGGTTTTTACCTAGATGCNTTGTCGAGGTCAAGGTTTTCNCCTAACNCCGTGTTGCTGAG
 
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rJMSF033I03+          TGAGCTGTAGCCGTCGAGAGAGAGAGCGCTTATTNTNTCGGGCCNTTTTTACGTAAAGCC
rJMSF008C18+          TGAGCNGTAGCCGTCGAGAGAGAGAGCGCTTATTCTCTCGGGCCNTTTTTACGTAAAGCC
rJMFF039G02+          TGAGCTGTANCNNTNGAGAGAGAGANCGCTTATTNTNTCGGGCCATTTTTNCGTAAANCC
                      ____________________________________________________________
consensus             TGAGCTGTAGCCGTCGAGAGAGAGAGCGCTTATTCTCTCGGGCCATTTTTACGTAAAGCC
 
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rJMSF033I03+          CTGGAAGGGCNTGCCGGAATGAAATTNTTGGNGCCNTAACCGGCGATTGCGAGGCGGGGC
rJMSF008C18+          CTGGAAGGGCNTGCCGGAATGAAATTNTTGGNGCCNTAACCGGCGATTGCGNGGCGGGGC
rJMFF039G02+          NTGGAAGGGCANGCCGGAANGAAATTTTTGGNGCCATAACAGGNGATTGNGAGGCGGGGC
                      ____________________________________________________________
consensus             CTGGAAGGGCATGCCGGAATGAAATTTTTGGNGCCATAACCGGCGATTGCGAGGCGGGGC
 
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rJMSF033I03+          AAAAAAAAAAAATTATATGTTGAATATAGAGAGCAAGTGTTGTATATGATGATAATGCCC
rJMSF008C18+          AAAAAAAAAAAATTATATGTTGAATATAGAGAGCAAGTGTTGTATATGATGATAATGCCC
rJMFF039G02+          AAAAAAAAAAAATTATATGTTGAATATAGAGAGCAAGTGTTGTATATGATGATAATGCCC
rJMSF010I15+          AAAAAAAAAAAATTATATGTTGAATATAGAGAGCAAGTGTTGTATATGATGATAATGCCC
                      ____________________________________________________________
consensus             AAAAAAAAAAAATTATATGTTGAATATAGAGAGCAAGTGTTGTATATGATGATAATGCCC
 
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rJMSF033I03+          TGCTAATAC                                                   
rJMSF008C18+          TGCTAATACTGGCTATTGAAACTGGGATTTTTATGATC                      
rJMFF039G02+          TGCTAATACTGGCTATTGAAACTGGGATTTTTATGATCAATGTTGAATTTCATAGGAACA
rJMSF010I15+          TGCTAATACTGGCTATTGAAACTGGGATTTTTATGATCAATGTTGAATTTCATAGGAACA
                      ____________________________________________________________
consensus             TGCTAATACTGGCTATTGAAACTGGGATTTTTATGATCAATGTTGAATTTCATAGGAACA
 
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rJMFF039G02+          TTGGATAAT                                                   
rJMSF010I15+          TTGGATAATTGAAGATTTGAAGTGTATTGTTGTTGTGTGTTCTGCTGTCTAAGTAGATAT
                      ____________________________________________________________
consensus             TTGGATAATTGAAGATTTGAAGTGTATTGTTGTTGTGTGTTCTGCTGTCTAAGTAGATAT
 
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rJMSF010I15+          ATACAGCTATATCAAGTGATTTCTTCTGTTTTTGCTTTTACCTGTATCTTACTAAACATT
                      ____________________________________________________________
consensus             ATACAGCTATATCAAGTGATTTCTTCTGTTTTTGCTTTTACCTGTATCTTACTAAACATT