Contig 012539:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF010H09Sequence464013354 (3)790012539 (3)emb|CDP02533.1|3e-58unnamed protein product [Coffea canephora]
JMSF020E23Sequence610013354 (3)ref|XP_009619625.1|110PREDICTED: uncharacterized protein LOC104111597 [Nicotiana tomentosiformis]794012539 (3)emb|CDP02533.1|1e-51unnamed protein product [Coffea canephora]
JMSF022F04Sequence650013354 (3)ref|XP_009619625.1|85.1PREDICTED: uncharacterized protein LOC104111597 [Nicotiana tomentosiformis]774012539 (3)emb|CDP02533.1|9e-59unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF020E23+                                                    AAATATATTTTCATGACC
                      ____________________________________________________________
consensus                                                       AAATATATTTTCATGACC
 
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rJMSF022F04+                              GTTAAACACATCGGTGATGGAAAATAGAATTATTTTAGAT
rJMSF020E23+          GTCATGGAGATTTTACTGTTGTTAAACACATCGGTGATGGAAAATAGAATTATTTTAGAT
rJMSF010H09+                              GTTAAACACATCGGTGATGGAAAATAGAATTATTTTAGAT
                      ____________________________________________________________
consensus             GTCATGGAGATTTTACTGTTGTTAAACACATCGGTGATGGAAAATAGAATTATTTTAGAT
 
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rJMSF022F04+          GGTTCACAACTCGATGGATTTGATAAGAGGAAATTTCCTTCTCCAGGATTTCAAGTCGAG
rJMSF020E23+          GGTTCACAACTCGATGGATTTGATAAGAGGAAATTTCCTTCTCCAGGATTTCAAGTCGAG
rJMSF010H09+          GGTTCACAACTCGATGGATTTGATAAGAGGAAATTTCCTTCTTCAGGATTTCAAGTCGAG
                      ____________________________________________________________
consensus             GGTTCACAACTCGATGGATTTGATAAGAGGAAATTTCCTTCTCCAGGATTTCAAGTCGAG
 
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rJMSF022F04+          ATCGTTATGATAGATTATGATGGAACCATCCCAGCAAAGTTTAAGTCCGAGGATGCAAGC
rJMSF020E23+          ATCGTTATGATAGATTATGATGGAACCATCCCAGCAAAGTTTAAGTCCGAGGATGCAAGC
rJMSF010H09+          ATCGTTATGATAGATTATGATGGAACCATCCCAGCAAAGTTTAAGTCCGAGGATGCAAGC
                      ____________________________________________________________
consensus             ATCGTTATGATAGATTATGATGGAACCATCCCAGCAAAGTTTAAGTCCGAGGATGCAAGC
 
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rJMSF022F04+          AAGAAAAGTGATGAGATGTCAGGAACCAATTCCTCAACTGATGGTACCCAAGCTAATTCT
rJMSF020E23+          AAGAAAAGTGATGAGATGTCAGGAACCAATTCCTCAACTGATGGTACCCAAGCTAATTCT
rJMSF010H09+          AAGAAAAGTGATGAGATGTCAGGAACCAATTCCTCAACTGATGGTACCCAAGCTAATTCT
                      ____________________________________________________________
consensus             AAGAAAAGTGATGAGATGTCAGGAACCAATTCCTCAACTGATGGTACCCAAGCTAATTCT
 
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rJMSF022F04+          GACCAAAGTAAGGGGTCTGGAAGCCGAGATCATAATGATGATGTGTTTTCTGATAGCGAG
rJMSF020E23+          GACCAAAGTAAGGGGTCTGGAAGCCGAGATCATAATGATGATGTGTTTTCTGATAGCGAG
rJMSF010H09+          GACCAAAGTAAGGGGTCTGGAAGCCGAGATCATAATGATGATGTGTTTTCTGATAGCGAG
                      ____________________________________________________________
consensus             GACCAAAGTAAGGGGTCTGGAAGCCGAGATCATAATGATGATGTGTTTTCTGATAGCGAG
 
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rJMSF022F04+          GGAGAGGAATCGACCAAAACCAGTGCTCGCAGCTCATCTGCAGCGCCATCTGGTGGAGTT
rJMSF020E23+          GGAGAGGAATCGACCAAAACCAGTGCTCGCAGCTCATCTGCAGCGCCATCTGGTGGAGTT
rJMSF010H09+          GGAGAGGAATCGACCAAAACCAGTGCTCGCAGCTCATCTGCAGCGCCATCTGGTGGAGTT
                      ____________________________________________________________
consensus             GGAGAGGAATCGACCAAAACCAGTGCTCGCAGCTCATCTGCAGCGCCATCTGGTGGAGTT
 
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rJMSF022F04+          ATTGAATCCAGCACTAGCGAGGAGCAAATAACCCAAGTCACATGCCAAACCGAGCAACTC
rJMSF020E23+          ATTGAATCCAGCACTAGCGAGGAGCAAATAACCCAAGTCACATGCCAAACCGAGCAACTC
rJMSF010H09+          ATTGAATCCAGCACTAGCGAGGAGCAAATAACCCAAGTCACATGCCAAACCGAGCAACTC
                      ____________________________________________________________
consensus             ATTGAATCCAGCACTAGCGAGGAGCAAATAACCCAAGTCACATGCCAAACCGAGCAACTC
 
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rJMSF022F04+          ACCATTGGAGGCCAGGAGCCCACAGACTTGAAGACTGATACCTCCAGTGAAATAAAAATT
rJMSF020E23+          ACCATTGGAGGCCAGGAGCCCACAGACTTGAAGACTGATACCTCCAGTGAAATAAAAATT
rJMSF010H09+          ACCATTGGAGGCCAGGAGCCCACAGACTTGAAGACTGATACCTCCAGTGAAATAAAAATT
                      ____________________________________________________________
consensus             ACCATTGGAGGCCAGGAGCCCACAGACTTGAAGACTGATACCTCCAGTGAAATAAAAATT
 
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rJMSF022F04+          GATGCTGTCAAAACGACTGCCAGCATTCCCAACCTGGGATCAACTGATATTAAAGCTATA
rJMSF020E23+          GATGCTGTCAAAACGACTGCCAGCATTCCCAACCTGGGATCAACTGATATTAAAGCTATA
rJMSF010H09+          GATGCTGTCAAAACGACTGCCAGCATTCCCAACCTGGGATCAACTGATATTAAAGCTATA
                      ____________________________________________________________
consensus             GATGCTGTCAAAACGACTGCCAGCATTCCCAACCTGGGATCAACTGATATTAAAGCTATA
 
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rJMSF022F04+          GCAGCAGATGCTTCTGTCTTCAGTTTCGGAGATGATGATGAAGATTATGAGAGTGAATGA
rJMSF020E23+          GCAGCAGATGCTTCTGTCTTCAGTTTCGGAGATGATGATGAAGATTATGAGAGTGAATGA
rJMSF010H09+          GCAGCAGATGCTTCTGTCTTCAGTTTCGGAGATGATGATGAAGATTATGAGAGTGAATGA
                      ____________________________________________________________
consensus             GCAGCAGATGCTTCTGTCTTCAGTTTCGGAGATGATGATGAAGATTATGAGAGTGAATGA
 
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rJMSF022F04+          AGCAATTAACTGCCTTGAAAGAATGAAACTCAGATAGGTTATTCATCATACAGTCTTTGT
rJMSF020E23+          AGCAATTAACTGCCTTGAAAGAATGAAACTCAGATAGGTTATTCATCATACAGTCTTTGT
rJMSF010H09+          AGCAATTAACTGCCTTGAAAGAATGAAACTCAGATAGGTTATTCATCATACAGTCTTTGT
                      ____________________________________________________________
consensus             AGCAATTAACTGCCTTGAAAGAATGAAACTCAGATAGGTTATTCATCATACAGTCTTTGT
 
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rJMSF022F04+          TGCCTTATCTCTTTTATTTTCTTTCTGTTTTTCACTTTTCAATTTTATTTATTTATTTTT
rJMSF020E23+          TGCCTTATCTCTTTTATTTTCTTTCTGTTTTTCACTTTTCAATTTTATTTATTTATTTTT
rJMSF010H09+          TGCCTTATCTCTTTTATTTTCTTTCTGTTTTTCACTTTTCAATTTTATTTATTTATTTTT
                      ____________________________________________________________
consensus             TGCCTTATCTCTTTTATTTTCTTTCTGTTTTTCACTTTTCAATTTTATTTATTTATTTTT
 
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rJMSF022F04+          TTCATTTATCTAAAGCTCTGATGTAAAGAAGCTCAATATTATACTCATA           
rJMSF020E23+          TTCATTTATCTAAAGCTCTGATGTAAAGAAGCTCAATATTATACTCATA           
rJMSF010H09+          TTCATTTATCTAAAGCTCTGATGTAAAGAAGCTCAATATTATACTCATAGACATCTTACC
                      ____________________________________________________________
consensus             TTCATTTATCTAAAGCTCTGATGTAAAGAAGCTCAATATTATACTCATAGACATCTTACC