Contig 012539:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF010H09Sequence464013354 (3)790012539 (3)emb|CDP02533.1|3e-58unnamed protein product [Coffea canephora]
JMSF020E23Sequence610013354 (3)ref|XP_009619625.1|110PREDICTED: uncharacterized protein LOC104111597 [Nicotiana tomentosiformis]794012539 (3)emb|CDP02533.1|1e-51unnamed protein product [Coffea canephora]
JMSF022F04Sequence650013354 (3)ref|XP_009619625.1|85.1PREDICTED: uncharacterized protein LOC104111597 [Nicotiana tomentosiformis]774012539 (3)emb|CDP02533.1|9e-59unnamed protein product [Coffea canephora]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF020E23+ AAATATATTTTCATGACC
                      ____________________________________________________________
consensus AAATATATTTTCATGACC
 
. : . : . : . : . : . :
rJMSF022F04+ GTTAAACACATCGGTGATGGAAAATAGAATTATTTTAGAT
rJMSF020E23+ GTCATGGAGATTTTACTGTTGTTAAACACATCGGTGATGGAAAATAGAATTATTTTAGAT
rJMSF010H09+ GTTAAACACATCGGTGATGGAAAATAGAATTATTTTAGAT
                      ____________________________________________________________
consensus GTCATGGAGATTTTACTGTTGTTAAACACATCGGTGATGGAAAATAGAATTATTTTAGAT
 
. : . : . : . : . : . :
rJMSF022F04+ GGTTCACAACTCGATGGATTTGATAAGAGGAAATTTCCTTCTCCAGGATTTCAAGTCGAG
rJMSF020E23+ GGTTCACAACTCGATGGATTTGATAAGAGGAAATTTCCTTCTCCAGGATTTCAAGTCGAG
rJMSF010H09+ GGTTCACAACTCGATGGATTTGATAAGAGGAAATTTCCTTCTTCAGGATTTCAAGTCGAG
                      ____________________________________________________________
consensus GGTTCACAACTCGATGGATTTGATAAGAGGAAATTTCCTTCTCCAGGATTTCAAGTCGAG
 
. : . : . : . : . : . :
rJMSF022F04+ ATCGTTATGATAGATTATGATGGAACCATCCCAGCAAAGTTTAAGTCCGAGGATGCAAGC
rJMSF020E23+ ATCGTTATGATAGATTATGATGGAACCATCCCAGCAAAGTTTAAGTCCGAGGATGCAAGC
rJMSF010H09+ ATCGTTATGATAGATTATGATGGAACCATCCCAGCAAAGTTTAAGTCCGAGGATGCAAGC
                      ____________________________________________________________
consensus ATCGTTATGATAGATTATGATGGAACCATCCCAGCAAAGTTTAAGTCCGAGGATGCAAGC
 
. : . : . : . : . : . :
rJMSF022F04+ AAGAAAAGTGATGAGATGTCAGGAACCAATTCCTCAACTGATGGTACCCAAGCTAATTCT
rJMSF020E23+ AAGAAAAGTGATGAGATGTCAGGAACCAATTCCTCAACTGATGGTACCCAAGCTAATTCT
rJMSF010H09+ AAGAAAAGTGATGAGATGTCAGGAACCAATTCCTCAACTGATGGTACCCAAGCTAATTCT
                      ____________________________________________________________
consensus AAGAAAAGTGATGAGATGTCAGGAACCAATTCCTCAACTGATGGTACCCAAGCTAATTCT
 
. : . : . : . : . : . :
rJMSF022F04+ GACCAAAGTAAGGGGTCTGGAAGCCGAGATCATAATGATGATGTGTTTTCTGATAGCGAG
rJMSF020E23+ GACCAAAGTAAGGGGTCTGGAAGCCGAGATCATAATGATGATGTGTTTTCTGATAGCGAG
rJMSF010H09+ GACCAAAGTAAGGGGTCTGGAAGCCGAGATCATAATGATGATGTGTTTTCTGATAGCGAG
                      ____________________________________________________________
consensus GACCAAAGTAAGGGGTCTGGAAGCCGAGATCATAATGATGATGTGTTTTCTGATAGCGAG
 
. : . : . : . : . : . :
rJMSF022F04+ GGAGAGGAATCGACCAAAACCAGTGCTCGCAGCTCATCTGCAGCGCCATCTGGTGGAGTT
rJMSF020E23+ GGAGAGGAATCGACCAAAACCAGTGCTCGCAGCTCATCTGCAGCGCCATCTGGTGGAGTT
rJMSF010H09+ GGAGAGGAATCGACCAAAACCAGTGCTCGCAGCTCATCTGCAGCGCCATCTGGTGGAGTT
                      ____________________________________________________________
consensus GGAGAGGAATCGACCAAAACCAGTGCTCGCAGCTCATCTGCAGCGCCATCTGGTGGAGTT
 
. : . : . : . : . : . :
rJMSF022F04+ ATTGAATCCAGCACTAGCGAGGAGCAAATAACCCAAGTCACATGCCAAACCGAGCAACTC
rJMSF020E23+ ATTGAATCCAGCACTAGCGAGGAGCAAATAACCCAAGTCACATGCCAAACCGAGCAACTC
rJMSF010H09+ ATTGAATCCAGCACTAGCGAGGAGCAAATAACCCAAGTCACATGCCAAACCGAGCAACTC
                      ____________________________________________________________
consensus ATTGAATCCAGCACTAGCGAGGAGCAAATAACCCAAGTCACATGCCAAACCGAGCAACTC
 
. : . : . : . : . : . :
rJMSF022F04+ ACCATTGGAGGCCAGGAGCCCACAGACTTGAAGACTGATACCTCCAGTGAAATAAAAATT
rJMSF020E23+ ACCATTGGAGGCCAGGAGCCCACAGACTTGAAGACTGATACCTCCAGTGAAATAAAAATT
rJMSF010H09+ ACCATTGGAGGCCAGGAGCCCACAGACTTGAAGACTGATACCTCCAGTGAAATAAAAATT
                      ____________________________________________________________
consensus ACCATTGGAGGCCAGGAGCCCACAGACTTGAAGACTGATACCTCCAGTGAAATAAAAATT
 
. : . : . : . : . : . :
rJMSF022F04+ GATGCTGTCAAAACGACTGCCAGCATTCCCAACCTGGGATCAACTGATATTAAAGCTATA
rJMSF020E23+ GATGCTGTCAAAACGACTGCCAGCATTCCCAACCTGGGATCAACTGATATTAAAGCTATA
rJMSF010H09+ GATGCTGTCAAAACGACTGCCAGCATTCCCAACCTGGGATCAACTGATATTAAAGCTATA
                      ____________________________________________________________
consensus GATGCTGTCAAAACGACTGCCAGCATTCCCAACCTGGGATCAACTGATATTAAAGCTATA
 
. : . : . : . : . : . :
rJMSF022F04+ GCAGCAGATGCTTCTGTCTTCAGTTTCGGAGATGATGATGAAGATTATGAGAGTGAATGA
rJMSF020E23+ GCAGCAGATGCTTCTGTCTTCAGTTTCGGAGATGATGATGAAGATTATGAGAGTGAATGA
rJMSF010H09+ GCAGCAGATGCTTCTGTCTTCAGTTTCGGAGATGATGATGAAGATTATGAGAGTGAATGA
                      ____________________________________________________________
consensus GCAGCAGATGCTTCTGTCTTCAGTTTCGGAGATGATGATGAAGATTATGAGAGTGAATGA
 
. : . : . : . : . : . :
rJMSF022F04+ AGCAATTAACTGCCTTGAAAGAATGAAACTCAGATAGGTTATTCATCATACAGTCTTTGT
rJMSF020E23+ AGCAATTAACTGCCTTGAAAGAATGAAACTCAGATAGGTTATTCATCATACAGTCTTTGT
rJMSF010H09+ AGCAATTAACTGCCTTGAAAGAATGAAACTCAGATAGGTTATTCATCATACAGTCTTTGT
                      ____________________________________________________________
consensus AGCAATTAACTGCCTTGAAAGAATGAAACTCAGATAGGTTATTCATCATACAGTCTTTGT
 
. : . : . : . : . : . :
rJMSF022F04+ TGCCTTATCTCTTTTATTTTCTTTCTGTTTTTCACTTTTCAATTTTATTTATTTATTTTT
rJMSF020E23+ TGCCTTATCTCTTTTATTTTCTTTCTGTTTTTCACTTTTCAATTTTATTTATTTATTTTT
rJMSF010H09+ TGCCTTATCTCTTTTATTTTCTTTCTGTTTTTCACTTTTCAATTTTATTTATTTATTTTT
                      ____________________________________________________________
consensus TGCCTTATCTCTTTTATTTTCTTTCTGTTTTTCACTTTTCAATTTTATTTATTTATTTTT
 
. : . : . : . : . : . :
rJMSF022F04+ TTCATTTATCTAAAGCTCTGATGTAAAGAAGCTCAATATTATACTCATA
rJMSF020E23+ TTCATTTATCTAAAGCTCTGATGTAAAGAAGCTCAATATTATACTCATA
rJMSF010H09+ TTCATTTATCTAAAGCTCTGATGTAAAGAAGCTCAATATTATACTCATAGACATCTTACC
                      ____________________________________________________________
consensus TTCATTTATCTAAAGCTCTGATGTAAAGAAGCTCAATATTATACTCATAGACATCTTACC