Contig 012533:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF004M20Sequence307012533 (4)ref|XP_011099392.1|2e-29PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial364012533 (4)gb|KHN20371.1|6e-19NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial [Glycine s
JMSF009M15Sequence258012533 (4)ref|XP_011099392.1|3e-14PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial734012533 (4)ref|XP_011099392.1|1e-79PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial

Alignment

This contig is upended


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JMSF009M15-                              GGGAAGAAGAGAGATTGATTCATTTTTGCTTAGCGACTGTT
                      ____________________________________________________________
consensus                                GGGAAGAAGAGAGATTGATTCATTTTTGCTTAGCGACTGTT
 
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JMSF009M15-           CTCGCGTCAGCGAAAAATGGCGAGTAGCACTCTGCAACGATTAGCTAGGCGTTCGCACCA
                      ____________________________________________________________
consensus             CTCGCGTCAGCGAAAAATGGCGAGTAGCACTCTGCAACGATTAGCTAGGCGTTCGCACCA
 
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JMSF009M15-           GGCTTATGGAGTCTCGGTGACGCCGCTATCCAGAGCATTCTCTGCTTCTTCCTCGGACTC
                      ____________________________________________________________
consensus             GGCTTATGGAGTCTCGGTGACGCCGCTATCCAGAGCATTCTCTGCTTCTTCCTCGGACTC
 
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JMSF009M15-           GTTGGTGGAGATCCAGCGCGGAGAGGTCGGTATGGTCTCCGGTATTCCCCAAGAGCATCT
JMSF004M20-                  GAGATCCAGCGCGGAGAGGTCGGTATGGTCTCCGGTATTCCCCAAGAGCATCT
rJMSF009M15+                 GAGATCCAGCGCGGAGAGGTCGGTATGGTCTCCGGTATTCCCCAAGAGCATCT
                      ____________________________________________________________
consensus             GTTGGTGGAGATCCAGCGCGGAGAGGTCGGTATGGTCTCCGGTATTCCCCAAGAGCATCT
 
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JMSF009M15-           CCGCAGGAAGGTTATTATTTTCTCACCTGC                              
JMSF004M20-           CCGCAGGAAGGTTATTATTTTCTCACCTGCTCGTACAGCTAGTCAGCAAGGATCTGGAAA
rJMSF009M15+          CCGCAGGAAGGTTATTATTTTCTCACCTGCTCGTACAGCTAGTCAGCAAGGATCTGGAAA
                      ____________________________________________________________
consensus             CCGCAGGAAGGTTATTATTTTCTCACCTGCTCGTACAGCTAGTCAGCAAGGATCTGGAAA
 
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JMSF004M20-           AGTTGGAAGATGGAAAAT                                          
rJMSF009M15+          AGTTGGAAGATGGAAAATAAATTTTTTGTCAACACAGAAATGGGAAAATCCACTGATGGG
                      ____________________________________________________________
consensus             AGTTGGAAGATGGAAAATAAATTTTTTGTCAACACAGAAATGGGAAAATCCACTGATGGG
 
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rJMSF004M20+                                      AATGTTGGTGATGCTGCGCTTACTTTTGACAG
rJMSF009M15+          CTGGACATCCACAGGGGACCCATATGCGAATGTTGGTGATGCTGCGCTTACTTTTGACAG
                      ____________________________________________________________
consensus             CTGGACATCCACAGGGGACCCATATGCGAATGTTGGTGATGCTGCGCTTACTTTTGACAG
 
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rJMSF004M20+          TGAAGAAGCTGCAAAAGCATTTGCTGAAAGACANGGCTGGGAGTATACGGNGAAGAAGCC
rJMSF009M15+          TGAAGAAGCTGCAAAAGCATTTGCTGAAAGACATGGCTGGGAGTATACGGTGAAGAAGCC
                      ____________________________________________________________
consensus             TGAAGAAGCTGCAAAAGCATTTGCTGAAAGACATGGCTGGGAGTATACGGTGAAGAAGCC
 
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rJMSF004M20+          TCACACACCATTGTTAANGATCAANTCCTATGCAGNCAATTTCAAGTGGAAGGGCCNTCN
rJMSF009M15+          TCACACACCATTGTTAAAGATCAAATCCTATGCAGACAATTTCAAGTGGAAGGGCCCTCC
                      ____________________________________________________________
consensus             TCACACACCATTGTTAAAGATCAAATCCTATGCAGACAATTTCAAGTGGAAGGGCCCTCC
 
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rJMSF004M20+          TAAAACAGAAGGATGAATTATTTCTATTCTTGCTCTCTTGAAGTTCTAACCCTTTGGGTC
rJMSF009M15+          TAAAACAGAAGGATGAATTATTTCTATTCTTGCTCTCTTGAAGTTCTAACCCTTTGGGTC
                      ____________________________________________________________
consensus             TAAAACAGAAGGATGAATTATTTCTATTCTTGCTCTCTTGAAGTTCTAACCCTTTGGGTC
 
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rJMSF004M20+          CNTAAATTACTACAGCCTNTGGATCCNGTTTGTTTACCTTNTGAAGTCTCAATGCACTAT
rJMSF009M15+          CATAAATTACTACAGCCTTTGGATCCTGTTTGTTTACCTTTTGAAGTCTCAATGCACTAT
                      ____________________________________________________________
consensus             CATAAATTACTACAGCCTTTGGATCCTGTTTGTTTACCTTTTGAAGTCTCAATGCACTAT
 
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rJMSF004M20+          CCTCAGGACTAAACCCAAGATTCTATTAATAAATCGAACAGAGTTTTTNGAATAAATTCC
rJMSF009M15+          CCTCAGGACTAAACCCAAGATTCTGTTAATAAATCGAACAGAGTTTTTTGAATAAATTCC
                      ____________________________________________________________
consensus             CCTCAGGACTAAACCCAAGATTCTGTTAATAAATCGAACAGAGTTTTTTGAATAAATTCC
 
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rJMSF004M20+          TTTGGGATTTATGTATCAATCCGCAGAAGATT                            
rJMSF009M15+          TTTGGGATTTATGTATCAATCCGCAGAAGATTGTGTTTGCTATTGGTTGAACACATCAAC
                      ____________________________________________________________
consensus             TTTGGGATTTATGTATCAATCCGCAGAAGATTGTGTTTGCTATTGGTTGAACACATCAAC