Contig 012531:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF013J01Sequence700012531 (15)emb|CBI30851.3|7e-84unnamed protein product [Vitis vinifera]
JMFF044M16Sequence642000899 (14)emb|CDP06309.1|7e-107unnamed protein product [Coffea canephora]608012531 (15)emb|CBI30851.3|1e-64unnamed protein product [Vitis vinifera]
JMSF002B04Sequence342000899 (14)ref|XP_008371590.1|3e-26PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic-like [Mal740012531 (15)emb|CBI30851.3|2e-109unnamed protein product [Vitis vinifera]
JMSF009K15Sequence309000899 (14)ref|XP_008371590.1|6e-21PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic-like [Mal802012531 (15)emb|CBI30851.3|9e-108unnamed protein product [Vitis vinifera]
JMSF009P06Sequence312000899 (14)ref|XP_008371590.1|1e-25PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic-like [Mal762012531 (15)emb|CBI30851.3|2e-114unnamed protein product [Vitis vinifera]
JMSF011J14Sequence467000899 (14)ref|XP_009763087.1|5e-59PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic-like [Nic816012531 (15)emb|CBI30851.3|1e-126unnamed protein product [Vitis vinifera]
JMSF018G03Sequence259000899 (14)ref|XP_007211401.1|6e-19hypothetical protein PRUPE_ppa005228mg [Prunus persica] gb|EMJ12600.1| hypotheti736012531 (15)emb|CBI30851.3|1e-109unnamed protein product [Vitis vinifera]
JMSF019J07Sequence266000899 (14)ref|XP_008371590.1|3e-11PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic-like [Mal815012531 (15)emb|CBI30851.3|6e-116unnamed protein product [Vitis vinifera]
JMSF030D18Sequence679000899 (14)emb|CDP06309.1|6e-107unnamed protein product [Coffea canephora]754012531 (15)emb|CBI30851.3|1e-109unnamed protein product [Vitis vinifera]
JMSF033I21Sequence711000899 (14)emb|CDP06309.1|7e-116unnamed protein product [Coffea canephora]675012531 (15)emb|CBI30851.3|9e-81unnamed protein product [Vitis vinifera]
JMSF038P20Sequence687000899 (14)emb|CDP06309.1|2e-108unnamed protein product [Coffea canephora]816012531 (15)emb|CBI30851.3|3e-127unnamed protein product [Vitis vinifera]
JMSF040A06Sequence697000899 (14)emb|CDP06309.1|1e-111unnamed protein product [Coffea canephora]873012531 (15)emb|CBI30851.3|2e-143unnamed protein product [Vitis vinifera]
JMSF046L21Sequence557000899 (14)emb|CDP06309.1|2e-85unnamed protein product [Coffea canephora]764012531 (15)emb|CBI30851.3|3e-105unnamed protein product [Vitis vinifera]
JMSF051A09Sequence714000899 (14)emb|CDP06309.1|9e-116unnamed protein product [Coffea canephora]755012531 (15)emb|CBI30851.3|4e-110unnamed protein product [Vitis vinifera]
JMSF051C22Sequence681000899 (14)emb|CDP06309.1|9e-108unnamed protein product [Coffea canephora]694012531 (15)emb|CBI30851.3|1e-98unnamed protein product [Vitis vinifera]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF011J14+ ACCATGGGATAAAGACCGTGATGGTTTCGTCATGGGT
rJMSF019J07+ CATGGGATAAAGACCGTGATGGTTTCGTCATGGGT
rJMSF046L21+ CGTGATGGTTTCGTCATGGGT
rJMSF038P20+ CATGGGATAAAGACCGTGATGGTTTCGTCATGGGT
                      ____________________________________________________________
consensus ACCATGGGATAAAGACCGTGATGGTTTCGTCATGGGT
 
. : . : . : . : . : . :
rJMSF011J14+ GAA-GGAGCTGGAGTATTGGTGATGG-AAAGCNTGGAACATGCAAT-GAAACGTGGTGCA
rJMSF002B04+ AAGCNTGGAACATGCAAT-GAAACGTGGTGCA
rJMSF009P06+ GAGCTGGAGTATTGGNGATGG-AAAGCTTGGAACATGCAAT-GAAACGTGGTGCA
rJMSF018G03+ TTGGAACATGCAAT-GAAACGTGGTGCA
rJMFF013J01+ AAGCTTGGAACATGCAAT-GAAACGTGGTGCA
rJMSF019J07+ GAAGGGAGCTGGAGTATTGGTGATGG-AAAGCTTGGAACATGCAAT-GAAACGTGGTGCA
rJMSF030D18+ AAGCTTGGAACATGCAAT-GAAACGTGGTGCA
rJMSF046L21+ GAA-GGAGCTGGAGTATTGGTGATGGNAAAGCTTGGAACATGCAATGGAAACGTGGTGCA
rJMSF038P20+ GAA-GGAGCTGGAGTATTGGTGATGG-AAAGCTTGGAACATGCAAT-GAAACGTGGTGCA
rJMSF051A09+ AAAGCCTGGAACATGCAAT-GAAACGTGGTGCA
rJMSF009K15+ ACATGCAAT-GAAACGTGGTGCA
                      ____________________________________________________________
consensus GAA-GGAGCTGGAGTATTGGTGATGG-AAAGCTTGGAACATGCAAT-GAAACGTGGTGCA
 
. : . : . : . : . : . :
rJMSF011J14+ CCTATAATTGCCGAGTATCTGGGAGGTGCAGTAACTTGCGATGCTTATCACATGACTGAT
rJMSF002B04+ CCTATAATTGCCGAGTATCTGGGAGGTGCAGTAACNTGCGATGCTTATCACATGACTGAT
rJMSF051C22+ TATCTGGGAGGTGCAGTAACCTGCGATGCTTATCACATGACTGAT
rJMSF009P06+ CCTATAATTGCCGAGTATCTGGGAGGTGCAGTAACCTGCGATGCTTATCACATGACTGAT
rJMSF018G03+ CCTATAATTGCCGAGTATCTGGGAGGTGCAGTAACTTGCGATGCTTATCACATGACTGAT
rJMFF013J01+ CCTATAATTGCCGAGTATNTGGGAGGTGCAGTAACTTGCGATGCTTATCACATGACTGAT
rJMSF019J07+ CCTATAATTGCCGAGTATCTGGGAGGTGCAGTAACTTGCGATGCTTATCACATGACTGAT
rJMSF030D18+ CCTATAATTGCCGAGTATCTGGGAGGTGCAGTAACTTGCGATGCTTATCACATGACTGAT
rJMSF046L21+ CCTATAATTGCCGAGTATCTGGGAGGTGCAGTAACTTGCGATGCTTATCACATGACTGAT
rJMSF038P20+ CCTATAATTGCCGAGTATCTGGGAGGTGCAGTAACTTGCGATGCTTATCACATGACTGAT
rJMSF040A06+ GTGCAGTAACTTGCGATGCTTATCACATGACTGAT
rJMSF033I21+ ATCACATGACTGAT
rJMSF051A09+ CCTATAATTGCCGAGTATCTGGGAGGTGCAGTAACTTGCGATGCTTATCACATGACTGAT
rJMSF009K15+ CCTATAATTGCCGAGTATCTGGGAGGTGCAGTAACTTGCGATGCTTATCACATGACTGAT
                      ____________________________________________________________
consensus CCTATAATTGCCGAGTATCTGGGAGGTGCAGTAACTTGCGATGCTTATCACATGACTGAT
 
. : . : . : . : . : . :
rJMSF011J14+ CCTAGAGCTGATGGACTTGGTGTTTCTTCATGTATCCATAGTGCTCTTGAAGATGCTGGT
rJMSF002B04+ CCTAGAGCTGATGGACTTGGTGTTTCTTCATGTATCCATAGTGCTCTTGAAGATGCTGGT
rJMSF051C22+ CCTAGAGCTGATGGACTTGGTGTTTCTTCATGTATCCATAGTGCTCTTGAAGATGCTGGT
rJMSF009P06+ CCTAGAGCTGATGGACTTGGTGTTTCTTCATGTATCCATAGTGCTCTTGAAGATGCTGGT
rJMSF018G03+ CCTAGAGCTGATGGACTTGGTGTTTCTTCATGTATCCATAGTGCTCTTGAAGATGCTGGT
rJMFF013J01+ CCTAGAGCTGATGGACTTGGTGTTTCTTCATGTATCCATAGTGCTCTTGAAGATGCTG--
rJMSF019J07+ CCTAGAGCTGATGGACTTGGTGTTTCTTCATGTATCCATAGTGCTCTTGAAGATGCTGGT
rJMSF030D18+ CCTAGAGCTGATGGACTTGGTGTTTCTTCATGTATCCATAGTGCTCTTGAAGATGCTGGT
rJMSF046L21+ CCTAGAGCTGATGGACTTGGTGTTTCTTCATGTATCCATAGTGCTCTTGAAGATGCTGGT
rJMSF038P20+ CCTAGAGCTGATGGACTTGGTGTTTCTTCATGTATCCATAGTGCTCTTGAAGATGCTGGT
rJMSF040A06+ CCTAGAGCTGATGGACTTGGTGTTTCTTCATGTATCCATAGTGCTCTTGAAGATGCTGGT
rJMSF033I21+ CCTAGAGCTGATGGACTTGGNG-TTCTTCATGTATCCATAGTGCTCTTGAAGATGCTGGT
rJMSF051A09+ CCTAGAGCTGATGGACTTGGTGTTTCTTCATGTATCCATAGTGCTCTTGAAGATGCTGGT
rJMSF009K15+ CCTAGAGCTGATGGACTTGGTGTTTCTTCATGTATCCATAGTGCTCTTGAAGATGCTGGT
                      ____________________________________________________________
consensus CCTAGAGCTGATGGACTTGGTGTTTCTTCATGTATCCATAGTGCTCTTGAAGATGCTGGT
 
. : . : . : . : . : . :
rJMSF011J14+ GTATCACCTGAAGAGGTGAACTACATAAATGCTCATGCAACTTCGACTCTAGTCGGAGAT
rJMSF002B04+ GTATCACCTGAAGAGGTGAACTACATAAATGCTCATGCAACTTCGACTCTAGTCGGAGAT
rJMSF051C22+ GTATCACCTGAAGAGGTGAACTACATAAATGCTCATGCAACTTCGACTCTAGTCGGAGAT
rJMSF009P06+ GTATCACCTGAAGAGGTGAACTACATAAATGCTCATGCAACTTCGACTCTAGTCGGAGAT
rJMSF018G03+ GTATCACCTGAAGAGGTGAACTACATAAATGCTCATGCAACTTCGACTCTAGTCGGAGAT
rJMFF013J01+ GTATCACCTGAAGAGGTGAACTACATAAATGCTCATGCAACTTCGACTCTAGTCGGAGAT
rJMSF019J07+ GTATCACCTGAAGAGGTGAACTACATAAATGCTCATGCAACTTCGACTCTAGTCGGAGAT
rJMSF030D18+ GTATCACCTGAAGAGGTGAACTACATAAATGCTCATGCAACTTCGACTCTAGTCGGAGAT
rJMSF046L21+ GTATCACCTGAAGAGGTGAACTACATAAATGCTCATGCAACTTCGACTCTAGTCGGAGAT
rJMSF038P20+ GTATCACCTGAAGAGGTGAACTACATAAATGCTCATGCAACTTCGACTCTAGTCGGAGAT
rJMSF040A06+ GTATCACCTGAAGAGGTGAACTACATAAATGCTCATGCAACTTCGACTCTAGTCGGAGAT
rJMSF033I21+ GTATCACCTGAAGAGGTGAACTACATAAATGCTCATGCAACTTCGACTCTAGTCGGAGAT
rJMSF051A09+ GTATCACCTGAAGAGGTGAACTACATAAATGCTCATGCAACTTCGACTCTAGTCGGAGAT
rJMFF044M16+ CATGCAACTTCGACTCTAGTCGGAGAT
rJMSF009K15+ GTATCACCTGAAGAGGTGAACTACATAAATGCTCATGCAACTTCGACTCTAGTCGGAGAT
                      ____________________________________________________________
consensus GTATCACCTGAAGAGGTGAACTACATAAATGCTCATGCAACTTCGACTCTAGTCGGAGAT
 
. : . : . : . : . : . :
rJMSF011J14+ TTAGCCGAGGTCAATGCTGTTAAGAAGGTATTCAAGGACACTTCAGAGATCAAAATGAAT
rJMSF002B04+ TTAGCCGAGGTCAATGCTGTTAAGAAGGTATTCAAGGACACTTCAGAGATCAAAATGAAT
rJMSF051C22+ TTAGCCGAGGTCAATGCTGTTAAGAAGGTATTCAAGGACACTTCAGAGATCAAAATGAAT
rJMSF009P06+ TTAGCCGAGGTCAATGCTGTTAAGAAGGTATTCAAGGACACTTCAGAGATCAAAATGAAT
rJMSF018G03+ TTAGCCGAGGTCAATGCTGTTAAGAAGGTATTCAAGGACACTTCAGAGATCAAAATGAAT
rJMFF013J01+ TTAGCCGAGGTCAATGCTGTTAAGAAGGTATTCAAGGACACTTCAGAGATCAAAATGAAT
rJMSF019J07+ TTAGCCGAGGTCAATGCTGTTAAGAAGGTATTCAAGGACACTTCAGAGATCAAAATGAAT
rJMSF030D18+ TTAGCCGAGGTCAATGCTGTTAAGAAGGTATTCAAGGACACTTCAGAGATCGAAATGAAT
rJMSF046L21+ TTAGCCGAGGTCAATGCTGTTAAGAAGGTATTCAAGGACACTTCAGAGATCAAAATGAAT
rJMSF038P20+ TTAGCCGAGGTCAATGCTGTTAAGAAGGTATTCAGGGACACTTCAGAGATCAAAATGAAT
rJMSF040A06+ TTAGCCGAGGTCAATGCTGTTAAGAAGGTATTCAAGGACACTTCAGAGATCAAAATGAAT
rJMSF033I21+ TTAGCCGAGGTCAATGCTGTTAAGAAGGTATTCAAGGACACTTCAGAGATCAAAATGAAT
rJMSF051A09+ TTAGCCGAGGTCAATGCTGTTAAGAAGGTATTCAAGGACACTTCAGAGATCAAAATGAAT
rJMFF044M16+ TTAGCCGAGGTCAATGCTGTTAAGAAGGTATTCAAGGACACTTCAGAGATCAAAATGAAT
rJMSF009K15+ TTAGCCGAGGTCAATGCTGTTAAGAAGGTATTCAAGGACACTTCAGAGATCAAAATGAAT
                      ____________________________________________________________
consensus TTAGCCGAGGTCAATGCTGTTAAGAAGGTATTCAAGGACACTTCAGAGATCAAAATGAAT
 
. : . : . : . : . : . :
rJMSF011J14+ GCTACCAAGTCCATGATCGGACACTGCCTGGGTGCTGCTGGTGGCCTGGAAGCTATTGCA
rJMSF002B04+ GCTACCAAGTCCATGATCGGACACTGCCTGGGTGCTGCTGGTGGCCTGGAAGCTATTGCA
rJMSF051C22+ GCTACCAAGTCCATGATCGGACACTGCCTGGGTGCTGCTGGTGGCCTGGAAGCTATTGCA
rJMSF009P06+ GCTACCAAGTCCATGATCGGACACTGCCTGGGTGCTGCTGGTGGCCTGGAAGCTATTGCA
rJMSF018G03+ GCTACCAAGTCCATGATCGGACACTGCCTGGGTGCTGCTGGTGGCCTGGAAGCTATTGCA
rJMFF013J01+ GCTACCAAGTCCATGATCGGACACTGCCTGGGTGCTGCTGGTGGCCTGGAAGCTATTGCA
rJMSF019J07+ GCTACCAAGTCCATGATCGGACACTGCCTGGGTGCTGCTGGTGGCCTGGAAGCTATTGCA
rJMSF030D18+ GCTACCAAGTCCATGATCGGACACTGCCTGGGTGCTGCTGGTGGCCTGGAAGCTATTGCA
rJMSF046L21+ GCTACCAAGTCCATGATCGGACACTGCCTGGGTGCTGCTGGTGGCCTGGAAGCTATTGCA
rJMSF038P20+ GCTACCAAGTCCATGATCGGACACTGCCTGGGTGCTGCTGGTGGCCTGGAAGCTATTGCA
rJMSF040A06+ GCTACCAAGTCCATGATCGGACACTGCCTGGGTGCTGCTGGTGGCCTGGAAGCTATTGCA
rJMSF033I21+ GCTACCAAGTCCATGATCGGACACTGCCTGGGTGCTGCTGGTGGCCTGGAAGCTATTGCA
rJMSF051A09+ GCTACCAAGTCCATGATCGGACACTGCCTGGGTGCTGCTGGTGGCCTGGAAGCTATTGCA
rJMFF044M16+ GCTACCAAGTCCATGATCGGACACTGCCTGGGTGCTGCTGGTGGCCTGGAAGCTATTGCA
rJMSF009K15+ GCTACCAAGTCCATGATCGGACACTGCCTGGGTGCTGCTGGTGGCCTGGAAGCTATTGCA
                      ____________________________________________________________
consensus GCTACCAAGTCCATGATCGGACACTGCCTGGGTGCTGCTGGTGGCCTGGAAGCTATTGCA
 
. : . : . : . : . : . :
rJMSF011J14+ ACGGTGAAAGCCATTACAACTGGGTGGCTACATCCTACAATTAACCAATTTAACCCCGAG
rJMSF002B04+ ACGGTGAAAGCCATTACAACTGGGTGGCTACATCCTACAATTAACCAATTTAACCCCGAG
rJMSF051C22+ ACGGTGAAAGCCATTACAACTGGGTGGCTACATCCTACAATTAACCAATTTAACCCCGAG
rJMSF009P06+ ACGGTGAAAGCCATTACAACTGGGTGGCTACATCCTACAATTAACCAATTTAACCCCGAG
rJMSF018G03+ ACGGTGAAAGCCATTACAACTGGGTGGCTACATCCTACAATTAACCAATTTAACCCCGAG
rJMFF013J01+ ACGGTGAAAGCCATTACAACTGGGTGGCTACATCCTACAATTAACCAATTTAACCCCGAG
rJMSF019J07+ ACGGTGAAAGCCATTACAACTGGGTGGCTACATCCTACAATTAACCAATTTAACCCCGAG
rJMSF030D18+ ACGGTGAAAGCCATTACAACTGGGTGGCTACATCCTACAATTAACCAATTTAACCCCGAG
rJMSF046L21+ ACGGTGAAAGCCATTACAACTGGGTGGCTACATCCTACAATTAACCAATTTAACCCCGAG
rJMSF038P20+ ACGGTGAAAGCCATTACAACTGGGTGGCTACATCCTACAATTAACCAATTTAACCCCGAG
rJMSF040A06+ ACGGTGAAAGCCATTACAACTGGGTGGCTACATCCTACAATTAACCAATTTAACCCCGAG
rJMSF033I21+ ACGGTGAAAGCCATTACAACTGGGTGGCTACATCCTACAATTAACCAATTTAACCCCGAG
rJMSF051A09+ ACGGTGAAAGCCATTACAACTGGGTGGCTACATCCTACAATTAACCAATTTAACCCCGAG
rJMFF044M16+ ACGGTGAAAGCCATTACAACTGGGTGGCTACATCCTACAATTAACCAATTTAACCCCGAG
rJMSF009K15+ ACGGTGAAAGCCATTACAACTGGGTGGCTACATCCTACAATTAACCAATTTAACCCCGAG
                      ____________________________________________________________
consensus ACGGTGAAAGCCATTACAACTGGGTGGCTACATCCTACAATTAACCAATTTAACCCCGAG
 
. : . : . : . : . : . :
rJMSF011J14+ CCCTCAGTGGAGTTTGACACAGTCCCAAACAAGAAACAGGAGCATGAAATCAATGTTGCC
rJMSF002B04+ CCCTCAGTGGAGTTTGACACAGTCCCAAACAAGAAACAGGAGCATGAAATCAATGTTGCC
rJMSF051C22+ CCCTCAGTGGAGTTTGACACAGTCCCAAACAAGAAACAGGAGCATGAAATCAATGTTGCC
rJMSF009P06+ CCCTCAGTGGAGTTTGACACAGTCCCAAACAAGAAACAGGAGCATGAAATCAATGTTGCC
rJMSF018G03+ CCCTCAGTGGAGTTTGACACAGTCCCAAACAAGAAACAGGAGCATGAAATCAATGTTGCC
rJMFF013J01+ CCCTCAGTGGAGTTTGACACAGTCCCAAACAAGAAACAGGAGCATGAAATCAATGTTGCC
rJMSF019J07+ CCCTCAGTGGAGTTTGACACAGTCCCAAACAAGAAACAGGAGCATGAAATCAATGTTGCC
rJMSF030D18+ CCCTCAGTGGAGTTTGACACAGTCCCAAACAAGAAACAGGAGCATGAAATCAATGTTGCC
rJMSF046L21+ CCCTCAGTGGAGTTTGACACAGTCCCAAACAAGAAACAGGAGCATGAAATCAATGTTGCC
rJMSF038P20+ CCCTCAGTGGAGTTTGACACAGTCCCAAACAAGAAACAGGAGCATGAAATCAATGTTGCC
rJMSF040A06+ CCCTCAGTGGAGTTTGACACAGTCCCAAACAAGAAACAGGAGCATGAAATCAATGTTGCC
rJMSF033I21+ CCCTCAGTGGAGTTTGACACAGTCCCAAACAAGAAACAGGAGCATGAAATCAATGTTGCC
rJMSF051A09+ CCCTCAGTGGAGTTTGACACAGTCCCAAACAAGAAACAGGAGCATGAAATCAATGTTGCC
rJMFF044M16+ CCCTCAGTGGAGTTTGACACAGTCCCAAACAAGAAACAGGAGCATGAAATCAATGTTGCC
rJMSF009K15+ CCCTCAGTGGAGTTTGACACAGTCCCAAACAAGAAACAGGAGCATGAAATCAATGTTGCC
                      ____________________________________________________________
consensus CCCTCAGTGGAGTTTGACACAGTCCCAAACAAGAAACAGGAGCATGAAATCAATGTTGCC
 
. : . : . : . : . : . :
rJMSF011J14+ ATTTCAAATTCATTTGGCTTTGGTGGACACAACTCGGTCGTAGCCTTCTCTGCATTCAAG
rJMSF002B04+ ATTTCAAATTCATTTGGCTTTGGTGGACACAACTCGGTCGTAGCCTTCTCTGCATTCAAG
rJMSF051C22+ ATTTCAAATTCATTTGGCTTTGGTGGACACAACTCGGTCGTAGCCTTCTCTGCATTCAAG
rJMSF009P06+ ATTTCAAATTCATTTGGCTTTGGTGGACACAACTCGGTCGTAGCCTTCTCTGCATTCAAG
rJMSF018G03+ ATTTCAAATTCATTTGGCTTTGGTGGACACAACTCGGTCGTAGCCTTCTCTGCATTCAAG
rJMFF013J01+ ATTTCAAATTCATTTGGCTTTGGTGGACACAACTCGGTCGTAGCCTTCTCTGCATTCAAG
rJMSF019J07+ ATTTCAAATTCATTTGGCTTTGGTGGACACAACTCGGTCGTAGCCTTCTCTGCATTCAAG
rJMSF030D18+ ATTTCAAATTCATTTGGCTTTGGTGGACACAACTCGGTCGTAGCCTTCTCTGCATTCAAG
rJMSF046L21+ ATTTCAAATTCATTTGGCTTTGGTGGACACAACTCGGTCGTAGCCTTCTCTGCATTCAAG
rJMSF038P20+ ATTTCAAATTCATTTGGCTTTGGTGGACACAACTCGGTCGTAGCCTTCTCTGCATTCAAG
rJMSF040A06+ ATTTCAAATTCATTTGGCTTTGGTGGACACAACTCGGTCGTAGCCTTCTCTGCATTCAAG
rJMSF033I21+ ATTTCAAATTCATTTGGCTTTGGTGGACACAACTCGGTCGTAGCCTTCTCTGCATTCAAG
rJMSF051A09+ ATTTCAAATTCATTTGGCTTTGGTGGACACAACTCGGTCGTAGCCTTCTCTGCATTCAAG
rJMFF044M16+ ATTTCAAATTCATTTGGCTTTGGTGGACACAACTCGGTCGTAGCCTTCTCTGCATTCAAG
rJMSF009K15+ ATTTCAAATTCATTTGGCTTTGGTGGACACAACTCGGTCGTAGCCTTCTCTGCATTCAAG
                      ____________________________________________________________
consensus ATTTCAAATTCATTTGGCTTTGGTGGACACAACTCGGTCGTAGCCTTCTCTGCATTCAAG
 
. : . : . : . : . : . :
rJMSF011J14+ CCTTGATTGTTTTAGCAAACTAGCAGCCTTACACACACTGGAGACCTAACCAAAATCTCG
rJMSF002B04+ CCTTGATTGTTTTAGCAAACTAGCAGCCTTACACACACTGGAGACCTAACCAAAATCTCG
rJMSF051C22+ CCTTGATTGTTTTAGCAAACTAGCAGCCTTACACACACTGGAGACCTAACCAAAATCTCG
rJMSF009P06+ CCTTGATTGTTTTAGCAAACTAGCAGCCTTACACACACTGGAGACCTAACCAAAATCTCG
rJMSF018G03+ CCTTGATTGTTTTAGCAAACTAGCAGCCTTACACACACTGGAGACCTAACCAAAATCTCG
rJMFF013J01+ CCTTGATTGTTTTAGCAAACTAGCAGCCTTACACACACTGGAGACCTAACCAAAATCTCG
rJMSF019J07+ CCTTGATTGTTTTAGCAAACTAGCAGCCTTACACACACTGGAGACCTAACCAAAATCTCG
rJMSF030D18+ CCTTGATTGTTTTAGCAAACTAGCAGCCTTACACACACTGGAGACCTAACCAAAATCTCG
rJMSF046L21+ CCTTGATTGTTTTAGCAAACTAGCAGCCTTACACACACTGGAGACCTAACCAAAATCTCG
rJMSF038P20+ CCTTGATTGTTTTAGCAAACTAGCAGCCTTACACACACTGGAGACCTAACCAAAATCTCG
rJMSF040A06+ CCTTGATTGTTTTAGCAAACTAGCAGCCTTACACACACTGGAGACCTAACCAAAATCTCG
rJMSF033I21+ CCTTGATTGTTTTAGCAAACTAGCAGCCTTACACACACTGGAGACCTAACCAAAATCTCG
rJMSF051A09+ CCTTGATTGTTTTAGCAAACTAGCAGCCTTACACACACTGGAGACCTAACCAAAATCTCG
rJMFF044M16+ CCTTGATTGTTTTAGCAAACTAGCAGCCTTACACACACTGGAGACCTAACCAAAATCTCG
rJMSF009K15+ CCTTGATTGTTTTAGCAAACTAGCAGCCTTACACACACTGGAGACCTAACCAAAATCTCG
                      ____________________________________________________________
consensus CCTTGATTGTTTTAGCAAACTAGCAGCCTTACACACACTGGAGACCTAACCAAAATCTCG
 
. : . : . : . : . : . :
rJMSF011J14+ CATAGAGGCATCTTCTTTTGCTCTGCAATTTGCTGCACGGGCAGAGGCACGGAGCTATGA
rJMSF002B04+ CATAGAGGCATCTTCTTTTGCTCTGCAATTTGCTGCACGGGCAGAGGCACGGAGCTATGA
rJMSF051C22+ CATAGAGGCATCTTCTTTTGCTCTGCAATTTGCTGCACGGGCAGAGGCACGGAGCTATGA
rJMSF009P06+ CATAGAGGCATCTTCTTTTGCTCTGCAATTTGCTGCACGGGCAGAGGCACGGAGCTATGA
rJMSF018G03+ CATAGAGGCATCTTCTTTTGCTCTGCAATTTGCTGCACGGGCAGAGGCACGGAGCTATGA
rJMFF013J01+ CATAGAGGCATCTTCTTTTGCTCTGCAATTTGCTGCACGGGCAGAGGCACGGAGCTATGA
rJMSF019J07+ CATAGAGGCATCTTCTTTTGCTCTGCAATTTGCTGCACGGGCAGAGGCACGGAGCTATGA
rJMSF030D18+ CATAGAGGCATCTTCTTTTGCTCTGCAATTTGCTGCACGGGCAGAGGCACGGAGCTATGA
rJMSF046L21+ CATAGAGGCATCTTCTTTTGCTCTGCAATTTGCTGCACGGGCAGAGGCACGGAGCTATGA
rJMSF038P20+ CATAGAGGCATCTTCTTTTGCTCTGCAATTTGCTGCACGGGCAGAGGCACGGAGCTATGA
rJMSF040A06+ CATAGAGGCATCTTCTTTTGCTCTGCAATTTGCTGCACGGGCAGAGGCACGGAGCTATGA
rJMSF033I21+ CATAGAGGCATCTTCTTTTGCTCTGCAATTTGCTGCACGGGCAGAGGCACGGAGCTATGA
rJMSF051A09+ CATAGAGGCATCTTCTTTTGCTCTGCAATTTGCTGCACGGGCAGAGGCACGGAGCTATGA
rJMFF044M16+ CATAGAGGCATCTTCTTTTGCTCTGCAATTTGCTGCACGGGCAGAGGCACGGAGCTATGA
rJMSF009K15+ CATAGAGGCATCTTCTTTTGCTCTGCAATTTGCTGCACGGGCAGAGGCACGGAGCTATGA
                      ____________________________________________________________
consensus CATAGAGGCATCTTCTTTTGCTCTGCAATTTGCTGCACGGGCAGAGGCACGGAGCTATGA
 
. : . : . : . : . : . :
rJMSF011J14+ TTTGCTATTGTTGTTACGTGTAATAATTTTGGGTTTTAGCTCTTCATTACAAGACATCTC
rJMSF002B04+ TTTGCTATTGTTGTTACGTGTAATAATTTTGGGTTTTAGCTCTTCATTACAAGACATCTC
rJMSF051C22+ TTTGCTATTGTTGTTACGTGTAATAATTTTGGGTTTTAGCTCTTCATTACAAGACATCTC
rJMSF009P06+ TTTGCTATTGTTGTTACGTGTAATAATTTTGGGTTTTAGCTCTTCATTACAAGACATCTC
rJMSF018G03+ TTTGCTATTGTTGTTACGTGTAATAATTTTGGGTTTTAGCTCTTCATTACAAGACATCTC
rJMFF013J01+ TTTGCTATTGTTGTTACGTGTAATAATTTTGGGTTTTAGCTCTTCATTACAAGACATCTC
rJMSF019J07+ TTTGCTATTGTTGTTACGTGTAATAATTTTGGGTTTTAGCTCTTCATTACAAGACATCTC
rJMSF030D18+ TTTGCTATTGTTGTTACGTGTAATAATTTTGGGTTTTAGCTCTTCATTACAAGACATCTC
rJMSF046L21+ TTTGCTATTGTTGTTACGTGTAATAATTTTGGGTTTTAGCTCTTCATTACAAGACATCTC
rJMSF038P20+ TTTGCTATTGTTGTTACGTGTAATAATTTTGGGTTTTAGCTCTTCATTACAAGACATCTC
rJMSF040A06+ TTTGCTATTGTTGTTACGTGTAATAATTTTGGGTTTTAGCTCTTCATTACAAGACATCTC
rJMSF033I21+ TTTGCTATTGTTGTTACGTGTAATAATTTTGGGTTTTAGCTCTTCATTACAAGACATCTC
rJMSF051A09+ TTTGCTATTGTTGTTACGTGTAATAATTTTGGGTTTTAGCTCTTCATTACAAGACATCTC
rJMFF044M16+ TTTGCTATTGT--TTACGTGTAATAATTTTGGGTTTTAGCTCTTCATTACAAGACATCTC
rJMSF009K15+ TTTGCTATTGTTGTTACGTGTAATAATTTTGGGTTTTAGCTCTTCATTACAAGACATCTC
                      ____________________________________________________________
consensus TTTGCTATTGTTGTTACGTGTAATAATTTTGGGTTTTAGCTCTTCATTACAAGACATCTC
 
. : . : . : . : . : . :
rJMSF011J14+ CCATAATATTTTTGTTTTTAGAATTTGCATTCTGGTAAGTAACTCTTTTGTTCTACGGGA
rJMSF002B04+ CCATAATATTTTTGTTTTTAGAATTTGCATTCTGGTAAGTAACTCTTTT
rJMSF051C22+ CCATAATATTTTTGTTTTTAGAATTTGCATTCTGGTAAGTAACTCTTTT
rJMSF009P06+ CCATAATATTTTTGTTTTTAGAATTTGCATTCTGGTAAGTAACTCTTTT
rJMSF018G03+ CCATAATATTTTTGTTTTTAGAATTTGCATTCTGGTAAGTAACTCTTTT
rJMFF013J01+ CCATAATATTT
rJMSF019J07+ CCATAATATTTTTGTTTTTAGAATTTGCATTCTGGTAAGTAACTCTTTTGTTCTACGGGA
rJMSF030D18+ CCATAATATTTTTGTTTTTAGAATTTGCATTCTGGTAAGTAACTCTTTTGTTCTACGGGA
rJMSF046L21+ CCATAATATTTTTGTTTTTAGAAT
rJMSF038P20+ CCATAATATTTTTGTTTTTAGAATTTGCATTCTGGTAAGTAACTCTTTTGTTCTACGGGA
rJMSF040A06+ CCATAATATTTTTGTTTTTAGAATTTGCATTCTGGTAAGTAACTCTTTTGTTCTACGGGA
rJMSF033I21+ CCATAATATTTTTGTTTTTAGAATTTGCATTCTGGTAAGTAACTCTTTTGTTCTACGGGA
rJMSF051A09+ CCATAATATTTTTGTTTTTAGAATTTGCATTCTGGTAAGTAACTCTTTTGTTCTACGGGA
rJMFF044M16+ CCATAATATTTTTGTTTTTAGAATTTGCATTCTGGTAAGTAACTCTTTTGTTCTACGGGA
rJMSF009K15+ CCATAATATTTTTGTTTTTAGAATTTGCATTCTGGTAAGTAACTCTTTTGTTCTACGGGA
                      ____________________________________________________________
consensus CCATAATATTTTTGTTTTTAGAATTTGCATTCTGGTAAGTAACTCTTTTGTTCTACGGGA
 
. : . : . : . : . : . :
rJMSF011J14+ CC
rJMSF019J07+ CC
rJMSF030D18+ CCT
rJMSF038P20+ CCT
rJMSF040A06+ CCT
rJMSF033I21+ CC
rJMSF051A09+ CCT
rJMFF044M16+ CCTTATAGCTATATAATGGTGAAATATCTATCTGTTTTGAG
rJMSF009K15+ CCTTATAGCTATATAATGGTGAAATATCTATCTGTTTTGAGTCATGCATGAGCTGAAGAG
                      ____________________________________________________________
consensus CCTTATAGCTATATAATGGTGAAATATCTATCTGTTTTGAGTCATGCATGAGCTGAAGAG