| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF016L01 | Sequence | 261 | 012527 (4) | gb|KJB42105.1| | 1e-42 | hypothetical protein B456_007G137300 [Gossypium raimondii] gb|KJB42107.1| hypoth | |||||
| JMFF016L02 | Sequence | 322 | 006101 (3) | 131 | 012527 (4) | gb|KJB42103.1| | 9e-14 | hypothetical protein B456_007G137300 [Gossypium raimondii] | |||
| JMSF009A22 | Sequence | 318 | 012527 (4) | ref|XP_010255993.1| | 4e-12 | PREDICTED: ribosome-recycling factor, chloroplastic [Nelumbo nucifera] | 764 | 012527 (4) | ref|XP_011079860.1| | 4e-114 | PREDICTED: ribosome-recycling factor, chloroplastic [Sesamum indicum] |
This contig is upended
. : . : . : . : . : . :
JMSF009A22- GCATTTAGTCGAACAAGTTTCGAGCATAAAATGGCAATGACT
____________________________________________________________
consensus GCATTTAGTCGAACAAGTTTCGAGCATAAAATGGCAATGACT
. : . : . : . : . : . :
JMSF009A22- TTCTCGCCGGCGGCTCATGTTCGTTCGCTCTACCCACAACGACCTGCCAACAAGCCTAAC
____________________________________________________________
consensus TTCTCGCCGGCGGCTCATGTTCGTTCGCTCTACCCACAACGACCTGCCAACAAGCCTAAC
. : . : . : . : . : . :
JMSF009A22- TCTTCCAAACTCCTCCTTTCCCTTCGAGATGGTTATTCCACTTCAGCAAATGTTGCTTCA
____________________________________________________________
consensus TCTTCCAAACTCCTCCTTTCCCTTCGAGATGGTTATTCCACTTCAGCAAATGTTGCTTCA
. : . : . : . : . : . :
JMSF009A22- TTGAGCGCGGCGTCGAATTATGTGAAATTGCAAATTTGTGCGAGGGAGCTTGCTATGAAG
____________________________________________________________
consensus TTGAGCGCGGCGTCGAATTATGTGAAATTGCAAATTTGTGCGAGGGAGCTTGCTATGAAG
. : . : . : . : . : . :
JMSF009A22- CCTCTTGTCAAGCTATCAGGGAAGCAGAGAACTGGAGTGTTTAGGTGTGCAACCATAGAA
rJMSF009A22+ GGGAAGCAGAGAACTGGAGTGTTTAGGTGTGCAACCATAGAA
____________________________________________________________
consensus CCTCTTGTCAAGCTATCAGGGAAGCAGAGAACTGGAGTGTTTAGGTGTGCAACCATAGAA
. : . : . : . : . : . :
JMSF009A22- GAAATAGAAGCTGAAAAATCTTTTATTGAGGCAGAT
rJMFF016L01+ ATTGAGGCAGATGTTAAAGAAAGGATGGAAAAGACT
rJMSF009A22+ GAAATAGAAGCTGAAAAATCTTTTATTGAGGCAGATGTTAAAGAAAGGATGGAAAAGACT
____________________________________________________________
consensus GAAATAGAAGCTGAAAAATCTTTTATTGAGGCAGATGTTAAAGAAAGGATGGAAAAGACT
. : . : . : . : . : . :
rJMFF016L01+ ATTGAGAATGTTAAGTCCAATTTCAACTCTATAAGGACAGGGAGAGCTAACCCTGCAATA
rJMSF009A22+ ATTGAGAATGTTAAGTCCAATTTCAACTCTATAAGGACAGGGAGAGCTAACCCTGCAATA
____________________________________________________________
consensus ATTGAGAATGTTAAGTCCAATTTCAACTCTATAAGGACAGGGAGAGCTAACCCTGCAATA
. : . : . : . : . : . :
rJMFF016L01+ TTGGATAAAGTTGAGGTGGAGTATTATGGTACTCCAGTCAGCTTGAAGAGCATAGCTCAA
rJMSF009A22+ TTGGATAAAGTTGAGGTGGAGTATTATGGTACTCCAGTCAGCTTGAAGAGCATAGCTCAA
____________________________________________________________
consensus TTGGATAAAGTTGAGGTGGAGTATTATGGTACTCCAGTCAGCTTGAAGAGCATAGCTCAA
. : . : . : . : . : . :
rJMFF016L01+ ATTAGCACTCCTGATGCAAGTTCTCTCCCTGGTACAGCCTATGACAAATCCAGCCTAAAA
rJMSF009A22+ ATTAGCACTCCTGATGCAAGTTCTCTCCTGGTACAGCCCTATGACAAATCCAGCCTAAAA
____________________________________________________________
consensus ATTAGCACTCCTGATGCAAGTTCTCTCCTTGTTCCGGCCTATGACAAATCCAGCCTAAAA
. : . : . : . : . : . :
rJMFF016L01+ GCTATAGAGAAGGCCATTGTCACCTCTGATCTTGGTATGACTCCT
rJMFF016L02+ CTGATGGAGAA
rJMSF009A22+ GCTATAGAGAAGGCCATTGTCACCTCTGATCTTGGTATGACTCCTAATTCTGATGGAGAA
____________________________________________________________
consensus GCTATAGAGAAGGCCATTGTCACCTCTGATCTTGGTATGACTCCTAATTCTGATGGAGAA
. : . : . : . : . : . :
rJMFF016L02+ GTGATANGATNAGCTCTCCCTCANCNGACAGCTGAAAGGAGGAAGGAGTTGTCAAAAGTT
rJMSF009A22+ GTGATAAGATTAGCTCTCCCTCAACTGACAGCTGAAAGGAGGAAGGAGTTGTCAAAAGTT
____________________________________________________________
consensus GTGATAAGATTAGCTCTCCCTCAACTGACAGCTGAAAGGAGGAAGGAGTTGTCAAAAGTT
. : . : . : . : . : . :
rJMFF016L02+ NTGGCCAAGCAGGCTGAGGAAGGAAAGGTAGCTATTAGGAATATAAGAAGGGATGCCTTG
rJMSF009A22+ GTGGCCAAGCAGGCTGAGGAAGGAAAGGTAGCTATTAGGAATATAAGAAGGGATGCCTTG
____________________________________________________________
consensus GTGGCCAAGCAGGCTGAGGAAGGAAAGGTAGCTATTAGGAATATAAGAAGGGATGCCTTG
. : . : . : . : . : . :
rJMSF009A22+ AAATCCTATGAAAAACTTGAGAAGGAGAAAAAGCTATCTGAGGACAATGTAAAGGATCTG
____________________________________________________________
consensus AAATCCTATGAAAAACTTGAGAAGGAGAAAAAGCTATCTGAGGACAATGTAAAGGATCTG
. : . : . : . : . : . :
rJMSF009A22+ TCTAGTGATTTGCAGAAAGTGACTGATGAGTACATGAAGAAAATTGATAGTATCTACAAG
____________________________________________________________
consensus TCTAGTGATTTGCAGAAAGTGACTGATGAGTACATGAAGAAAATTGATAGTATCTACAAG
. : . : . : . : . : . :
rJMSF009A22+ CAAAAGGAGAAGGAGTTGTTGACAGTTTAGAAGCCGGTTTTGTACAAGATGTAAATTGAG
____________________________________________________________
consensus CAAAAGGAGAAGGAGTTGTTGACAGTTTAGAAGCCGGTTTTGTACAAGATGTAAATTGAG
. : . : . : . : . : . :
rJMSF009A22+ TTCTGCTGCAAATGTACTTTTCCCGATATCTGAGTGCATGTTGAGTAATTGAGCGTGTTT
____________________________________________________________
consensus TTCTGCTGCAAATGTACTTTTCCCGATATCTGAGTGCATGTTGAGTAATTGAGCGTGTTT
. : . : . : . : . : . :
rJMSF009A22+ GTGTTTCAAATTGATAAATTTGTACACTTGTTTTCAAAATTTTAATGATAAAGGGGGGCG
____________________________________________________________
consensus GTGTTTCAAATTGATAAATTTGTACACTTGTTTTCAAAATTTTAATGATAAAGGGGGGCG