Contig 012525:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF008N09Sequence294002432 (5)729012525 (4)ref|XP_004232810.1|7e-73PREDICTED: ATP-dependent zinc metalloprotease FTSH 12, chloroplastic [Solanum l
JMSF013G19Sequence262002432 (5)658012525 (4)ref|XP_004232810.1|3e-70PREDICTED: ATP-dependent zinc metalloprotease FTSH 12, chloroplastic [Solanum l
JMSF044M13Sequence748002432 (5)ref|XP_009593960.1|7e-45PREDICTED: ATP-dependent zinc metalloprotease FTSH 12, chloroplastic [Nicotiana777012525 (4)ref|XP_004232810.1|2e-86PREDICTED: ATP-dependent zinc metalloprotease FTSH 12, chloroplastic [Solanum l
JMSF045G22Sequence720002432 (5)ref|XP_009593960.1|9e-38PREDICTED: ATP-dependent zinc metalloprotease FTSH 12, chloroplastic [Nicotiana749012525 (4)ref|XP_004232810.1|1e-86PREDICTED: ATP-dependent zinc metalloprotease FTSH 12, chloroplastic [Solanum l

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF044M13+ TAGCTCCATGGT
                      ____________________________________________________________
consensus TAGCTCCATGGT
 
. : . : . : . : . : . :
rJMSF044M13+ GGGCGTTGTGCTGAACGAATTGTATTTTGGTGATGATATTACTGATGGAGGCACAGATGA
rJMSF045G22+ TTTGGTGATGATATTACTGATGGAGGCACAGATGA
                      ____________________________________________________________
consensus GGGCGTTGTGCTGAACGAATTGTATTTTGGTGATGATATTACTGATGGAGGCACAGATGA
 
. : . : . : . : . : . :
rJMSF044M13+ TATGGAAAAGATCACAAAGATTGCTCGAGAAATGGTGATAAGTCCTAGGAACTCTAGGTT
rJMSF045G22+ TATGGAAAAGATCACAAAGATTGCTCGAGAAATGGTGATAAGTCCTAGGAACTCTAGGTT
rJMSF013G19+ CTAGGTT
rJMSF008N09+ CTAGGTT
                      ____________________________________________________________
consensus TATGGAAAAGATCACAAAGATTGCTCGAGAAATGGTGATAAGTCCTAGGAACTCTAGGTT
 
. : . : . : . : . : . :
rJMSF044M13+ GGGGCTTACTGCTTTGACAAAGAAAGTAGGGTTGGGTGATCGACCGGATGATCCTGATGG
rJMSF045G22+ GGGGCTTACTGCTTTGACAAAGAAAGTAGGGTTGGGTGATCGACCGGATGATCCTGATGG
rJMSF013G19+ GGGGCTTACTGCTTTGACAAAGAAAGTAGGGTTGGGTGATCGACCGGATGATCCTGATGG
rJMSF008N09+ GGGGCTTACTGCTTTGACAAAGAAAGTAGGGTTGGGTGATCGACCGGATGATCCTGATGG
                      ____________________________________________________________
consensus GGGGCTTACTGCTTTGACAAAGAAAGTAGGGTTGGGTGATCGACCGGATGATCCTGATGG
 
. : . : . : . : . : . :
rJMSF044M13+ TGAGATAATAAAATATAAGTGGGATGATCCATATGTAATTCCTGCGAATATGACAGTTGA
rJMSF045G22+ TGAGATAATAAAATATAAGTGGGATGATCCATATGTAATTCCTGCGAATATGACAGTTGA
rJMSF013G19+ TGAGATAATAAAATATAAGTGGGATGATCCATATGTAATTCCTGCGAATATGACAGTTGA
rJMSF008N09+ TGAGATAATAAAATATAAGTGGGATGATCTATATGTAATTCCTGCGAATATGACAGTTGA
                      ____________________________________________________________
consensus TGAGATAATAAAATATAAGTGGGATGATCCATATGTAATTCCTGCGAATATGACAGTTGA
 
. : . : . : . : . : . :
rJMSF044M13+ AGTATCTGAACTATTTACTCGGGAGTTGACAAGGTACATTGAAGAGACAGAAGAGCTTGC
rJMSF045G22+ AGTATCTGAACTATTTACTCGGGAGTTGACAAGGTACATTGAAGAGACAGAAGAGCTTGC
rJMSF013G19+ AGTATCTGAACTATTTACTCGGGAGTTGACAAGGTACATTGAAGAGNCAGAAGAGCTTGC
rJMSF008N09+ AGTATCTGAACTATTTACTCGGGAGTTGACAAGGTACATTGAAGAGACAGAAGAGCTTGC
                      ____________________________________________________________
consensus AGTATCTGAACTATTTACTCGGGAGTTGACAAGGTACATTGAAGAGACAGAAGAGCTTGC
 
. : . : . : . : . : . :
rJMSF044M13+ AATGAAGGGGTTGATGGCCAACCGGCATTTTCTCGATATAATTGTGAATGAGCTTCTAGA
rJMSF045G22+ AATGAAGGGGTTGATGGCCAACCGGCATTTTCTCGATATAATTGTGAATGAGCTTCTAGA
rJMSF013G19+ AATGAAGGGGTTGATGGCCNACCGGCATTTTCTCGATATAATNGTGAATGAGCTTNTAGA
rJMSF008N09+ AATGAAGGGGTTGATGGCCAACCGGCATTTTCTCGATATAATTGTGAATGAGCTTCTAGA
                      ____________________________________________________________
consensus AATGAAGGGGTTGATGGCCAACCGGCATTTTCTCGATATAATTGTGAATGAGCTTCTAGA
 
. : . : . : . : . : . :
rJMSF044M13+ ACAATCAAGAATAACAGGATTGAAAGTGGAAGAGAAAATGAAAGGGTTATCACCTGTGAT
rJMSF045G22+ ACAATCAAGAATAACAGGATTGAAAGTGGAAGAGAAAATGAAAGGGTTATCACCTGTGAT
rJMSF013G19+ ACAATCANGAATAACAGGATTGAAAGTGGAAGAGAAAATGAAAGGGTTATCACCTGTGAT
rJMSF008N09+ ACAATCAAGAATAACAGGATTGAAAGTGGAAGAGAAAATGAAAGGGTTATCACCTGTGAT
                      ____________________________________________________________
consensus ACAATCAAGAATAACAGGATTGAAAGTGGAAGAGAAAATGAAAGGGTTATCACCTGTGAT
 
. : . : . : . : . : . :
rJMSF044M13+ GTTTGAAGATTTTGTGAAGCCTTATCAAATAAACTTGGAAGAGGAAGGACCATTGCCTCA
rJMSF045G22+ GTTTGAAGATTTTGTGAAGCCTTATCAAATAAACTTGGAAGAGGAAGGACCATTGCCTCA
rJMSF013G19+ GTTTGAAGATTTTGTGAAGCCTTATCAAATAAACTTGGAAGAGGAAGGACCATTGCCTCA
rJMSF008N09+ ATTTGAAGATTTTGTGAAGCCTTATCAAATAAACTTGGAAGAGGAAGGACCATTGCCTCA
                      ____________________________________________________________
consensus GTTTGAAGATTTTGTGAAGCCTTATCAAATAAACTTGGAAGAGGAAGGACCATTGCCTCA
 
. : . : . : . : . : . :
rJMSF044M13+ TAATAACCGCCTGCGTTATGAACCACTCGATGTGTATCCCGCACCCCTGCACCGAAGTTA
rJMSF045G22+ TAATAACCGCCTGCGTTATGAACCACTCGATGTGTATCCCGCACCCCTGCACCGAAGTTA
rJMSF013G19+ TAATAACCGCCTGCGTTATGAACCACTCGATGTGTATCCCGCACCCCTGCACCGAAGTTA
rJMSF008N09+ TAATAACCGCCTGCGTTATGAACCACTCGATGTGTATCCCGCACCCCTGCACCGAAGTTA
                      ____________________________________________________________
consensus TAATAACCGCCTGCGTTATGAACCACTCGATGTGTATCCCGCACCCCTGCACCGAAGTTA
 
. : . : . : . : . : . :
rJMSF044M13+ AGTTGTAGTAACATCATGAGTTTGGTGGCATGTGAATGGTAGATGGAATTACCATTCAGA
rJMSF045G22+ AGTTGTAGTAACATCATGAGTTTGGTGGCATGTGAATGGTAGATGGAATTACCATTCAGA
rJMSF013G19+ AGTTGTAGTAACATCATGAGTTTGGTGGCATGTGAATGGTAGATGGAATTACCATTCAGA
rJMSF008N09+ AGTTGTAGTAACATCATGAGTTTGGTGGCATGTGAATGGTAGATGGAATTACCATTCAGA
                      ____________________________________________________________
consensus AGTTGTAGTAACATCATGAGTTTGGTGGCATGTGAATGGTAGATGGAATTACCATTCAGA
 
. : . : . : . : . : . :
rJMSF044M13+ GAGAGAGAGAGAGAAAACACTGGGAAACGAAGGATGGTTGAGAGTTTTGTAGTGAGTTTG
rJMSF045G22+ GAGAGAGAGAGAGAAAACACTGGGAAACGAAGGATGGTTGAGAGTTTTGTAGTGAGTTTG
rJMSF013G19+ GAGAGAGAGAGAGAAAACACTGGGAAACGAAGGATGGTTGAGAGTTTTGTAGTGAGTTTG
rJMSF008N09+ GAGAGAGAGAGAGAAAACACTGGGAAACGAAGGATGGTTGAGAGTTTTGTAGTGAGTTTG
                      ____________________________________________________________
consensus GAGAGAGAGAGAGAAAACACTGGGAAACGAAGGATGGTTGAGAGTTTTGTAGTGAGTTTG
 
. : . : . : . : . : . :
rJMSF044M13+ GTGGCATGCAAGTGGTAGCTGAAATTAGCATTTGGGAAACATAGTAGCTAGGATGATAAA
rJMSF045G22+ GTGGCATGCAAGTGGTAGCTGAAATTAGCATTTGGGAAACATAGTAGCTAGGATGATAAA
rJMSF013G19+ GNGGCATGCAAGTGGTAGCTGAAATTAGCATTTGGGAAACATAGTAGCTAGGATGATAAA
rJMSF008N09+ GTGGCATGCAAGTGGTAGCTGAAATTAGCATTTGGGAAACATAGTAGCTAGGATGATAAA
                      ____________________________________________________________
consensus GTGGCATGCAAGTGGTAGCTGAAATTAGCATTTGGGAAACATAGTAGCTAGGATGATAAA
 
. : . : . : . : . : . :
rJMSF044M13+ TTTTGATGCAACAATGATTTATCTGTCTGTTGCTCTGTTTC
rJMSF045G22+ TTTTGATGCAACAATGATTTATCTGTCTGTTGCTCTGTTTC
rJMSF013G19+ TTTTGATGCAACAATGATTTATCTGTCTGTTGCTCTGTTTC
rJMSF008N09+ TTTTGATGCAACAATGATTTATCTGTCTGTTGCTCTGTTTCAAGATGGGCTTTCCAATAA
                      ____________________________________________________________
consensus TTTTGATGCAACAATGATTTATCTGTCTGTTGCTCTGTTTCAAGATGGGCTTTCCAATAA
 
. : . : . : . : . : . :
rJMSF008N09+ AGATTGAGATGGCAACCTTGATCATTATTCAAAATTTTAACCTCCAAAAGTGCAATCTTT
                      ____________________________________________________________
consensus AGATTGAGATGGCAACCTTGATCATTATTCAAAATTTTAACCTCCAAAAGTGCAATCTTT