Contig 012525:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF008N09Sequence294002432 (5)729012525 (4)ref|XP_004232810.1|7e-73PREDICTED: ATP-dependent zinc metalloprotease FTSH 12, chloroplastic [Solanum l
JMSF013G19Sequence262002432 (5)658012525 (4)ref|XP_004232810.1|3e-70PREDICTED: ATP-dependent zinc metalloprotease FTSH 12, chloroplastic [Solanum l
JMSF044M13Sequence748002432 (5)ref|XP_009593960.1|7e-45PREDICTED: ATP-dependent zinc metalloprotease FTSH 12, chloroplastic [Nicotiana777012525 (4)ref|XP_004232810.1|2e-86PREDICTED: ATP-dependent zinc metalloprotease FTSH 12, chloroplastic [Solanum l
JMSF045G22Sequence720002432 (5)ref|XP_009593960.1|9e-38PREDICTED: ATP-dependent zinc metalloprotease FTSH 12, chloroplastic [Nicotiana749012525 (4)ref|XP_004232810.1|1e-86PREDICTED: ATP-dependent zinc metalloprotease FTSH 12, chloroplastic [Solanum l

Alignment

This contig is upended


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rJMSF044M13+                                                          TAGCTCCATGGT
                      ____________________________________________________________
consensus                                                             TAGCTCCATGGT
 
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rJMSF044M13+          GGGCGTTGTGCTGAACGAATTGTATTTTGGTGATGATATTACTGATGGAGGCACAGATGA
rJMSF045G22+                                   TTTGGTGATGATATTACTGATGGAGGCACAGATGA
                      ____________________________________________________________
consensus             GGGCGTTGTGCTGAACGAATTGTATTTTGGTGATGATATTACTGATGGAGGCACAGATGA
 
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rJMSF044M13+          TATGGAAAAGATCACAAAGATTGCTCGAGAAATGGTGATAAGTCCTAGGAACTCTAGGTT
rJMSF045G22+          TATGGAAAAGATCACAAAGATTGCTCGAGAAATGGTGATAAGTCCTAGGAACTCTAGGTT
rJMSF013G19+                                                               CTAGGTT
rJMSF008N09+                                                               CTAGGTT
                      ____________________________________________________________
consensus             TATGGAAAAGATCACAAAGATTGCTCGAGAAATGGTGATAAGTCCTAGGAACTCTAGGTT
 
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rJMSF044M13+          GGGGCTTACTGCTTTGACAAAGAAAGTAGGGTTGGGTGATCGACCGGATGATCCTGATGG
rJMSF045G22+          GGGGCTTACTGCTTTGACAAAGAAAGTAGGGTTGGGTGATCGACCGGATGATCCTGATGG
rJMSF013G19+          GGGGCTTACTGCTTTGACAAAGAAAGTAGGGTTGGGTGATCGACCGGATGATCCTGATGG
rJMSF008N09+          GGGGCTTACTGCTTTGACAAAGAAAGTAGGGTTGGGTGATCGACCGGATGATCCTGATGG
                      ____________________________________________________________
consensus             GGGGCTTACTGCTTTGACAAAGAAAGTAGGGTTGGGTGATCGACCGGATGATCCTGATGG
 
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rJMSF044M13+          TGAGATAATAAAATATAAGTGGGATGATCCATATGTAATTCCTGCGAATATGACAGTTGA
rJMSF045G22+          TGAGATAATAAAATATAAGTGGGATGATCCATATGTAATTCCTGCGAATATGACAGTTGA
rJMSF013G19+          TGAGATAATAAAATATAAGTGGGATGATCCATATGTAATTCCTGCGAATATGACAGTTGA
rJMSF008N09+          TGAGATAATAAAATATAAGTGGGATGATCTATATGTAATTCCTGCGAATATGACAGTTGA
                      ____________________________________________________________
consensus             TGAGATAATAAAATATAAGTGGGATGATCCATATGTAATTCCTGCGAATATGACAGTTGA
 
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rJMSF044M13+          AGTATCTGAACTATTTACTCGGGAGTTGACAAGGTACATTGAAGAGACAGAAGAGCTTGC
rJMSF045G22+          AGTATCTGAACTATTTACTCGGGAGTTGACAAGGTACATTGAAGAGACAGAAGAGCTTGC
rJMSF013G19+          AGTATCTGAACTATTTACTCGGGAGTTGACAAGGTACATTGAAGAGNCAGAAGAGCTTGC
rJMSF008N09+          AGTATCTGAACTATTTACTCGGGAGTTGACAAGGTACATTGAAGAGACAGAAGAGCTTGC
                      ____________________________________________________________
consensus             AGTATCTGAACTATTTACTCGGGAGTTGACAAGGTACATTGAAGAGACAGAAGAGCTTGC
 
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rJMSF044M13+          AATGAAGGGGTTGATGGCCAACCGGCATTTTCTCGATATAATTGTGAATGAGCTTCTAGA
rJMSF045G22+          AATGAAGGGGTTGATGGCCAACCGGCATTTTCTCGATATAATTGTGAATGAGCTTCTAGA
rJMSF013G19+          AATGAAGGGGTTGATGGCCNACCGGCATTTTCTCGATATAATNGTGAATGAGCTTNTAGA
rJMSF008N09+          AATGAAGGGGTTGATGGCCAACCGGCATTTTCTCGATATAATTGTGAATGAGCTTCTAGA
                      ____________________________________________________________
consensus             AATGAAGGGGTTGATGGCCAACCGGCATTTTCTCGATATAATTGTGAATGAGCTTCTAGA
 
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rJMSF044M13+          ACAATCAAGAATAACAGGATTGAAAGTGGAAGAGAAAATGAAAGGGTTATCACCTGTGAT
rJMSF045G22+          ACAATCAAGAATAACAGGATTGAAAGTGGAAGAGAAAATGAAAGGGTTATCACCTGTGAT
rJMSF013G19+          ACAATCANGAATAACAGGATTGAAAGTGGAAGAGAAAATGAAAGGGTTATCACCTGTGAT
rJMSF008N09+          ACAATCAAGAATAACAGGATTGAAAGTGGAAGAGAAAATGAAAGGGTTATCACCTGTGAT
                      ____________________________________________________________
consensus             ACAATCAAGAATAACAGGATTGAAAGTGGAAGAGAAAATGAAAGGGTTATCACCTGTGAT
 
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rJMSF044M13+          GTTTGAAGATTTTGTGAAGCCTTATCAAATAAACTTGGAAGAGGAAGGACCATTGCCTCA
rJMSF045G22+          GTTTGAAGATTTTGTGAAGCCTTATCAAATAAACTTGGAAGAGGAAGGACCATTGCCTCA
rJMSF013G19+          GTTTGAAGATTTTGTGAAGCCTTATCAAATAAACTTGGAAGAGGAAGGACCATTGCCTCA
rJMSF008N09+          ATTTGAAGATTTTGTGAAGCCTTATCAAATAAACTTGGAAGAGGAAGGACCATTGCCTCA
                      ____________________________________________________________
consensus             GTTTGAAGATTTTGTGAAGCCTTATCAAATAAACTTGGAAGAGGAAGGACCATTGCCTCA
 
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rJMSF044M13+          TAATAACCGCCTGCGTTATGAACCACTCGATGTGTATCCCGCACCCCTGCACCGAAGTTA
rJMSF045G22+          TAATAACCGCCTGCGTTATGAACCACTCGATGTGTATCCCGCACCCCTGCACCGAAGTTA
rJMSF013G19+          TAATAACCGCCTGCGTTATGAACCACTCGATGTGTATCCCGCACCCCTGCACCGAAGTTA
rJMSF008N09+          TAATAACCGCCTGCGTTATGAACCACTCGATGTGTATCCCGCACCCCTGCACCGAAGTTA
                      ____________________________________________________________
consensus             TAATAACCGCCTGCGTTATGAACCACTCGATGTGTATCCCGCACCCCTGCACCGAAGTTA
 
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rJMSF044M13+          AGTTGTAGTAACATCATGAGTTTGGTGGCATGTGAATGGTAGATGGAATTACCATTCAGA
rJMSF045G22+          AGTTGTAGTAACATCATGAGTTTGGTGGCATGTGAATGGTAGATGGAATTACCATTCAGA
rJMSF013G19+          AGTTGTAGTAACATCATGAGTTTGGTGGCATGTGAATGGTAGATGGAATTACCATTCAGA
rJMSF008N09+          AGTTGTAGTAACATCATGAGTTTGGTGGCATGTGAATGGTAGATGGAATTACCATTCAGA
                      ____________________________________________________________
consensus             AGTTGTAGTAACATCATGAGTTTGGTGGCATGTGAATGGTAGATGGAATTACCATTCAGA
 
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rJMSF044M13+          GAGAGAGAGAGAGAAAACACTGGGAAACGAAGGATGGTTGAGAGTTTTGTAGTGAGTTTG
rJMSF045G22+          GAGAGAGAGAGAGAAAACACTGGGAAACGAAGGATGGTTGAGAGTTTTGTAGTGAGTTTG
rJMSF013G19+          GAGAGAGAGAGAGAAAACACTGGGAAACGAAGGATGGTTGAGAGTTTTGTAGTGAGTTTG
rJMSF008N09+          GAGAGAGAGAGAGAAAACACTGGGAAACGAAGGATGGTTGAGAGTTTTGTAGTGAGTTTG
                      ____________________________________________________________
consensus             GAGAGAGAGAGAGAAAACACTGGGAAACGAAGGATGGTTGAGAGTTTTGTAGTGAGTTTG
 
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rJMSF044M13+          GTGGCATGCAAGTGGTAGCTGAAATTAGCATTTGGGAAACATAGTAGCTAGGATGATAAA
rJMSF045G22+          GTGGCATGCAAGTGGTAGCTGAAATTAGCATTTGGGAAACATAGTAGCTAGGATGATAAA
rJMSF013G19+          GNGGCATGCAAGTGGTAGCTGAAATTAGCATTTGGGAAACATAGTAGCTAGGATGATAAA
rJMSF008N09+          GTGGCATGCAAGTGGTAGCTGAAATTAGCATTTGGGAAACATAGTAGCTAGGATGATAAA
                      ____________________________________________________________
consensus             GTGGCATGCAAGTGGTAGCTGAAATTAGCATTTGGGAAACATAGTAGCTAGGATGATAAA
 
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rJMSF044M13+          TTTTGATGCAACAATGATTTATCTGTCTGTTGCTCTGTTTC                   
rJMSF045G22+          TTTTGATGCAACAATGATTTATCTGTCTGTTGCTCTGTTTC                   
rJMSF013G19+          TTTTGATGCAACAATGATTTATCTGTCTGTTGCTCTGTTTC                   
rJMSF008N09+          TTTTGATGCAACAATGATTTATCTGTCTGTTGCTCTGTTTCAAGATGGGCTTTCCAATAA
                      ____________________________________________________________
consensus             TTTTGATGCAACAATGATTTATCTGTCTGTTGCTCTGTTTCAAGATGGGCTTTCCAATAA
 
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rJMSF008N09+          AGATTGAGATGGCAACCTTGATCATTATTCAAAATTTTAACCTCCAAAAGTGCAATCTTT
                      ____________________________________________________________
consensus             AGATTGAGATGGCAACCTTGATCATTATTCAAAATTTTAACCTCCAAAAGTGCAATCTTT