Contig 012523:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN038O02Sequence641012523 (5)ref|XP_010107920.1|1e-101U-box domain-containing protein 26 [Morus notabilis] gb|EXC17320.1| U-box domain
JMFN040M06Sequence655012523 (5)ref|XP_004230770.1|3e-103PREDICTED: U-box domain-containing protein 26-like [Solanum lycopersicum]
JMSF004A17Sequence256013460 (7)139012523 (5)ref|XP_006346399.1|8e-04PREDICTED: U-box domain-containing protein 26-like [Solanum tuberosum]
JMSF008A24Sequence326013464 (3)ref|XP_006346399.1|8e-63PREDICTED: U-box domain-containing protein 26-like [Solanum tuberosum]772012523 (5)ref|XP_004230770.1|3e-117PREDICTED: U-box domain-containing protein 26-like [Solanum lycopersicum]
JMSF036F18Sequence580013464 (3)ref|XP_006346399.1|3e-64PREDICTED: U-box domain-containing protein 26-like [Solanum tuberosum]763012523 (5)ref|XP_004230770.1|2e-113PREDICTED: U-box domain-containing protein 26-like [Solanum lycopersicum]

Alignment

This contig is upended


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rJMSF036F18+                  GTCGATGTTCCCCTTNCGGAGGCTGNATCCGTCATTGTGTTTTCCGATCCGG
rJMSF008A24+                           CCCCTTCCGGAGGCTGAATCCGTCATTGTGTCTTCCGATCCGG
                      ____________________________________________________________
consensus                     GTCGATGTTCCCCTTCCGGAGGCTGAATCCGTCATTGTGTTTTCCGATCCGG
 
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JMFN040M06-                                    GCTCTCAAATCCTTCAGTTGATGTCCGAATGAACT
JMFN038O02-                                    GCTCTCAAATCCTTCAGTTGATGTCCGAATGAACT
rJMSF036F18+          TTCGAGTTGGTTACCTTGTGTCTCTGCTCTCAAATCCTTCAGTTGATGTCCGAATGAACT
rJMSF008A24+          TTCGAGTTGGTTACCTTGTGTCTCTGCTCTCAAATCCTTCAGTTGATGTCCGAATGAACT
                      ____________________________________________________________
consensus             TTCGAGTTGGTTACCTTGTGTCTCTGCTCTCAAATCCTTCAGTTGATGTCCGAATGAACT
 
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JMFN040M06-           CCGCCGCATTGATAGAGTCAGTTCTCTCCGGAACTAGATCGCCAGAGCTTAGAGCTCAAA
JMFN038O02-           CCGCCGCATTGATAGAGTCAGTTCTCTCCGGAACTAGATCGCCAGAGCTTAGAGCTCAAA
rJMSF036F18+          CCGCCGCATTGATAGAGTCAGTTCTCTCCGGAACTAGATCGCCAGAGCTTAGAGCTCAAA
rJMSF008A24+          CCGCCGCATTGATAGAGTCAGTTCTCTCCGGAACTAGATCGCCAGAGCTTAGAGCTCAAA
                      ____________________________________________________________
consensus             CCGCCGCATTGATAGAGTCAGTTCTCTCCGGAACTAGATCGCCAGAGCTTAGAGCTCAAA
 
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JMFN040M06-           TCAGCAATGCCGATGAGATCTTCGAAGGAATCGTCGGAATTCTCAATTGTCCGTTGTCGT
JMFN038O02-           TCAGCAATGCCGATGAGATCTTCGAAGGAATCGTCGGAATTCTCAATTGTCCGTTGTCGT
rJMSF036F18+          TCAGCAATGCCGATGAGATCTTCGAAGGAATCGTCGGAATTCTCAATTGTCCGTTGTCGT
rJMSF008A24+          TCAGCAATGCCGATGAGATCTTCGAAGGAATCGTCGGAATTCTCAATTGTCCGTTGTCGT
                      ____________________________________________________________
consensus             TCAGCAATGCCGATGAGATCTTCGAAGGAATCGTCGGAATTCTCAATTGTCCGTTGTCGT
 
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JMFN040M06-           ATTCTAGAGCCTTGAAGATCGGAGTCAAGGCACTATTCGCACTGTGTTTGGCAAAGCAAT
JMFN038O02-           ATTCTAGAGCCTTGAAGATCGGAGTCAAGGCACTATTCGCACTGTGTTTGGCAAAGCAAT
rJMSF036F18+          ATTCTAGAGCCTTGAAGATCGGAGTCAAGGCACTATTCGCACTGTGTTTGGCAAAGCAAT
rJMSF008A24+          ATTCTAGAGCCTTGAAGATCGGAGTCAAGGCACTATTCGCACTGTGTTTGGCAAAGCAAT
                      ____________________________________________________________
consensus             ATTCTAGAGCCTTGAAGATCGGAGTCAAGGCACTATTCGCACTGTGTTTGGCAAAGCAAT
 
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JMFN040M06-           ACCGGCACAAGGCGGTGACTGCCGGAGCAGTGGAGGCGTTGATAGACAGGTTGCAGGATT
JMFN038O02-           ACCGGCACAAGGCGGTGACTGCCGGAGCAGTGGAGGCGTTGATAGACAGGTTGCAGGATT
rJMSF036F18+          ACCGGCACAAGGCGGTGACTGCCGGAGCAGTGGAGGCGTTGATAGACAGGTTGCAGGATT
rJMSF008A24+          ACCGGCACAAGGCGGTGACTGCCGGAGCAGTGGAGGCGTTGATAGACAGGTTGCAGGATT
                      ____________________________________________________________
consensus             ACCGGCACAAGGCGGTGACTGCCGGAGCAGTGGAGGCGTTGATAGACAGGTTGCAGGATT
 
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JMFN040M06-           TCGACAAGTGTGACGCGGAGAGAGCGCTAGCTACGGTGGAGCTTCTATGCCGAATTCCAT
JMFN038O02-           TCGACAAGTGTGACGCGGAGAGAGCGCTAGCTACGGTGGAGCTTCTATGCCGAATTCCAT
rJMSF036F18+          TCGACAAGTGTGACGCGGAGAGAGCGCTAGCTACGGTGGAGCTTCTATGCCGAATTCCAT
rJMSF008A24+          TCGACAAGTGTGACGCGGAGAGAGCGCTAGCTACGGTGGAGCTTCTATGCCGAATTCCAT
                      ____________________________________________________________
consensus             TCGACAAGTGTGACGCGGAGAGAGCGCTAGCTACGGTGGAGCTTCTATGCCGAATTCCAT
 
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JMFN040M06-           CCGGATGTGCGGCGTTCGCGGCCCACGCATTGACCGTCCCTCTGCTCGTGAAGATCATCC
rJMSF004A17+                                                         GTGAAGATCATCN
JMFN038O02-           CCGGATGTGCGGCGTTCGCGGCCCACGCATTGACCGTCCCTCTGCTCGTGAAGATCATCC
rJMSF036F18+          CCGGATGTGCGGCGTTCGCGGCCCACGCATTGACCGTCCCTCTGCTCGTGAAGATCATCC
rJMSF008A24+          CCGGATGTGCGGCGTTCGCGGCCCACGCATTGACCGTCCCTCTGCTCGTGAAGATCATCC
                      ____________________________________________________________
consensus             CCGGATGTGCGGCGTTCGCGGCCCACGCATTGACCGTCCCTCTGCTCGTGAAGATCATCC
 
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JMFN040M06-           TGAAGATCTCGCACCGGGCCACTGAGTACGCAGCCGGAGCTCTTCTCTCGATATGCTCCG
rJMSF004A17+          TGAAGATCTCGCACNGGGCCANTGAGTACGCAGCNGGAGCTCTTCTCTCGATATGCTCCG
JMFN038O02-           TGAAGATCTCGCACCGGGCCACTGAGTACGCAGCCGGAGCTCTTCTCTCGATATGCTCCG
rJMSF036F18+          TGAAGATCTCGCACCGGGCCACTGAGTACGCAGCCGGAGCTCTTCTCTCGATATGCTCCG
rJMSF008A24+          TGAAGATCTCGCACCGGGCCACTGAGTACGCAGCCGGAGCTCTTCTCTCGATATGCTCCG
                      ____________________________________________________________
consensus             TGAAGATCTCGCACCGGGCCACTGAGTACGCAGCCGGAGCTCTTCTCTCGATATGCTCCG
 
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JMFN040M06-           CCTCCGAACAAGCTCAACGAGAGGCGGCGGCGGCGGGCGTGATGACTCAGTTGCTACTGC
rJMSF004A17+          CNTCCGANCAAGNTCAA                                           
JMFN038O02-           CCTCCGAACAAGCTCAACGAGAGGCGGCGGCGGCGGGCGTGATGACTCAGTTGCTACTGC
rJMSF036F18+          CCTCCGAACAAGCTCAACGAGAGGCGGCGGCGGCGGGCGTGATGACTCAGTTGCTACTGC
rJMSF008A24+          CCTCCGAACAAGCTCAACGAGAGGCGGCGGCGGCGGGCGTGATGACTCAGTTGCTACTGC
                      ____________________________________________________________
consensus             CCTCCGAACAAGCTCAACGAGAGGCGGCGGCGGCGGGCGTGATGACTCAGTTGCTACTGC
 
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JMFN040M06-           TCGTCCAAAGCGATTGTACAGAACGGGCGAAACGGAAAGCGCAAATGCTTCTGAAGCTGC
JMFN038O02-           TCGTCCAAAGCGATTGTACAGAACGGGCGAAACGGAAAGCGCAAATGCTTCTGAAGCTGC
rJMSF036F18+          TCGTCCAAAGCGATTGTACAGAACGGGCGAAACGGAAAGCGCAAATGCTTCTGAAGCTGC
rJMSF008A24+          TCGTCCAAAGCGATTGTACAGAACGGGCGAAACGGAAAGCGCAAATGCTTCTGAAGCTGC
                      ____________________________________________________________
consensus             TCGTCCAAAGCGATTGTACAGAACGGGCGAAACGGAAAGCGCAAATGCTTCTGAAGCTGC
 
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JMFN040M06-           TTCGCGATTGTTGGCCGGAAGACTTCACTGGCATTTCAGACGATTACAATTGCAGCTACG
JMFN038O02-           TTCGCGATTGTTGGCCGGAAGACTTCACTGGCATTTCAGACGATTACAATTGCAGCTACG
rJMSF036F18+          TTCGCGATTGTTGGCCGGAAGACTTCACTGCAATTTCAGACGATTACAATTGCAGCTACG
rJMSF008A24+          TTCGCGATTGTTGGCCGGAAGACTTCACTGCAATTTCAGACGATTACAATTGCAGCTACG
                      ____________________________________________________________
consensus             TTCGCGATTGTTGGCCGGAAGACTTCACTGGCATTTCAGACGATTACAATTGCAGCTACG
 
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JMFN040M06-           TCGTTCCCTTTTGATCATAC                                        
JMFN038O02-           TCGTTC                                                      
rJMSF036F18+          TCGTTCCCTTTTGATCATACTGTTATATACTCCGTAACATATAAATTCGGG         
rJMSF008A24+          TCGTTCCCTTTTGATCATACTGTTATATACTCCGTAACATATAAATTCGGGTAGTCATTA
                      ____________________________________________________________
consensus             TCGTTCCCTTTTGATCATACTGTTATATACTCCGTAACATATAAATTCGGGTAGTCATTA