| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF022G21 | Sequence | 523 | 004956 (6) | ref|XP_009782152.1| | 1e-57 | PREDICTED: protein decapping 5 isoform X2 [Nicotiana sylvestris] | 736 | 012521 (3) | ref|XP_010066758.1| | 2e-36 | PREDICTED: protein decapping 5 isoform X2 [Eucalyptus grandis] gb|KCW64786.1| hy |
| JMSF007G14 | Sequence | 414 | 004956 (6) | ref|XP_007222759.1| | 3e-41 | hypothetical protein PRUPE_ppa006535mg [Prunus persica] gb|EMJ23958.1| hypotheti | 742 | 012521 (3) | ref|XP_010066757.1| | 1e-16 | PREDICTED: protein decapping 5 isoform X1 [Eucalyptus grandis] gb|KCW64788.1| hy |
| JMSF026E18 | Sequence | 670 | 004956 (6) | ref|XP_002281060.1| | 5e-80 | PREDICTED: protein decapping 5 [Vitis vinifera] ref|XP_010648039.1| PREDICTED: p | 769 | 012521 (3) | emb|CDP00559.1| | 1e-40 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
rJMSF026E18+ ACTCATGCACAAAGGCCAAATGGAGC
____________________________________________________________
consensus ACTCATGCACAAAGGCCAAATGGAGC
. : . : . : . : . : . :
rJMSF026E18+ TCCATTTCAGATGCGCCACAACAACTACAGAGGGCGTGGAGGAAGAGGAACTGGGATTTC
____________________________________________________________
consensus TCCATTTCAGATGCGCCACAACAACTACAGAGGGCGTGGAGGAAGAGGAACTGGGATTTC
. : . : . : . : . : . :
rJMSF026E18+ AAGACCAGTGACAAATTTTACGGAGGAGTTTGATTTTATGGCAATGAATGAGAAATTTAA
rJMFF022G21+ CCAGTGACAAATTTTACGGAGGAGTTTGATTTTATGGCAATGAATGAGAAATTTAA
____________________________________________________________
consensus AAGACCAGTGACAAATTTTACGGAGGAGTTTGATTTTATGGCAATGAATGAGAAATTTAA
. : . : . : . : . : . :
rJMSF026E18+ CAAAGATGAAGTTTGGGGTCATCTTGGCAAGAGTTCTAAATCTGATTCAAGGGACAATGA
rJMFF022G21+ CAAAGATGAAGTTTGGGGTCATCTTGGCAAGAGTTCTAAGTCTGATTCAAGGGACAAAGA
rJMSF007G14+ TCTGATTCAAGGGACAAAGA
____________________________________________________________
consensus CAAAGATGAAGTTTGGGGTCATCTTGGCAAGAGTTCTAAGTCTGATTCAAGGGACAAAGA
. : . : . : . : . : . :
rJMSF026E18+ AGGGAATGTAAATGGCAATGATGAAAATAATTATCACGAAGAAGAAGATGCTGGCCATCC
rJMFF022G21+ AGGGAATGTAAATGGCAATGATGAAAATAATTATTACGAACAAGAAGATGCTGGCCATCC
rJMSF007G14+ AGGGAATGTAAATGGCAATGATGAAAATAATTATTACGAACAAGAAGATGCTGGCCATCC
____________________________________________________________
consensus AGGGAATGTAAATGGCAATGATGAAAATAATTATTACGAACAAGAAGATGCTGGCCATCC
. : . : . : . : . : . :
rJMSF026E18+ TAGGGTTGACGTCAAGCCTGTTTATAACAAGGATGACTTTTTTGATTCCTTGTCTTCTAA
rJMFF022G21+ TAGGGTTGAGGTCAAGCCAATTTATAACAAGGATGACTTTTTTGATTCCTTGTCTTCTAA
rJMSF007G14+ TAGGGTTGAGGTCAAGCCAATTTATAACAAGGATGACTTTTTTGATTCCTTGTCTTCTAA
____________________________________________________________
consensus TAGGGTTGAGGTCAAGCCAATTTATAACAAGGATGACTTTTTTGATTCCTTGTCTTCTAA
. : . : . : . : . : . :
rJMSF026E18+ TGCATTGGATAATCAATCAAATCAAGTAAGGCCAAGGTTTTCTGAGCAGAGGAAGATTGA
rJMFF022G21+ TGCATTGGATAATCAATCAAATCAAGTAAGGCCAAGGTTTTCCGAGCAGAGGAAGATTGA
rJMSF007G14+ TGCATTGGATAATCAATCAAATCAAGTAAGGCCAAGGTTTTCCGAGCAGAGGAAGATTGA
____________________________________________________________
consensus TGCATTGGATAATCAATCAAATCAAGTAAGGCCAAGGTTTTCCGAGCAGAGGAAGATTGA
. : . : . : . : . : . :
rJMSF026E18+ TGCCGAGACATTTGGAGGAGAGTACACAAGATATAGGGGTGGTCGTGGCCGTGGC-----
rJMFF022G21+ TGCCGAGACATTTGGAGGAGAGTACACAAGATATAGGGGTGGTCGTGGCCGTGGCCCTGG
rJMSF007G14+ TGCCGAGACATTTGGAGGAGAGTACACAAGATATAGGGGTGGTCGTGGCCGTGGCCCTGG
____________________________________________________________
consensus TGCCGAGACATTTGGAGGAGAGTACACAAGATATAGGGGTGGTCGTGGCCGTGGCCCTGG
. : . : . : . : . : . :
rJMSF026E18+ -CCTTATCGTGGTGGCCGATCTCGAGGTTATTATGGAGGATATGGCGGAAGAGGATATGG
rJMFF022G21+ TCCTTATCGTGGTGGCCGATCTCGAGGTTATTATGGAGGATATGGCGGAAGAGGATATGG
rJMSF007G14+ TCCTTATCGTGGTGGCCGATCTCGAGGTTATTATGGAGGATATGGCGGAAGAGGATATGG
____________________________________________________________
consensus TCCTTATCGTGGTGGCCGATCTCGAGGTTATTATGGAGGATATGGCGGAAGAGGATATGG
. : . : . : . : . : . :
rJMSF026E18+ CTATGGTGGTAGAGGCCGTGGTCGTGGGTCTTCCGACTAGAGTGCGTATATGTGGTATAT
rJMFF022G21+ CTATGGTGGTAGAGGCCGTGGTCGTGGCTCTTCCGACTAGAGTGCGTATATGTGGTATAT
rJMSF007G14+ CTATGGTGGTAGAGGCCGTGGTCGTGGCTCTTCCGACTAGAGTGCGTATATGTGGTATAT
____________________________________________________________
consensus CTATGGTGGTAGAGGCCGTGGTCGTGGCTCTTCCGACTAGAGTGCGTATATGTGGTATAT
. : . : . : . : . : . :
rJMSF026E18+ TTGCATAAGTTTGTACGAGAGCAATGCTCGTGGTAAAAAGGTTTGGCTTAAAGCAATAGT
rJMFF022G21+ TTGCATAAGTTTGTACGAGAGCATTGTGCGTGGTAAAAAAGTTTGGCTTAAAGCAAAAGT
rJMSF007G14+ TTGCATAAGTTTGTACGAGAGCATTGTGCGTGGTAAAAAAGTTTGGCTTAAAGCAAAAGT
____________________________________________________________
consensus TTGCATAAGTTTGTACGAGAGCATTGTGCGTGGTAAAAAAGTTTGGCTTAAAGCAAAAGT
. : . : . : . : . : . :
rJMSF026E18+ TGTGTTCTTCTCCCATGAGGATTTGCAATGTTTAGAGTATTTCCATTGTTGTTTTTGCAT
rJMFF022G21+ TGTGTTCTTCTCCCTTGAGGATTGGCAATGTTTAGAGTATTTCCATTGTTGTTTTTGCAT
rJMSF007G14+ TGTGTTCTTCTCCCTTGAGGATTGGCAATGTTTAGAGTATTTCCATTGTTGTTTTTGCAT
____________________________________________________________
consensus TGTGTTCTTCTCCCTTGAGGATTGGCAATGTTTAGAGTATTTCCATTGTTGTTTTTGCAT
. : . : . : . : . : . :
rJMSF026E18+ TTTAG-TTTTCTGTAATCTGAGGAATAAAACTAGGTTGTAGGGAGGATGGTCGGGATACG
rJMFF022G21+ TTTAGTTTTTCTGTAATCTGAGGAATAAAACTAGGTTGTAGGGAGGATGGTTGGGATCCG
rJMSF007G14+ TTTAGTTTTTCTGTAATCTGAGGAATAAAACTAGGTTGTAGGGAGGATGGTTGGGATCCG
____________________________________________________________
consensus TTTAGTTTTTCTGTAATCTGAGGAATAAAACTAGGTTGTAGGGAGGATGGTTGGGATCCG
. : . : . : . : . : . :
rJMSF026E18+ TGGTTCC
rJMFF022G21+ TGGTTCCATATTTTCGTTTCTCTTCTTTCCCTCAATGAAGCTTTCATCAAGCGATTGGTC
rJMSF007G14+ TGGTTCCATATTTTCGTTTCTCTTCTTTCCCTCAATGAAGCTTTCATCAAGCGATTGGTC
____________________________________________________________
consensus TGGTTCCATATTTTCGTTTCTCTTCTTTCCCTCAATGAAGCTTTCATCAAGCGATTGGTC
. : . : . : . : . : . :
rJMFF022G21+ ATATCATATGACTCATTTAT
rJMSF007G14+ ATATCATATGACTCATTTATTGTCCTAGAGGCATACGCCCATACCAACCTCTGATCAAGT
____________________________________________________________
consensus ATATCATATGACTCATTTATTGTCCTAGAGGCATACGCCCATACCAACCTCTGATCAAGT
. : . : . : . : . : . :
rJMSF007G14+ CAATTAGATATTCAGATCAATATCAAATATTTAATCATACATTAGTATTATATTCAACAT
____________________________________________________________
consensus CAATTAGATATTCAGATCAATATCAAATATTTAATCATACATTAGTATTATATTCAACAT