Contig 012520:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF009P05+                                                                     C
rJMSF007E17+                                                           TTAGCTATTCC
                      ____________________________________________________________
consensus                                                              TTAGCTATTCC
 
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rJMSF009P05+          TTATTCCAGTGACTAGTCTTATGCTTTCATCCATGCAATTCAAGCCTATATAATCCTTGC
rJMSF007E17+          TTATTCCAGTGACTAGTCTTATGCTTTCATCCATGCAATTCAAGCCTATATAATCCTTGC
                      ____________________________________________________________
consensus             TTATTCCAGTGACTAGTCTTATGCTTTCATCCATGCAATTCAAGCCTATATAATCCTTGC
 
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rJMSF009P05+          ACCAGTCTCATCTCTCATTCATATATATAGGCGCTTTTGACTGGAAATAAAATGCATAGG
rJMSF007E17+          ACCAGTCTCATCTCTCATTCATATATATAGGCGCTTTTGACTGGAAATAAAATGCATAGG
                      ____________________________________________________________
consensus             ACCAGTCTCATCTCTCATTCATATATATAGGCGCTTTTGACTGGAAATAAAATGCATAGG
 
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rJMSF009P05+          TTTCATATTTACAGATTGTGAGTTTATTAGCGAAATAGATGCCATCACTTCATATCCTTC
rJMSF007E17+          TTTCATATTTACAGATTGTGAGTTTATTAGCGAAATAGATGCCATCACTTCATATCCTTC
                      ____________________________________________________________
consensus             TTTCATATTTACAGATTGTGAGTTTATTAGCGAAATAGATGCCATCACTTCATATCCTTC
 
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rJMSF009P05+          TGTATTAAGAGTGAAGGATGGAATTCTTTTTTGTNTTGGTCTATAATCTTGTCTGCCCTA
rJMSF007E17+          TGTATTAAGAGTGAAGGATGGAATTCTTTTTTGTTTTGGTCTATAATCTTGTCTGCCCTA
                      ____________________________________________________________
consensus             TGTATTAAGAGTGAAGGATGGAATTCTTTTTTGTTTTGGTCTATAATCTTGTCTGCCCTA
 
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rJMSF009P05+          GTTATGATATCGCAAGGAAAGAGTAAATCGGTGGACAATTNTGCTGTATCAAATTTTTAC
rJMSF007E17+          GTTATGATATCGCAAGGAAAGAGTAAATCGGTGGACAATTTTGCTGTATCAAATTTTTAC
                      ____________________________________________________________
consensus             GTTATGATATCGCAAGGAAAGAGTAAATCGGTGGACAATTTTGCTGTATCAAATTTTTAC
 
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rJMSF009P05+          AATTGTAGTATAATTGTTTTCTTTTTACCCCCTAACTAAGTAATTAAT-ATGATTTTATA
rJMSF007E17+          AATTGTAGTATAATTGTTTTCTTTTTACCCCCTAACTAAGTAATTAATAATGATTTTATA
                      ____________________________________________________________
consensus             AATTGTAGTATAATTGTTTTCTTTTTACCCCCTAACTAAGTAATTAATAATGATTTTATA
 
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rJMSF009P05+          ATTTATAGTCTGACTGACTGGCTTACCTATGATTGAATGATTTAGTATTGATCTGTTATA
rJMSF007E17+          ATTTATAGTCTGACTGACTGGCTTACCTATGATTGAATGATTTAGTATTGATCTGTTATA
                      ____________________________________________________________
consensus             ATTTATAGTCTGACTGACTGGCTTACCTATGATTGAATGATTTAGTATTGATCTGTTATA
 
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rJMSF009P05+          GTGTGATTTATTTTAAATTTTTAATTCAAGATGTCCTTATATTGGTGCTTGTNTCCTATG
rJMSF007E17+          GTGTGATTTATTTTAAATTTTTAATTCAAGATGTCCTTATATTGGTGCTTGTTTCCTATG
                      ____________________________________________________________
consensus             GTGTGATTTATTTTAAATTTTTAATTCAAGATGTCCTTATATTGGTGCTTGTTTCCTATG
 
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rJMSF009P05+          TGCTGATGTGCATTTTTTAAGAATTATACGTAGTGGTTAGGTGTTATGTTTCATAATTTG
rJMSF007E17+          TGCTGATGTGCATTTTTTAAGAATTATACGTAGTGGTTAGGTGTTATGTTTCATAATTTG
                      ____________________________________________________________
consensus             TGCTGATGTGCATTTTTTAAGAATTATACGTAGTGGTTAGGTGTTATGTTTCATAATTTG
 
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rJMSF009P05+          TTACTTTTATTAAGAACTTGCACATTTTCTTCCTATACTTGTGGGTGTCTCTCTCTCTAT
rJMSF007E17+          TTACTTTTATTAAGAACTTGCACATTTTCTTCCTATACTTGTGGGTGTCTCTCTCTCTAT
                      ____________________________________________________________
consensus             TTACTTTTATTAAGAACTTGCACATTTTCTTCCTATACTTGTGGGTGTCTCTCTCTCTAT
 
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rJMSF009P05+          ATATATCTATATATGAAGTATTAGCAGGCTTGGGGTTCTATAAAATCTTAAGGAGATATA
rJMSF007E17+          ATATATCTATATATGAAGTATTAGCAGGCTTGGGGTTCTATAAAATCTTAAGGAGATATA
                      ____________________________________________________________
consensus             ATATATCTATATATGAAGTATTAGCAGGCTTGGGGTTCTATAAAATCTTAAGGAGATATA
 
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rJMSF009P05+          TTTACTGCATTCTGGGCTTCTTTGAACCTTGTCAAGTTATTGAGT               
rJMSF007E17+          TTTACTGCATTCTGGGCTTCTTTGAACCTTGTCAAGTTATTGAGTTGTAAGTAAATTGGC
                      ____________________________________________________________
consensus             TTTACTGCATTCTGGGCTTCTTTGAACCTTGTCAAGTTATTGAGTTGTAAGTAAATTGGC