Contig 012519: Sequence
BLAST Hits against nr-aa DB Show
| clone | 5'-sequence | 3'-sequence |
|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description |
|---|
| JMSF007E06 | Sequence | 436 | 012519 (2) | gb|KCW68986.1| | 1e-42 | hypothetical protein EUGRSUZ_F02548, partial [Eucalyptus grandis] | 638 | 012519 (2) | gb|KHG02597.1| | 2e-26 | putative RNA-binding C17H9.04c [Gossypium arboreum] gb|KJB53895.1| hypothetical |
Alignment
This contig is upended
. : . : . : . : . : . :
JMSF007E06- AAGCTTCTCACCACTTTCTCTCTTCTCTTAGCTTACCTCGGCATTTCCGAATTCTTA
____________________________________________________________
consensus AAGCTTCTCACCACTTTCTCTCTTCTCTTAGCTTACCTCGGCATTTCCGAATTCTTA
. : . : . : . : . : . :
JMSF007E06- TTTCACTAGTATAGATTGGACAGGGAAAATGAACAGGCCAGGAGACTGGAATTGCAGGTC
____________________________________________________________
consensus TTTCACTAGTATAGATTGGACAGGGAAAATGAACAGGCCAGGAGACTGGAATTGCAGGTC
. : . : . : . : . : . :
JMSF007E06- GTGCCAGCACTTGAACTTCCAGAGGAGAGAGTCATGCCAGAGGTGCGGAGAAGCAAAGCC
____________________________________________________________
consensus GTGCCAGCACTTGAACTTCCAGAGGAGAGAGTCATGCCAGAGGTGCGGAGAAGCAAAGCC
. : . : . : . : . : . :
JMSF007E06- CGGAGATAATTATGGCAGTTTCGGGCTGGGGAGGGCCGCCGGCGTTGGGCCGGACGTCAG
rJMSF007E06+ GGGCTGGGGAGGGCCGCCGGCGTTGGGCCGGACGTCAG
____________________________________________________________
consensus CGGAGATAATTATGGCAGTTTCGGGCTGGGGAGGGCCGCCGGCGTTGGGCCGGACGTCAG
. : . : . : . : . : . :
JMSF007E06- GCCCGGCGACTGGTACTGCGCCGTCGGAAACTGCGGGACCCACAATTTCGCCAGCCGCTC
rJMSF007E06+ GCCCGGCGACTGGTACTGCGCCGTCGGAAACTGCGGGACCCACAATTTCGCCAGCCGCTC
____________________________________________________________
consensus GCCCGGCGACTGGTACTGCGCCGTCGGAAACTGCGGGACCCACAATTTCGCCAGCCGCTC
. : . : . : . : . : . :
JMSF007E06- CAGCTGCTTCAAGTGCGGCGCCTTCAGGGAGGATTACTCCTTCAGCGGCGGTGAGGTGGC
rJMSF007E06+ CAGCTGCTTCAAGTGNGGNGCCTTCAGGGNGGNTTACTCCTTCAGCGGCGGNGAGGNGGC
____________________________________________________________
consensus CAGCTGCTTCAAGTGCGGCGCCTTCAGGGAGGATTACTCCTTCAGCGGCGGTGAGGTGGC
. : . : . : . : . : . :
JMSF007E06- CGCTGACTATATGTCGCGTCAGAGAGGANGCTATGGGTTCGCCGGCGGCAGCCGCTCTGG
rJMSF007E06+ CGCNGACTATATGTCGCGTCAGNGAGGNGGCTATGGGTTNGCCGGCGGCAGCCGCTNTGG
____________________________________________________________
consensus CGCTGACTATATGTCGCGTCAGAGAGGAGGCTATGGGTTCGCCGGCGGCAGCCGCTCTGG
. : . : . : . : . : . :
JMSF007E06- CTGGAAATCCGGCGATTGG
rJMSF007E06+ CTGGAAATCCGGNGATTGGATTTGCNCTAGGCCNGGGNGCAATGNGCNCAACTTTGCAAA
____________________________________________________________
consensus CTGGAAATCCGGCGATTGGATTTGCNCTAGGCCNGGGNGCAATGNGCNCAACTTTGCAAA
. : . : . : . : . : . :
rJMSF007E06+ TAGGATGGNGNGTTTCCGATGCAATGCNCCTCGNGACTCCGGTAACAAGTCCTACAATTT
____________________________________________________________
consensus TAGGATGGNGNGTTTCCGATGCAATGCNCCTCGNGACTCCGGTAACAAGTCCTACAATTT
. : . : . : . : . : . :
rJMSF007E06+ TTGATGAATTATTAATATAATAATTCATCNTTGATTNTCAATTTTTAGGTTTCGCATTTA
____________________________________________________________
consensus TTGATGAATTATTAATATAATAATTCATCNTTGATTNTCAATTTTTAGGTTTCGCATTTA
. : . : . : . : . : . :
rJMSF007E06+ AGNGNGAATCNAGAAAGGNGNTTCNGTCNAGAAATGATTNTTAGNGCTCNTGCCCTTTAC
____________________________________________________________
consensus AGNGNGAATCNAGAAAGGNGNTTCNGTCNAGAAATGATTNTTAGNGCTCNTGCCCTTTAC
. : . : . : . : . : . :
rJMSF007E06+ TGCCAACNTTATTGTTTTCCCTAGTTTTTTGTTCTTTTTTTTTTTAATTTCTATTTTTTT
____________________________________________________________
consensus TGCCAACNTTATTGTTTTCCCTAGTTTTTTGTTCTTTTTTTTTTTAATTTCTATTTTTTT
. : . : . : . : . : . :
rJMSF007E06+ TTTAAATTATATTATTCTATATATCTTCTAGCTAGGCAACTTTAGACTATTTTATCACCA
____________________________________________________________
consensus TTTAAATTATATTATTCTATATATCTTCTAGCTAGGCAACTTTAGACTATTTTATCACCA
. : . : . : . : . : . :
rJMSF007E06+ AAAAGAGTGAGGATCTGAAACTGAGTAGTACCTTTTAATTATGCATTTGTTTNCNTCATT
____________________________________________________________
consensus AAAAGAGTGAGGATCTGAAACTGAGTAGTACCTTTTAATTATGCATTTGTTTNCNTCATT