Contig 012518:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF007D08Sequence307024095781012518 (2)
JMSF035I05Sequence430005175 (7)gb|KJB18802.1|1e-57hypothetical protein B456_003G069700 [Gossypium raimondii]655012518 (2)

Alignment

This contig is upended


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rJMSF035I05+           CAAGCGATCTGTTGATTAATATTTNGACCAGATTGTCCGTAAGATCTCNTANGCGGTTG
                      ____________________________________________________________
consensus              CAAGCGATCTGTTGATTAATATTTNGACCAGATTGTCCGTAAGATCTCNTANGCGGTTG
 
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rJMSF035I05+          AAACGTGTNAGTAAATTTTTCTATAATTTAATTAAAAACGATCNTCAATTCATTCAAAAA
                      ____________________________________________________________
consensus             AAACGTGTNAGTAAATTTTTCTATAATTTAATTAAAAACGATCNTCAATTCATTCAAAAA
 
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rJMSF035I05+          CACTTTGAATTTAGTCGAACTAAAACTGGTGGTGCTGTTATAGAGTTTAATTCTGCCGAT
                      ____________________________________________________________
consensus             CACTTTGAATTTAGTCGAACTAAAACTGGTGGTGCTGTTATAGAGTTTAATTCTGCCGAT
 
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rJMSF035I05+          GGTGAAAGTGTGNTATTTTACTTGGTCTACAAAGATTTAGAGTCTAATGAGACTAGATGC
                      ____________________________________________________________
consensus             GGTGAAAGTGTGNTATTTTACTTGGTCTACAAAGATTTAGAGTCTAATGAGACTAGATGC
 
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rJMSF035I05+          ATATACCTAGACATGCCAAATTCAAGATTATTAAGATACATCAAGTGTTGTGATGGTATG
                      ____________________________________________________________
consensus             ATATACCTAGACATGCCAAATTCAAGATTATTAAGATACATCAAGTGTTGTGATGGTATG
 
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rJMSF035I05+          CTATGCCTATTTGTNTGTAAGGATGCTANAAATGAAATTAATGGTGATTCGACTGNTGNT
                      ____________________________________________________________
consensus             CTATGCCTATTTGTNTGTAAGGATGCTANAAATGAAATTAATGGTGATTCGACTGNTGNT
 
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rJMSF035I05+          GTTTTCATATNGAATCCATCCNTTATGGAAATTATGGCCTTACCTTCAATTAAGGTGCCT
                      ____________________________________________________________
consensus             GTTTTCATATNGAATCCATCCNTTATGGAAATTATGGCCTTACCTTCAATTAAGGTGCCT
 
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rJMSF035I05+          AACAAACCACCTATCGAAGNTGTTCTAGGTATGCGGTTNGCATNTGGGTTGACTAACAAC
rJMSF007D08+              AACCACCTATCGAAGTTGTTCTAGGTATGCGGTTTGCATTTGGGTTGACTAACAAC
                      ____________________________________________________________
consensus             AACAAACCACCTATCGAAGTTGTTCTAGGTATGCGGTTTGCATTTGGGTTGACTAACAAC
 
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rJMSF035I05+          ATGGTCGGGAAAGTTATCATGCTTCTGAGTTTTGAAGATGTNAAGTCGGACTGTGATGAT
rJMSF007D08+          ATGGTCGGGAAAGTTATCATGCTTTTGAGTTTTGAAGATGTAAAGTCGGATTGTGATGAT
                      ____________________________________________________________
consensus             ATGGTCGGGAAAGTTATCATGCTTTTGAGTTTTGAAGATGTAAAGTCGGATTGTGATGAT
 
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rJMSF035I05+          AGNTANGAAATTGTAATGGTTNGTAGCCAAGTAGACGATTCNTGGAATTGGAGGCAAATT
rJMSF007D08+          AGTTATGAAATTGTAATGGTTTGTAGCCAAGTAGACGATTCATGGAATTGGAGGCAAATT
                      ____________________________________________________________
consensus             AGTTATGAAATTGTAATGGTTTGTAGCCAAGTAGACGATTCATGGAATTGGAGGCAAATT
 
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rJMSF035I05+          GATGCTGATCCACAAGCTCCTAAATATTTATTTAGGTCTGTATATTNTGGTGATTT    
rJMSF007D08+          GATGCTGATCCACAAGCTCCTAAATATTTATTTAGGTCTGTATATTTTGGTGATTTTTAT
                      ____________________________________________________________
consensus             GATGCTGATCCACAAGCTCCTAAATATTTATTTAGGTCTGTATATTTTGGTGATTTTTAT
 
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rJMSF007D08+          TTCAAAGGAAAATACTATTGGTACGGTTTGTCTGGATTGATTTGGTTTGACATGGATGAT
                      ____________________________________________________________
consensus             TTCAAAGGAAAATACTATTGGTACGGTTTGTCTGGATTGATTTGGTTTGACATGGATGAT
 
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rJMSF007D08+          GAGGTTTTTGGTATGATTAATACTCCATTTGAATTGAATATTAATTTCGTTACGTTTACG
                      ____________________________________________________________
consensus             GAGGTTTTTGGTATGATTAATACTCCATTTGAATTGAATATTAATTTCGTTACGTTTACG
 
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rJMSF007D08+          AATGAGACCATTGTGTGTGTTAGTCAACCCATTTTTCCCCCCGATGAACAGGGTAAGGTT
                      ____________________________________________________________
consensus             AATGAGACCATTGTGTGTGTTAGTCAACCCATTTTTCCCCCCGATGAACAGGGTAAGGTT
 
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rJMSF007D08+          TATTTTGACATTTGGTTAATGGAGGAAAATAATAATATTTTTAATTGGCATAAACAAACA
                      ____________________________________________________________
consensus             TATTTTGACATTTGGTTAATGGAGGAAAATAATAATATTTTTAATTGGCATAAACAAACA
 
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rJMSF007D08+          AGGATACTCGTCACTAGCATGGGTGAACAGTGGATGCCAGTAGGAATTTGGAATCCAAGT
                      ____________________________________________________________
consensus             AGGATACTCGTCACTAGCATGGGTGAACAGTGGATGCCAGTAGGAATTTGGAATCCAAGT
 
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rJMSF007D08+          GGCCATTTACTAATGCTTGTGAGCTATTTGAATCCGGACTACTTCATGAATGACTACTTC
                      ____________________________________________________________
consensus             GGCCATTTACTAATGCTTGTGAGCTATTTGAATCCGGACTACTTCATGAATGACTACTTC
 
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rJMSF007D08+          ATGAATGGTGAGATTGAAGATATTCAAGATAGTGATGTTCCTTTTTTCAAGAACGGGCCG
                      ____________________________________________________________
consensus             ATGAATGGTGAGATTGAAGATATTCAAGATAGTGATGTTCCTTTTTTCAAGAACGGGCCG
 
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rJMSF007D08+          GATCTAATTTCTATAGATTTAGTAACTCAGGAAAAGAAGATTATTTATACAAGTCAAGAA
                      ____________________________________________________________
consensus             GATCTAATTTCTATAGATTTAGTAACTCAGGAAAAGAAGATTATTTATACAAGTCAAGAA
 
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rJMSF007D08+          AAAAAGAGTGCCATTAATATTGTTTTGAATCCGAGTGGGGATCTTCAAGTTTGTAAGAAT
                      ____________________________________________________________
consensus             AAAAAGAGTGCCATTAATATTGTTTTGAATCCGAGTGGGGATCTTCAAGTTTGTAAGAAT