Contig 012516:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF006L07Sequence369004955 (2)ref|XP_006358076.1|2e-37PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g07650396012516 (3)gb|KHG06920.1|1e-39hypothetical protein F383_33692 [Gossypium arboreum]
JMSF041F08Sequence761000598 (9)ref|XP_011102070.1|7e-106PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein 708012516 (3)emb|CDO96888.1|1e-71unnamed protein product [Coffea canephora]
JMSF042J02Sequence675000598 (9)ref|XP_011102070.1|1e-92PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein 774012516 (3)emb|CBI30743.3|2e-93unnamed protein product [Vitis vinifera]

Alignment

This contig is upended


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rJMSF041F08+                                                          ATCAGCAATAAA
rJMSF042J02+                                           TTTCTTGCACGAAGAATCAGCAATAAA
                      ____________________________________________________________
consensus                                              TTTCTTGCACGAAGAATCAGCAATAAA
 
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rJMSF041F08+          AATTGTACATAGAGACATTAAACCAAACAATGTGTTGCTTGACAAAGAACTCAATCCAAA
rJMSF042J02+          AATTGTACATAGAGACATTAAACCAAACAATGTGTTGCTTGACAAAGAACTCAATCCAAA
                      ____________________________________________________________
consensus             AATTGTACATAGAGACATTAAACCAAACAATGTGTTGCTTGACAAAGAACTCAATCCAAA
 
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rJMSF041F08+          AATTTCTGATTTTGGTCTGGCTAAACTTAATGATGACGAGAATACACACGTCAGCACGAG
rJMSF042J02+          AATTTCTGATTTTGGTCTGGCTAAACTTAATGATGACGAGAATACACACGTCAGCACGAG
                      ____________________________________________________________
consensus             AATTTCTGATTTTGGTCTGGCTAAACTTAATGATGACGAGAATACACACGTCAGCACGAG
 
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rJMSF041F08+          AGTTGCTGGGACAACAGGATACATGGCTCCTGAATATGCACTGTGGGGTTACTTAACATT
rJMSF042J02+          AGTTGCTGGGACAACAGGATACATGGCTCCTGAATATGCACTGTGGGGTTACTTAACATT
                      ____________________________________________________________
consensus             AGTTGCTGGGACAACAGGATACATGGCTCCTGAATATGCACTGTGGGGTTACTTAACATT
 
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rJMSF041F08+          CAAAGCTGATGTCTATAGTTTTGGAGTTGTGGCACTAGAAATTG-TTCGGGGAAGAACAA
rJMSF042J02+          CAAAGCTGATGTCTATAGTTTTGGAGTTGTGGCACTAGAAATTGTTTCGGGGAAGAACAA
rJMSF006L07+                                                                    AA
                      ____________________________________________________________
consensus             CAAAGCTGATGTCTATAGTTTTGGAGTTGTGGCACTAGAAATTGTTTCGGGGAAGAACAA
 
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rJMSF041F08+          CAGGAAGTATCGTCCTAATGAGAACTACGTTTGCCTCCTTGATTGGGCACTTGATCTTCG
rJMSF042J02+          CAGGAAGTATCGTCCTAATGAGAACTACGTTTGCCTCCTTGATTGGGCACTTGATCTTCG
rJMSF006L07+          TGTGAAGTATCGGCATGATGAGAACTGTGTTTGCCTCCTTGATTGGGCACTTGATCTTCA
                      ____________________________________________________________
consensus             CAGGAAGTATCGTCCTAATGAGAACTACGTTTGCCTCCTTGATTGGGCACTTGATCTTCG
 
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rJMSF041F08+          ACAAAGAGGAAACCTAATGGAGCTAATAGATCCAAGATTAGGTTCTGATTTGGACAAAGA
rJMSF042J02+          ACAAAGAGGAAACCTAATGGAGCTAATAGATCCAAGATTAGGTTCTGATTTGGACAAAGA
rJMSF006L07+          TAAAAAAGGAAACCTNTNAGAGCTAATAGATCCAAGATTAGGTTCTAATTTCGATGGAGA
                      ____________________________________________________________
consensus             ACAAAGAGGAAACCTAATGGAGCTAATAGATCCAAGATTAGGTTCTGATTTGGACAAAGA
 
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rJMSF041F08+          AGAAGCACTCAGAATGATCAAAGTGGCTTTGCTTTGTACTAATCCTTCACCAGCCCTTAG
rJMSF042J02+          AGAAGCACTCAGAATGATCAAAGTGGCTTTGCTTTGTACTAATCCTTCACCAGCCCTTAG
rJMSF006L07+          ACAAGCACTCAGAATGATCAAGGTGGCTTTGCTCTGTACTAATTCTTCCCCAGCCCTTAG
                      ____________________________________________________________
consensus             AGAAGCACTCAGAATGATCAAAGTGGCTTTGCTTTGTACTAATCCTTCACCAGCCCTTAG
 
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rJMSF041F08+          GCCATCCATGTCTGCAGTAATAAGCATGCTTGAAGGCCATTGTGATATTCTTGAGTACAA
rJMSF042J02+          GCCATCCATGTCTGCAGTAATAAGCATGCTTGAAGGCCATTGTGATATTCTTGAGTACAA
rJMSF006L07+          GCCATCTATGTCTGCAGTAATCAACATGCTTGAAGGCCATGATGATATTCTTGAGTACAC
                      ____________________________________________________________
consensus             GCCATCCATGTCTGCAGTAATAAGCATGCTTGAAGGCCATTGTGATATTCTTGAGTACAA
 
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rJMSF041F08+          ATCTGATCTACACGAATTCAATTTTCAAGCCATGAGAGATCGTTATGA            
rJMSF042J02+          ATCTGATCTACACGAATTCAATTTTCAAGCCATGAGAGATCGTTATGA            
rJMSF006L07+          TTCTGATCTACATGAGTTCAATTTTCAAGCAATGAAAGATCGTTANGATGAAATGCCACA
                      ____________________________________________________________
consensus             ATCTGATCTACACGAATTCAATTTTCAAGCCATGAGAGATCGTTATGATGAAATGCCACA
 
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rJMSF006L07+          CAATTCAAGTAATTCTCCCTATAATGTAGATTTTTCTCCATATACAAATTGTCAATGAAT
                      ____________________________________________________________
consensus             CAATTCAAGTAATTCTCCCTATAATGTAGATTTTTCTCCATATACAAATTGTCAATGAAT