Contig 012514:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF005I05Sequence372024083499012514 (2)ref|XP_010096131.1|1e-58Elongation factor Tu GTP-binding domain-containing protein 1 [Morus notabilis]
JMSF040B16Sequence672012514 (2)emb|CDP15585.1|8e-110unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF040B16+                            GTTTCAGTTAGCCACTGCATCTGGCCCTTTGTGTGATGAACC
                      ____________________________________________________________
consensus                               GTTTCAGTTAGCCACTGCATCTGGCCCTTTGTGTGATGAACC
 
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rJMSF040B16+          TATGTGGGGTTTGGCGTTTGTTATCGAGGCATCAATTCATCCCTCGAACGGGCAGCCTAG
                      ____________________________________________________________
consensus             TATGTGGGGTTTGGCGTTTGTTATCGAGGCATCAATTCATCCCTCGAACGGGCAGCCTAG
 
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rJMSF040B16+          TGACGCTGACTCATCAGTTTACCAAGCGGAGCAGTATGGCATTTTCTCTGGACAAGTTAT
                      ____________________________________________________________
consensus             TGACGCTGACTCATCAGTTTACCAAGCGGAGCAGTATGGCATTTTCTCTGGACAAGTTAT
 
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rJMSF040B16+          GACGGCTGTCAAGGATGCCTGCAGAGCAGCTGTGCTTCAGAAGAAACCTCGAATTGTGGA
                      ____________________________________________________________
consensus             GACGGCTGTCAAGGATGCCTGCAGAGCAGCTGTGCTTCAGAAGAAACCTCGAATTGTGGA
 
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rJMSF040B16+          AGCCATGTATTTTTGCGAGTTGAACACCTCAACGGAGTATCTGGGCCCCATGTATGCCGT
rJMSF005I05+                                                   TGGGCCCCATGTATGCCGT
                      ____________________________________________________________
consensus             AGCCATGTATTTTTGCGAGTTGAACACCTCAACGGAGTATCTGGGCCCCATGTATGCCGT
 
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rJMSF040B16+          GCTTGCCAGAAGGCGAGCCCGAATTATGAAGGAAGAAATGCAAGAAGGTTCTGCATTGTT
rJMSF005I05+          GCTTNCCAGAAGNCGAGCCCGAATTATGAAGGAAGAAATGCAAGAAGGTTCTGCATTGTT
                      ____________________________________________________________
consensus             GCTTGCCAGAAGGCGAGCCCGAATTATGAAGGAAGAAATGCAAGAAGGTTCTGCATTGTT
 
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rJMSF040B16+          CACGGTGCACGCATACGTGCCAGTAGCAGAGAGCTATGGTTTTGCCGATGAGTTGAGGAG
rJMSF005I05+          CACGGTGCACGCATACGTGCCAGTAGCAGAGAGCTATGGTTTTGCCGATGAGTTGAGGAG
                      ____________________________________________________________
consensus             CACGGTGCACGCATACGTGCCAGTAGCAGAGAGCTATGGTTTTGCCGATGAGTTGAGGAG
 
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rJMSF040B16+          ATGGACCTCTGGCGGTGCAAGCGCTTTACTCGTTCTCAGCCATTGGGAAGCGCATCCCGA
rJMSF005I05+          ATGGACCTCTGGCGGTGCAAGCGCTTTACTCGTTCTCAGCCATTGGGAAGCGCATCCCGA
                      ____________________________________________________________
consensus             ATGGACCTCTGGCGGTGCAAGCGCTTTACTCGTTCTCAGCCATTGGGAAGCGCATCCCGA
 
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rJMSF040B16+          AGATCCTTTCTTCGTACCCAAGACCGAAGAAGAGCTAGAAGAGTTTGGAGAGGGTGCCGC
rJMSF005I05+          AGATCCTTTCTTCGTACCCAAGACCGAAGAAGAGCTAGAAGAGTTTGGAGAGGGTGCCGC
                      ____________________________________________________________
consensus             AGATCCTTTCTTCGTACCCAAGACCGAAGAAGAGCTAGAAGAGTTTGGAGAGGGTGCCGC
 
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rJMSF040B16+          TGTCCCACGCAACACCGCAAGAAAACTTATCGATGATGTGAGACGGAGGAAGGGTCTTCC
rJMSF005I05+          TGTCCCACGCAACACCGCAAGAAAACTTATCGATGATGTGAGACGGAGGAAGGGTCTTCC
                      ____________________________________________________________
consensus             TGTCCCACGCAACACCGCAAGAAAACTTATCGATGATGTGAGACGGAGGAAGGGTCTTCC
 
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rJMSF040B16+          TGTGGAGGAAAAGGTAGTCCAACATGCAACCAAACAAAGGACCTTGGCTCGGAA      
rJMSF005I05+          TGTGGAGGAAAAGGTAGTCCAACATGCAACCAAACAAAGGACCTTGGCTCGGAAGGTGTA
                      ____________________________________________________________
consensus             TGTGGAGGAAAAGGTAGTCCAACATGCAACCAAACAAAGGACCTTGGCTCGGAAGGTGTA
 
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rJMSF005I05+          GAAGAATATATACAACAAAAACATGGTTTNGTAATTGTTAGTTTCTTGTTCNTTATTCTC
                      ____________________________________________________________
consensus             GAAGAATATATACAACAAAAACATGGTTTNGTAATTGTTAGTTTCTTGTTCNTTATTCTC
 
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rJMSF005I05+          TAGGGAAATGTGGAAAAAAACAAAAATTGAAAGAAAAGAGAAACCAGATATATCCAATGT
                      ____________________________________________________________
consensus             TAGGGAAATGTGGAAAAAAACAAAAATTGAAAGAAAAGAGAAACCAGATATATCCAATGT