Contig 012512:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF009P08Sequence140005079 (5)745012512 (4)ref|XP_002299170.1|2e-84DNAJ heat shock N-terminal domain-containing family protein [Populus trichocarp
JMFF015L18Sequence568005079 (5)ref|XP_006347682.1|3e-28PREDICTED: dnaJ homolog subfamily C member 2-like [Solanum tuberosum]660012512 (4)gb|KJB67816.1|4e-80hypothetical protein B456_010G212600 [Gossypium raimondii]
JMSF005D10Sequence251012986 (7)ref|XP_004232878.1|5e-06PREDICTED: 50S ribosomal protein L21, mitochondrial [Solanum lycopersicum]450012512 (4)ref|XP_011020504.1|1e-26PREDICTED: dnaJ homolog subfamily C member 2-like [Populus euphratica] ref|XP_01
JMSF022H10Sequence666005079 (5)ref|XP_009780057.1|2e-28PREDICTED: dnaJ homolog subfamily C member 2-like [Nicotiana sylvestris]794012512 (4)ref|XP_002299170.1|9e-66DNAJ heat shock N-terminal domain-containing family protein [Populus trichocarp

Alignment

This contig is upended


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rJMSF022H10+                                             AGNATATGCANGGATACGTATGCTT
                      ____________________________________________________________
consensus                                                AGNATATGCANGGATACGTATGCTT
 
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rJMSF022H10+          GTTGATAATGCNTATAAAAGAGACCCCAGAATTGTGAGAAGAAAAGAGGAGGAAAAAGCT
                      ____________________________________________________________
consensus             GTTGATAATGCNTATAAAAGAGACCCCAGAATTGTGAGAAGAAAAGAGGAGGAAAAAGCT
 
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rJMSF022H10+          GAGAAGCAGAGGAAAAAGGAGGCCAAAGTTTTGGCAAAGAAATTGCAAGAGGAAGAAGCA
                      ____________________________________________________________
consensus             GAGAAGCAGAGGAAAAAGGAGGCCAAAGTTTTGGCAAAGAAATTGCAAGAGGAAGAAGCA
 
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rJMSF022H10+          GCCAGAATTGCCGAAGAGGAGAGGCGTAGAAAAGAGGAAGAGGAAAAACGTGCTGCTGAA
                      ____________________________________________________________
consensus             GCCAGAATTGCCGAAGAGGAGAGGCGTAGAAAAGAGGAAGAGGAAAAACGTGCTGCTGAA
 
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rJMSF022H10+          GCTGCTTTGCAGCAAAAGAAATTGAAAGAGAAAGAGAAGAAACTATTGCGCAAAGAGCGA
                      ____________________________________________________________
consensus             GCTGCTTTGCAGCAAAAGAAATTGAAAGAGAAAGAGAAGAAACTATTGCGCAAAGAGCGA
 
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rJMSF022H10+          ACCCGTTTGCGTACAATTTCAGCACCTTTGTTGTCTGAGAACTTACTTGGCCTCACAAAT
                      ____________________________________________________________
consensus             ACCCGTTTGCGTACAATTTCAGCACCTTTGTTGTCTGAGAACTTACTTGGCCTCACAAAT
 
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rJMSF022H10+          GATGATGTGGAACATCTATGTACTGCTTTAAATATTGATCAGCTGAAGAATTTGTGTGAT
                      ____________________________________________________________
consensus             GATGATGTGGAACATCTATGTACTGCTTTAAATATTGATCAGCTGAAGAATTTGTGTGAT
 
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rJMSF022H10+          GGGATTGAGGGAAGGGTAGGGATTGCAAAAGCAGAGCTTCTCAGGGAGGCACTTGGACGT
                      ____________________________________________________________
consensus             GGGATTGAGGGAAGGGTAGGGATTGCAAAAGCAGAGCTTCTCAGGGAGGCACTTGGACGT
 
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rJMSF022H10+          GATGACAACTCAAAGGATGAGAAACTGAATGAGAAGAAAAATGTTAAACATGAGAAGAAA
rJMFF009P08+                         GATGAGAAACTGAATGAGAAGAAAAATGTTAANCATGAGAAGAAA
                      ____________________________________________________________
consensus             GATGACAACTCAAAGGATGAGAAACTGAATGAGAAGAAAAATGTTAAACATGAGAAGAAA
 
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rJMSF022H10+          AATGTTCAACAAAATGGTAGTTCAGCAGCTAATGGACAGAACCCATTCAGCAGCAATGAG
rJMFF009P08+          AATGTTCAACAAAATGGTAGTTCAGCAGCTAATGGACAGAGCCCATTCAGCAGCAATGAG
rJMFF015L18+                                                          AGCAGCAATGAG
                      ____________________________________________________________
consensus             AATGTTCAACAAAATGGTAGTTCAGCAGCTAATGGACAGAGCCCATTCAGCAGCAATGAG
 
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rJMSF022H10+          AAAAAGGAGAGAGAGTGGACGAAAGAAGAAATTGATCTTTTGAGAAAGGGAGTGCAGAAA
rJMFF009P08+          AAAAAGGAGAGAGAGTGGACGAAAGAAGAAATTGATCTTTTGAGAAAGGGAGTGCAGAAA
rJMFF015L18+          AAAAAGGAGAGAGAGTGGACGAAAGAAGAAATTGATCTTTTGAGAAAGGGAGTGCAGAAA
                      ____________________________________________________________
consensus             AAAAAGGAGAGAGAGTGGACGAAAGAAGAAATTGATCTTTTGAGAAAGGGAGTGCAGAAA
 
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rJMSF022H10+          TATCCTAAAGGAACGTCTCGGAGATGGGAAGTTATCTCGGAGTACATTGGTACTGGAAGG
rJMFF009P08+          TATCCTAAAGGAACGTCTCGGAGATGGGAAGTTATCTCGGAGTACATTGGTACTGGAAGG
rJMFF015L18+          TATCCTAAAGGAACGTCTCGGAGATGGGAAGTTATCTCGGAGTACATTGGTACTGGAAGG
                      ____________________________________________________________
consensus             TATCCTAAAGGAACGTCTCGGAGATGGGAAGTTATCTCGGAGTACATTGGTACTGGAAGG
 
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rJMSF022H10+          ACAGTTGAGGAGATTCTAAAGGCCACAAAAACTGTTCTTCTTCAGAAACCAGACTCTGCT
rJMFF009P08+          ACAGTTGAGGAGATTCTAAAGGCCACAAAAACTGTTCTTCTTCAGAAACCAGACTCTGCT
rJMFF015L18+          ACAGTTGAGGAGATTCTAAAGGCCACAAAAACTGTTNTTCTTCAGAAACCAGACTCTGCT
                      ____________________________________________________________
consensus             ACAGTTGAGGAGATTCTAAAGGCCACAAAAACTGTTCTTCTTCAGAAACCAGACTCTGCT
 
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rJMSF022H10+          AAAGCTTTCGACTCTTTCCTTGAGAAGAGAAAGCCAGCACAAACAAT             
rJMFF009P08+          AAAGCTTTCGACTCTTTCCTTGAGAAGAGAAAGCCAGCACAAACAATTGCATCCCCTCTT
rJMFF015L18+          AAAGCTTTCGANTCTTTCCTTGAGAAGAGAAAGCCAGCACAAACAATTGCATCCCCTCTT
                      ____________________________________________________________
consensus             AAAGCTTTCGACTCTTTCCTTGAGAAGAGAAAGCCAGCACAAACAATTGCATCCCCTCTT
 
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rJMFF009P08+          ACAACGAGGGAGGAAGTGGAGGGAACATCAAATGCCAACAAAACTGAAAACAATTCTGGC
rJMFF015L18+          ACAANGAGGGAGGAAGTGGAGGGAACATCAAATGCCAACAAAACTGAAAACAATTCTGGC
rJMSF005D10+                                        AATGCCAACAAAACTGAAAACAATTCTGGC
                      ____________________________________________________________
consensus             ACAACGAGGGAGGAAGTGGAGGGAACATCAAATGCCAACAAAACTGAAAACAATTCTGGC
 
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rJMFF009P08+          AGTAAGGTGCCAAATTCACAGAGCTCTCCCAGCCAAAGTTCAAGCTGCCAAAACCCCCCT
rJMFF015L18+          AGTAAGGTGCCAAATTCACAGAGCTCTCCCAGCCAAAGTTCAAGCTGCCAAAACCCCCCT
rJMSF005D10+          AGTANGGTGCCAAATTCACAGAGCTCTCCCAGCCAAAGTTCAAGCTGCCAAAACCCCCCT
                      ____________________________________________________________
consensus             AGTAAGGTGCCAAATTCACAGAGCTCTCCCAGCCAAAGTTCAAGCTGCCAAAACCCCCCT
 
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rJMFF009P08+          ACTGATGACCTTGCTGCAAATGTGGCTGAAGGAGATGCATGGTCTGTAGTTCAAGAAAGG
rJMFF015L18+          ACTGATGACCTTGCTGCAAATGTGGCTGAAGGAGATGCATGGTCTGTAGTTCAAGAAAGG
rJMSF005D10+          ACTGATGACCTTGCTGCAAATGTGGCTGAAGGAGATGCATGGTCTGTAGTTCAAGAAAGG
                      ____________________________________________________________
consensus             ACTGATGACCTTGCTGCAAATGTGGCTGAAGGAGATGCATGGTCTGTAGTTCAAGAAAGG
 
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rJMFF009P08+          GCACTGGTTCAAGCTCTCAAAACCTTTCCAAAGGAAGTCAGCCAACGCTGGGAACGGGTT
rJMFF015L18+          GCACTGGTTCAAGCTCTCAAAACCTTTCCAAAGGAAGTCAGCCAACGCTGGGAACGGGTT
rJMSF005D10+          GCACTGGTTCAAGCTCTCAAAACCTTTCCAAAGGAAGTCAGCCAACGCTGGGAACGGGTT
                      ____________________________________________________________
consensus             GCACTGGTTCAAGCTCTCAAAACCTTTCCAAAGGAAGTCAGCCAACGCTGGGAACGGGTT
 
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rJMFF009P08+          GCAGCTGCTGTTCCTGGGAAAACCGTGAACCAGTGTAAAAAGAAATTTACACTACTAAAA
rJMFF015L18+          GCAGCTGCTGTTCCTGGGAAAACCGTGAACCAGTGTAAAAAGAAATTTACACTACTAAAA
rJMSF005D10+          GCAGCTGCTGTTCCTGGGAAAACCGTGAACCAGTGTAAAAAGAAATTTACACTACTAAAA
                      ____________________________________________________________
consensus             GCAGCTGCTGTTCCTGGGAAAACCGTGAACCAGTGTAAAAAGAAATTTACACTACTAAAA
 
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rJMFF009P08+          GAGAGCTTCAGGAACAAGAAAAATGCAGCATAATATGTTCTCTTCTATGCTGGATTGGAT
rJMFF015L18+          GAGAGCTTCAGGAACAAGAAAAATGCAGCATAATATGTTCTCTTCTATGCTGGATTGGAT
rJMSF005D10+          GAGAGCTTCNGGAACAAGAAAAATGCAGCATAATANGTTCTCTTCTATGCTGGATTGGAT
                      ____________________________________________________________
consensus             GAGAGCTTCAGGAACAAGAAAAATGCAGCATAATATGTTCTCTTCTATGCTGGATTGGAT
 
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rJMFF009P08+          TCCAGTTTTCTGTCCCATTCTTTTTGCTTGATTTTGCAGA                    
rJMFF015L18+          TCCAGTTTTCTGTCCCATTCTTTTTGCTTGATTTTGCAGA                    
rJMSF005D10+          TCCAGTTTTCNGTCCCATTCTTTCTGCTTGATTTTGCAGAAGCTACGCTAGAATTCATTG
                      ____________________________________________________________
consensus             TCCAGTTTTCTGTCCCATTCTTTTTGCTTGATTTTGCAGAAGCTACGCTAGAATTCATTG
 
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rJMSF005D10+          TNATCCCTTTACAGTTATTATTATTATTATTATGAGCTATAAAATTTACTTATTCAAATA
                      ____________________________________________________________
consensus             TNATCCCTTTACAGTTATTATTATTATTATTATGAGCTATAAAATTTACTTATTCAAATA