Contig 012509:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS081E03Sequence627012509 (4)ref|XP_009762973.1|1e-74PREDICTED: E3 ubiquitin-protein ligase At1g63170-like [Nicotiana sylvestris]
JMSF002O07Sequence225010553 (4)710012509 (4)ref|XP_009762973.1|6e-79PREDICTED: E3 ubiquitin-protein ligase At1g63170-like [Nicotiana sylvestris]
JMSF004K13Sequence453006369 (12)ref|XP_006436063.1|4e-38hypothetical protein CICLE_v10032534mg [Citrus clementina] ref|XP_006486051.1| P228012509 (4)
JMSF004M15Sequence204010553 (4)357012509 (4)ref|XP_009762973.1|8e-16PREDICTED: E3 ubiquitin-protein ligase At1g63170-like [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF002O07+                                                                 CCCTC
                      ____________________________________________________________
consensus                                                                    CCCTC
 
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JMFS081E03-                                                   GTTCTTTGTTGTTATCTGCG
rJMSF002O07+          AACTTTACTGGCTTTGCATTACATTCTTGGCATTTGATGTGTTCTTTGTTGTTATCTGCG
                      ____________________________________________________________
consensus             AACTTTACTGGCTTTGCATTACATTCTTGGCATTTGATGTGTTCTTTGTTGTTATCTGCG
 
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JMFS081E03-           TTGCTGTGGCTTGTGTCATTGGAATTGCTGTTTGCTGTTGTCTACCATGTATAATTGCAA
rJMSF002O07+          TTGCTGTGGCTTGTGTCATTGGAATTGCTGTTTGCTGTTGTCTACCATGTATAATTGCAA
                      ____________________________________________________________
consensus             TTGCTGTGGCTTGTGTCATTGGAATTGCTGTTTGCTGTTGTCTACCATGTATAATTGCAA
 
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JMFS081E03-           TCTTATATGCAGTGGCGGATCAGGAGGGAGCAACTAAGGAAGACATTGAACAGTTGACCA
rJMSF002O07+          TCTTATATGCAGTGGCGGATCAGGAGGGAGCAACTAAGGAAGACATTGAACAGTTGACCA
                      ____________________________________________________________
consensus             TCTTATATGCAGTGGCGGATCAGGAGGGAGCAACTAAGGAAGACATTGAACAGTTGACCA
 
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JMFS081E03-           AGTACAAATTCAGGAAACTTGGTGATTTTGAGAAACAAAATGGTGAGATTCAAGAGTCAT
rJMSF002O07+          AGTACAAATTCAGGAAACTTGGTGATTTTGAGAAACAAAATGGTGAGATTCAAGAGTCAT
                      ____________________________________________________________
consensus             AGTACAAATTCAGGAAACTTGGTGATTTTGAGAAACAAAATGGTGAGATTCAAGAGTCAT
 
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JMFS081E03-           TTGGAGGGGTAATGATTGAATGCGATACTGATTCACCCACTGAACATGTTCTTTCTGCGG
rJMSF002O07+          TTGGAGGGGTAATGATTGAATGCGATACTGATTCACCCACTGAACATGTTCTTTCTGCGG
                      ____________________________________________________________
consensus             TTGGAGGGGTAATGATTGAATGCGATACTGATTCACCCACTGAACATGTTCTTTCTGCGG
 
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JMFS081E03-           AGGATGCTGAATGCTGTATCTGCCTCTGTTCCTATGACGATGGCATTGAACTTCGTGAAC
rJMSF002O07+          AGGATGCTGAATGCTGTATCTGCCTCTGTTCCTATGACGATGGCATTGAACTTCGTGAAC
                      ____________________________________________________________
consensus             AGGATGCTGAATGCTGTATCTGCCTCTGTTCCTATGACGATGGCATTGAACTTCGTGAAC
 
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JMFS081E03-           TCCCGTGCCGTCACCATTTTCATTGTGCCTGTATAGACAAGTGGTTGTTCATAAATGCCA
rJMSF002O07+          TCCCGTGCCGTCACCATTTTCATTGTGCCTGTATAGACAAGTGGTTGTTCATAAATGCCA
rJMSF004M15+            CCGTGCCGTCACCATTTTCATTGTGCCTGTATAGACAAGTGGTTGTTCATAAATGCCA
                      ____________________________________________________________
consensus             TCCCGTGCCGTCACCATTTTCATTGTGCCTGTATAGACAAGTGGTTGTTCATAAATGCCA
 
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JMFS081E03-           CCTGTCCTCTCTGCAAGTACAATATCCTCAAAAATGGCAACCATAGCGGCAGGGAAGATG
rJMSF002O07+          CCTGTCCTCTCTGCAAGTACAATATCCTCAAAAATGGCAACCATAGCGGCAGGGAAGATG
rJMSF004M15+          CCTGTCCTCTCTGCAAGTACAATATCNTCAAAAATGGCAACCATAGCGGCAGGGAAGATG
                      ____________________________________________________________
consensus             CCTGTCCTCTCTGCAAGTACAATATCCTCAAAAATGGCAACCATAGCGGCAGGGAAGATG
 
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JMFS081E03-           TCTGAGGACTCGAACGAAAAGCCTCGGTGGATCCAGCAAAGCTCTGCCAAACAGCAATAG
rJMSF002O07+          TCTGAGGACTCGAACGAAAAGCCTCGGTGGATCCAGCAAAGCTCTGCCAAACAGCAATAG
rJMSF004M15+          TCTGAGGACTCGAACGAAAAGCCTCGGTGGATCCAGCAAAGCTCTGCCAAACAGCAATAG
rJMSF004K13+                      AACGAAAAGCCTCGGTGGATCCAGCAAAGCTNTGNCAAACAGCNATAG
                      ____________________________________________________________
consensus             TCTGAGGACTCGAACGAAAAGCCTCGGTGGATCCAGCAAAGCTCTGCCAAACAGCAATAG
 
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JMFS081E03-           GTGCGTCGGGTTTTCTACTGGATCCGTGCACCAACTTGGCTGCTACTTGTGTGTGTATTT
rJMSF002O07+          GTGCGTCGGGTTTTCTACTGGATCCGTGCACCAACTTGGCTGCTACTTGTGTGTGTATTT
rJMSF004M15+          GTGCGTCGGGTTTTCTACTGGATCCGTGCACCAACTTGGCTGCTACTTGTGTGTGTATTT
rJMSF004K13+          GTGCGTCGGGTTTTATACTGGATCCGTGCACCAACTTGGCTGCNACTNGTGTGNGTATNN
                      ____________________________________________________________
consensus             GTGCGTCGGGTTTTCTACTGGATCCGTGCACCAACTTGGCTGCTACTTGTGTGTGTATTT
 
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JMFS081E03-           TAGGCTTTGCCGCACTGATACCTAGTTCTTTCATGGGCTTATTATTGATGCATATGG   
rJMSF002O07+          TAGGCTTTGCCGCACTGATACCTAGTTCTTTCATGGGCTTATTATTGATGCATATGGCTC
rJMSF004M15+          TAGGCTTTGCCGCACTGATACCTAGTTCTTTCATGGGCTTATTATTGATGCATATGGCTC
rJMSF004K13+          TAGGCTTTGCCGCACTGATACCTAGTTCTTTCATGGGCNTATTAATGATGCATATGGCTC
                      ____________________________________________________________
consensus             TAGGCTTTGCCGCACTGATACCTAGTTCTTTCATGGGCTTATTATTGATGCATATGGCTC
 
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rJMSF002O07+          ATTGTTTCGTTTAGTTA                                           
rJMSF004M15+          ATTGTTTCGTTTAGTTA                                           
rJMSF004K13+          ATTGTTTCGTTTAGTTATCTGTGAACGTACTCGTTCNTCGTGCATACATATAAANCTATA
                      ____________________________________________________________
consensus             ATTGTTTCGTTTAGTTATCTGTGAACGTACTCGTTCNTCGTGCATACATATAAANCTATA