Contig 012508:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFS066F06-                                                 GCAAACAGGGCTTACCAGAAGC
                      ____________________________________________________________
consensus                                                   GCAAACAGGGCTTACCAGAAGC
 
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JMFS066F06-           CAGGTGTCGAACTGGTTCATCAATGCTCGAGTTCGACTGTGGAAGCCAATGGTGGAGGAG
                      ____________________________________________________________
consensus             CAGGTGTCGAACTGGTTCATCAATGCTCGAGTTCGACTGTGGAAGCCAATGGTGGAGGAG
 
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JMFS066F06-           ATGTACACGGAAGAAATGAAAGGCCAAGAACAGTACGGCGGCTCCGGCGAAAACGCCGCC
                      ____________________________________________________________
consensus             ATGTACACGGAAGAAATGAAAGGCCAAGAACAGTACGGCGGCTCCGGCGAAAACGCCGCC
 
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JMFS066F06-           GCAGCAGGAAAGAGAAATGAAGCTAATAAGGAGATTGGCTCCAATAATTCTACTGAAAAG
                      ____________________________________________________________
consensus             GCAGCAGGAAAGAGAAATGAAGCTAATAAGGAGATTGGCTCCAATAATTCTACTGAAAAG
 
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JMFS066F06-           CAAGAAAAGACGAGCAATATTCAAGATAATAATAATAATAACAATGCTTCTCCTACTGAA
                      ____________________________________________________________
consensus             CAAGAAAAGACGAGCAATATTCAAGATAATAATAATAATAACAATGCTTCTCCTACTGAA
 
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JMFS066F06-           ATTTCCACTTCCATTATGACTGCATCTCCCACCGGAGTTTCATCTCTTCAGCCTCAAGGC
                      ____________________________________________________________
consensus             ATTTCCACTTCCATTATGACTGCATCTCCCACCGGAGTTTCATCTCTTCAGCCTCAAGGC
 
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JMFS066F06-           GGCGGCGGCGGCGCTTTCTCCTTCATCAACACGCTAAACATGGAAAACGCCGGCGAGAGG
                      ____________________________________________________________
consensus             GGCGGCGGCGGCGCTTTCTCCTTCATCAACACGCTAAACATGGAAAACGCCGGCGAGAGG
 
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JMFS066F06-           AACGGGAAGAAACCGAGGAACGACAACATCCAAAGCTCCCCCAGCAGTATTCTCTCGGTG
                      ____________________________________________________________
consensus             AACGGGAAGAAACCGAGGAACGACAACATCCAAAGCTCCCCCAGCAGTATTCTCTCGGTG
 
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JMFS066F06-           GACATGGACATGAAGTCCGCCGCCGGCGAGGCCAACAAAGGGTACAACCACCACAAGTTC
rJMSF009M18+                                                                 AGTTC
rJMSF021P16+                                               AAGGGTACAACCACCACAAGTTC
                      ____________________________________________________________
consensus             GACATGGACATGAAGTCCGCCGCCGGCGAGGCCAACAAAGGGTACAACCACCACAAGTTC
 
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JMFS066F06-           ACCGCCGACAGAACACCGGCCGCCGCCGCCGAAAACTTCCCTGACCTAATGGCCGCCGCA
rJMSF009M18+          ACCGCCGACAGNACACCGGCCGCCGCCGCCGAAAACTTCCCTGACCTAATGGCCGCCGCA
rJMSF021P16+          ACCGCCGACAGAACACCGGCCGCCGCCGCCGAAAACTTCCCTGACCTAATGGCCGCCGCA
                      ____________________________________________________________
consensus             ACCGCCGACAGAACACCGGCCGCCGCCGCCGAAAACTTCCCTGACCTAATGGCCGCCGCA
 
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JMFS066F06-           AACACCGGCGGATTCGGCGGATTCACCATCGGAGACTTCGGAAGGTTCAACCCGGAAAAT
rJMSF009M18+          AACACCGGCGGATTCGGCGGATTCACCATCGGAGACTTCGGAAGGTTCAACCCGGAAAAT
rJMSF021P16+          AACACCGGCGGATTCGGCGGATTCACCATCGGAGACTTCGGAAGGTTCAACCCGGAAAAT
                      ____________________________________________________________
consensus             AACACCGGCGGATTCGGCGGATTCACCATCGGAGACTTCGGAAGGTTCAACCCGGAAAAT
 
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rJMSF009M18+          CTAACCGCCGGGTTTCATCACGGAAACGGCGTCTCCCTCACCCTCGGCCTCCCGCCGTCT
rJMSF021P16+          CTAACCGCCGGGTTTCATCACGGAAACGGCGTCTCCCTCACCCTCGGCCTCCCGCCGTCT
                      ____________________________________________________________
consensus             CTAACCGCCGGGTTTCATCACGGAAACGGCGTCTCCCTCACCCTCGGCCTCCCGCCGTCT
 
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rJMSF009M18+          GAAAACCTAGCCGTCTCCGGTAGCCAACAAAATTACCTTTCTACCCACCAAGACATGGAG
rJMSF021P16+          GAAAACCTAGCCGTCTCCGGTAGCCAACAAAATTACCTTTCTACCCACCAAGACATGGAG
                      ____________________________________________________________
consensus             GAAAACCTAGCCGTCTCCGGTAGCCAACAAAATTACCTTTCTACCCACCAAGACATGGAG
 
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rJMSF009M18+          TTGGGGCGGAGACTTGAGATGGGCAGGATGGGAATAGACAACAATCCTCAACCTTCTTCC
rJMSF021P16+          TTGGGGCGGAGACTTGAGATGGGCAGGATGGGAATAGACAACAATCCTCAACCTTCTTCC
                      ____________________________________________________________
consensus             TTGGGGCGGAGACTTGAGATGGGCAGGATGGGAATAGACAACAATCCTCAACCTTCTTCC
 
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rJMSF009M18+          CACTCAAACATCAATGGCGGCTATGAAACCATAGATTTCCAGAATGGCAAGCGCTTTGCA
rJMSF021P16+          CACTCAAACATCAATGGCGGCTATGAAACCATAGATTTCCAGAATGGCAAGCGCTTTGCA
                      ____________________________________________________________
consensus             CACTCAAACATCAATGGCGGCTATGAAACCATAGATTTCCAGAATGGCAAGCGCTTTGCA
 
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rJMSF009M18+          GCTCAACTCTTACCAGATTTTGTAGCGTGAAAAGGGCTTTAATTTGCAGGTAATTTAATA
rJMSF021P16+          GCTCAACTCTTACCAGATTTTGTAGCGTGAAAAGGGCTTTAATTTGCAGGTAATTTAATA
rJMSF004D04+            TCAACTCTTACCAGATTTTGTAGCGTGAAAAGGGCTNCAATTTGCAGGTAATTTAATA
                      ____________________________________________________________
consensus             GCTCAACTCTTACCAGATTTTGTAGCGTGAAAAGGGCTTTAATTTGCAGGTAATTTAATA
 
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rJMSF009M18+          TCAAGTGGTGCATGGAATCAATCAAAGAAATGGACAGAAAAAGTAGTATATAATTTTCAT
rJMSF021P16+          TCAAGTGGTGCATGGAATCAATCAAAGAAATGGACAGAAAAAGTAGTATATAATTTTCAT
rJMSF004D04+          TCAAGCGGTGCACGGNATCANTCAAANAAACGGACANAAAAAGTAGTATATAATTNTCAT
                      ____________________________________________________________
consensus             TCAAGTGGTGCATGGAATCAATCAAAGAAATGGACAGAAAAAGTAGTATATAATTTTCAT
 
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rJMSF009M18+          TAATTATTACGAACATCTTCCATAATCTTGTACCTATATATACACACATATAT       
rJMSF021P16+          TAATTATTACGAACATCTTCCATAATCTTGTACCTATATATACACACATATAT       
rJMSF004D04+          NAATTNTTACGAACCTCTTCCATCATCTTGNACCTATATATACACACATATATATAGCTT
                      ____________________________________________________________
consensus             TAATTATTACGAACATCTTCCATAATCTTGTACCTATATATACACACATATATATAGCTT