Contig 012506:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF003M17+                                                                AGGCTT
                      ____________________________________________________________
consensus                                                                   AGGCTT
 
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rJMSF036D05+                            TCAATGTGGTGAGTGGTTGGAGACTTGTGAGTTGTGAGTTGA
rJMSF003M17+          GAACCCTGTTACTTTGTGTCAATGTGGTGAGTGGTTGGAGACTTGTGAGTTGTGAGTTGA
                      ____________________________________________________________
consensus             GAACCCTGTTACTTTGTGTCAATGTGGTGAGTGGTTGGAGACTTGTGAGTTGTGAGTTGA
 
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rJMSF036D05+          GACATTTATTGTTTGACACCCTGTTTCAGGTTGCTACAAATGTAGGGTTTGAGCTACCAC
rJMSF003M17+          GACATTTATTGTTTGACACCCTGTTTCAGGTTGCTACAAATGTAGGGTTTGAGCTACCAC
                      ____________________________________________________________
consensus             GACATTTATTGTTTGACACCCTGTTTCAGGTTGCTACAAATGTAGGGTTTGAGCTACCAC
 
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rJMSF036D05+          CACCTGGACAGTATGCAGTTGGGATGTTCTTTTTGCCTACTTCTGAAAGCCGAAGTGAGC
rJMSF003M17+          CACCTGGACAGTATGCAGTTGGGATGTTCTTTTTGCCTACTTCTGAAAGCCGAAGTGAGC
                      ____________________________________________________________
consensus             CACCTGGACAGTATGCAGTTGGGATGTTCTTTTTGCCTACTTCTGAAAGCCGAAGTGAGC
 
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rJMSF036D05+          AAAGTAAAATTGTATTTACAAAGGTAATCTAAGCCCCAAAGGTTCTTTTATAATCAGCAT
rJMSF003M17+          AAAGTAAAATTGTATTTACAAAGGTAATCTAAGCCCCAAAGGTTCTTTTATAATCAGCAT
                      ____________________________________________________________
consensus             AAAGTAAAATTGTATTTACAAAGGTAATCTAAGCCCCAAAGGTTCTTTTATAATCAGCAT
 
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rJMSF036D05+          GTTATGCCATTTTTCTTTATTGTTCCATTGGTCTTAATTGTTTAGAGTCATGATGAAGTG
rJMSF003M17+          GTTATGCCATTTTTCTTTATTGTTCCATTGGTCTTAATTGTTTAGAGTCATGATGAAGTG
                      ____________________________________________________________
consensus             GTTATGCCATTTTTCTTTATTGTTCCATTGGTCTTAATTGTTTAGAGTCATGATGAAGTG
 
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rJMSF036D05+          AGGCTGGTTTACTTGACCATCATGTTTACATTATGCTTATTGCTTCTAAAATTTTGTGTT
rJMSF003M17+          AGGCTGGTTTACTTGACCATCATGTTTACATTATGCTTATTGCTTCTAAAATTTTGTGTT
                      ____________________________________________________________
consensus             AGGCTGGTTTACTTGACCATCATGTTTACATTATGCTTATTGCTTCTAAAATTTTGTGTT
 
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rJMSF036D05+          TGCTTGTAGGTGGCTGAATCGCTGGGTCATACAGTCCGTTGATTCGAGCTGCATTAAACC
rJMSF003M17+          TGCTTGTAGGTGGCTGAATCGCTGGGTCATACAGTCCGTTGATTCGAGCTGCATTAAACC
                      ____________________________________________________________
consensus             TGCTTGTAGGTGGCTGAATCGCTGGGTCATACAGTCCGTTGATTCGAGCTGCATTAAACC
 
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rJMSF036D05+          TCCAATATGGTGGTTTTAGAGATTTCTATATATGTTCTCTTTCCTCAAGGTGAGTTTGTC
rJMSF003M17+          TCCAATATGGTGGTTTTAGAGATTTCTATATATGTTCTCTTTCCTCAAGGTGAGTTTGTC
                      ____________________________________________________________
consensus             TCCAATATGGTGGTTTTAGAGATTTCTATATATGTTCTCTTTCCTCAAGGTGAGTTTGTC
 
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rJMSF036D05+          TTGAGTTTTACTTAGTGGCTATTGCATTTCTGTGCTACAATGTCTCAAATTTTGATTTGC
rJMSF003M17+          TTGAGTTTTACTTAGTGGCTATTGCATTTCTGTGCTACAATGTCTCAAATTTTGATTTGC
                      ____________________________________________________________
consensus             TTGAGTTTTACTTAGTGGCTATTGCATTTCTGTGCTACAATGTCTCAAATTTTGATTTGC
 
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rJMSF036D05+          TTCCTGTAGGACTGTTGTCTACAAATTAAAGGCCAGTTAAAGCCTGATCAGTTGCAGGAA
rJMSF003M17+          TTCCTGTAGGACTGTTGTCTACAAATTAAAGGCCAGTTAAAGCCTGATCAGTTGCAGGAA
                      ____________________________________________________________
consensus             TTCCTGTAGGACTGTTGTCTACAAATTAAAGGCCAGTTAAAGCCTGATCAGTTGCAGGAA
 
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rJMSF036D05+          TACTACTATGCAGATCTTGGGAATCAAAGGTGGAACCATCATGTAGAAGTATCTGAAAAT
rJMSF003M17+          TACTACTATGCAGATCTTGGGAATCAAAGGTGGAACCATCATGTAGAAGTATCTGAAAAT
                      ____________________________________________________________
consensus             TACTACTATGCAGATCTTGGGAATCAAAGGTGGAACCATCATGTAGAAGTATCTGAAAAT
 
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rJMSF036D05+          CATGTGTA-CATGATTACTGTAGTGTAGTCGTTAGAGAGACTAA                
rJMSF003M17+          CATGTGTACCATGATTACTGTAGTGTAGTCGTTAGAGAGACTAACATGTTAAACCTTTCG
                      ____________________________________________________________
consensus             CATGTGTACCATGATTACTGTAGTGTAGTCGTTAGAGAGACTAACATGTTAAACCTTTCG