Contig 012506:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF003M17Sequence279007979 (2)726012506 (2)ref|XP_010261570.1|2e-24PREDICTED: glutamate synthase 1 [NADH], chloroplastic [Nelumbo nucifera]
JMSF036D05Sequence679007979 (2)702012506 (2)ref|XP_010261570.1|6e-25PREDICTED: glutamate synthase 1 [NADH], chloroplastic [Nelumbo nucifera]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF003M17+ AGGCTT
                      ____________________________________________________________
consensus AGGCTT
 
. : . : . : . : . : . :
rJMSF036D05+ TCAATGTGGTGAGTGGTTGGAGACTTGTGAGTTGTGAGTTGA
rJMSF003M17+ GAACCCTGTTACTTTGTGTCAATGTGGTGAGTGGTTGGAGACTTGTGAGTTGTGAGTTGA
                      ____________________________________________________________
consensus GAACCCTGTTACTTTGTGTCAATGTGGTGAGTGGTTGGAGACTTGTGAGTTGTGAGTTGA
 
. : . : . : . : . : . :
rJMSF036D05+ GACATTTATTGTTTGACACCCTGTTTCAGGTTGCTACAAATGTAGGGTTTGAGCTACCAC
rJMSF003M17+ GACATTTATTGTTTGACACCCTGTTTCAGGTTGCTACAAATGTAGGGTTTGAGCTACCAC
                      ____________________________________________________________
consensus GACATTTATTGTTTGACACCCTGTTTCAGGTTGCTACAAATGTAGGGTTTGAGCTACCAC
 
. : . : . : . : . : . :
rJMSF036D05+ CACCTGGACAGTATGCAGTTGGGATGTTCTTTTTGCCTACTTCTGAAAGCCGAAGTGAGC
rJMSF003M17+ CACCTGGACAGTATGCAGTTGGGATGTTCTTTTTGCCTACTTCTGAAAGCCGAAGTGAGC
                      ____________________________________________________________
consensus CACCTGGACAGTATGCAGTTGGGATGTTCTTTTTGCCTACTTCTGAAAGCCGAAGTGAGC
 
. : . : . : . : . : . :
rJMSF036D05+ AAAGTAAAATTGTATTTACAAAGGTAATCTAAGCCCCAAAGGTTCTTTTATAATCAGCAT
rJMSF003M17+ AAAGTAAAATTGTATTTACAAAGGTAATCTAAGCCCCAAAGGTTCTTTTATAATCAGCAT
                      ____________________________________________________________
consensus AAAGTAAAATTGTATTTACAAAGGTAATCTAAGCCCCAAAGGTTCTTTTATAATCAGCAT
 
. : . : . : . : . : . :
rJMSF036D05+ GTTATGCCATTTTTCTTTATTGTTCCATTGGTCTTAATTGTTTAGAGTCATGATGAAGTG
rJMSF003M17+ GTTATGCCATTTTTCTTTATTGTTCCATTGGTCTTAATTGTTTAGAGTCATGATGAAGTG
                      ____________________________________________________________
consensus GTTATGCCATTTTTCTTTATTGTTCCATTGGTCTTAATTGTTTAGAGTCATGATGAAGTG
 
. : . : . : . : . : . :
rJMSF036D05+ AGGCTGGTTTACTTGACCATCATGTTTACATTATGCTTATTGCTTCTAAAATTTTGTGTT
rJMSF003M17+ AGGCTGGTTTACTTGACCATCATGTTTACATTATGCTTATTGCTTCTAAAATTTTGTGTT
                      ____________________________________________________________
consensus AGGCTGGTTTACTTGACCATCATGTTTACATTATGCTTATTGCTTCTAAAATTTTGTGTT
 
. : . : . : . : . : . :
rJMSF036D05+ TGCTTGTAGGTGGCTGAATCGCTGGGTCATACAGTCCGTTGATTCGAGCTGCATTAAACC
rJMSF003M17+ TGCTTGTAGGTGGCTGAATCGCTGGGTCATACAGTCCGTTGATTCGAGCTGCATTAAACC
                      ____________________________________________________________
consensus TGCTTGTAGGTGGCTGAATCGCTGGGTCATACAGTCCGTTGATTCGAGCTGCATTAAACC
 
. : . : . : . : . : . :
rJMSF036D05+ TCCAATATGGTGGTTTTAGAGATTTCTATATATGTTCTCTTTCCTCAAGGTGAGTTTGTC
rJMSF003M17+ TCCAATATGGTGGTTTTAGAGATTTCTATATATGTTCTCTTTCCTCAAGGTGAGTTTGTC
                      ____________________________________________________________
consensus TCCAATATGGTGGTTTTAGAGATTTCTATATATGTTCTCTTTCCTCAAGGTGAGTTTGTC
 
. : . : . : . : . : . :
rJMSF036D05+ TTGAGTTTTACTTAGTGGCTATTGCATTTCTGTGCTACAATGTCTCAAATTTTGATTTGC
rJMSF003M17+ TTGAGTTTTACTTAGTGGCTATTGCATTTCTGTGCTACAATGTCTCAAATTTTGATTTGC
                      ____________________________________________________________
consensus TTGAGTTTTACTTAGTGGCTATTGCATTTCTGTGCTACAATGTCTCAAATTTTGATTTGC
 
. : . : . : . : . : . :
rJMSF036D05+ TTCCTGTAGGACTGTTGTCTACAAATTAAAGGCCAGTTAAAGCCTGATCAGTTGCAGGAA
rJMSF003M17+ TTCCTGTAGGACTGTTGTCTACAAATTAAAGGCCAGTTAAAGCCTGATCAGTTGCAGGAA
                      ____________________________________________________________
consensus TTCCTGTAGGACTGTTGTCTACAAATTAAAGGCCAGTTAAAGCCTGATCAGTTGCAGGAA
 
. : . : . : . : . : . :
rJMSF036D05+ TACTACTATGCAGATCTTGGGAATCAAAGGTGGAACCATCATGTAGAAGTATCTGAAAAT
rJMSF003M17+ TACTACTATGCAGATCTTGGGAATCAAAGGTGGAACCATCATGTAGAAGTATCTGAAAAT
                      ____________________________________________________________
consensus TACTACTATGCAGATCTTGGGAATCAAAGGTGGAACCATCATGTAGAAGTATCTGAAAAT
 
. : . : . : . : . : . :
rJMSF036D05+ CATGTGTA-CATGATTACTGTAGTGTAGTCGTTAGAGAGACTAA
rJMSF003M17+ CATGTGTACCATGATTACTGTAGTGTAGTCGTTAGAGAGACTAACATGTTAAACCTTTCG
                      ____________________________________________________________
consensus CATGTGTACCATGATTACTGTAGTGTAGTCGTTAGAGAGACTAACATGTTAAACCTTTCG