Contig 012503:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF020I15Sequence527006580 (3)gb|ACJ84523.1|2e-66unknown [Medicago truncatula]722012503 (4)ref|XP_009770220.1|1e-126PREDICTED: mitogen-activated protein kinase homolog NTF4 [Nicotiana sylvestris]
JMSF003F10Sequence439017731gb|ACJ84523.1|1e-32unknown [Medicago truncatula]747012503 (4)ref|XP_009770220.1|3e-117PREDICTED: mitogen-activated protein kinase homolog NTF4 [Nicotiana sylvestris]
JMSF007E18Sequence484006580 (3)gb|ACJ84523.1|9e-61unknown [Medicago truncatula]785012503 (4)ref|XP_009770220.1|8e-128PREDICTED: mitogen-activated protein kinase homolog NTF4 [Nicotiana sylvestris]
JMSF031G01Sequence670006580 (3)gb|ACJ84523.1|2e-90unknown [Medicago truncatula]764012503 (4)ref|XP_009770220.1|2e-142PREDICTED: mitogen-activated protein kinase homolog NTF4 [Nicotiana sylvestris]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031G01+                                               GAAATACATACATTCTGCAAATG
                      ____________________________________________________________
consensus                                                  GAAATACATACATTCTGCAAATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031G01+          TTTGCACAGGGACTTGAAGCCCAGCAATCTACTATTGAATGCCAATTGTGATCTGAAAAT
rJMFF020I15+                                                                GAAAAT
rJMSF007E18+                                                                GAAAAT
                      ____________________________________________________________
consensus             TTTGCACAGGGACTTGAAGCCCAGCAATCTACTATTGAATGCCAATTGTGATCTGAAAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031G01+          ATGTGATTTTGGATTAGCTCGTGTGACATCCGAAACAGATTTTATGACTGAATATGTTGT
rJMFF020I15+          ATGTGATTTTGGATTAGCTCGTGTGACATCCGAAACAGATTTTATGACTGAATATGTTGT
rJMSF007E18+          ATGTGATTTTGGATTAGCTCGTGTGACATCCGAAACAGATTTTATGACTGAATATGTTGT
rJMSF003F10+                                           AACAGATTTTATGACTGAATATGTTGT
                      ____________________________________________________________
consensus             ATGTGATTTTGGATTAGCTCGTGTGACATCCGAAACAGATTTTATGACTGAATATGTTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031G01+          GACTAGATGGTACCGGCCACCTGAGCTATTATTGAACTCTTCTGACTACACTGCAGCCAT
rJMFF020I15+          GANTAGATGGTACCGGCCACCTGAGCTATTATTGAACTCTTCTGACTACACTGCAGCCAT
rJMSF007E18+          GACTAGATGGTACCGGCCACCTGAGCTATTATTGAACTCTTCTGACTACACTGCAGCCAT
rJMSF003F10+          GACTAGATGGTACCGGCCACCTGAGCTATTATTGAACTCTTCTGACTACACTGCAGCCAT
                      ____________________________________________________________
consensus             GACTAGATGGTACCGGCCACCTGAGCTATTATTGAACTCTTCTGACTACACTGCAGCCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031G01+          TGATGTATGGTCAGTGGGTTGTATTTTCATGGAATTGATGGATCGGAAACCCCTATTCCC
rJMFF020I15+          TGATGTATGGTCAGTGGGTTGTATTTTCATGGGATTGATGGATCGGAAACCCCTATTCCC
rJMSF007E18+          TGATGTATGGTCAGTGGGTTGTATTTTCATGGAATTGATGGATCGGAAACCCCTATTCCC
rJMSF003F10+          TGATGTATGGTCAGTGGGTTGTATTTTCATGGAATTGATGGATCGGAAACCCCTATTCCC
                      ____________________________________________________________
consensus             TGATGTATGGTCAGTGGGTTGTATTTTCATGGAATTGATGGATCGGAAACCCCTATTCCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031G01+          TGGTAGAGATCATGTCCACCAGCTACGTCTGCTTATGGAGCTAATAGGTACACCTTCGGA
rJMFF020I15+          TGGTAGAGATCATGTCCACCAGCTACGTCTGCTTATGGAGCTAATAGGTACACCTTCGGA
rJMSF007E18+          TGGTAGAGATCATGTCCACCAGCTACGTCTGCTTATGGAGCTAATAGGTACACCTTCGGA
rJMSF003F10+          TGGTAGAGATCATGTCCACCAGCTACGTCTGCTTATGGAGCTAATAGGTACACCTTCGGA
                      ____________________________________________________________
consensus             TGGTAGAGATCATGTCCACCAGCTACGTCTGCTTATGGAGCTAATAGGTACACCTTCGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031G01+          GGCTGAAATGGAGTTTTTGAATGAGAATGCGAAAAAATATATCCGGCAGCTTCCATTATA
rJMFF020I15+          GGCTGAAATGGAGTTTTTGAATGAGAATGCGAAAAAATATATCCGGCAGCTTCCATTATA
rJMSF007E18+          GGCTGAAATGGAGTTTTTGAATGAGAATGCGAAAAAATATATCCGGCAGCTTCCATTATA
rJMSF003F10+          GGCTGAAATGGAGTTTTTGAATGAGAATGCGAAAAAATATATCCGGCAGCTTCCATTATA
                      ____________________________________________________________
consensus             GGCTGAAATGGAGTTTTTGAATGAGAATGCGAAAAAATATATCCGGCAGCTTCCATTATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031G01+          TCGTCGCCAGTCATTTACTGAAAGGTTTCCACATGCGCACCCTGGTGCTATTGATCTTGT
rJMFF020I15+          TCGTCGCCAGTCATTTACTGAAAGGTTTCCACATGCGCACCCTGGTGCTATTGATCTTGT
rJMSF007E18+          TCGTCGCCAGTCATTTACTGAAAGGTTTCCACATGCGCACCCTGGTGCTATTGATCTTGT
rJMSF003F10+          TCGTCGCCAGTCATTTACTGAAAGGTTTCCACATGCGCACCCTGGTGCTATTGATCTTGT
                      ____________________________________________________________
consensus             TCGTCGCCAGTCATTTACTGAAAGGTTTCCACATGCGCACCCTGGTGCTATTGATCTTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031G01+          TGAGAAAATGTTGACATTTGATCCCAGGCGAAGAATTACCGTTGAAGGTGCACTTGCGCA
rJMFF020I15+          TGAGAAAATGTTGACATTTGATCCCAGGCGAAGAATTACCGTTGAAGGTGCACTTGCGCA
rJMSF007E18+          TGAGAAAATGTTGACATTTGATCCCAGGCGAAGAATTACCGTTGAAGGTGCACTTGCGCA
rJMSF003F10+          TGAGAAAATGTTGACATTTGATCCCAGGCGAAGAATTACCGTTGAAGGTGCACTTGCGCA
                      ____________________________________________________________
consensus             TGAGAAAATGTTGACATTTGATCCCAGGCGAAGAATTACCGTTGAAGGTGCACTTGCGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031G01+          TCCTTACCTAACATCACTCCACGATATCAGTGACGAGCCAAGTTGCACGACTCCCTTTAA
rJMFF020I15+          TCCTTACCTAACATCACTCCACGATATCAGTGACGAGCCAAGTTGCACGACTCCCTTTAA
rJMSF007E18+          TCCTTACCTAACATCACTCCACGATATCAGTGACGAGCCAAGTTGCACGACTCCCTTTAA
rJMSF003F10+          TCCTTACCTAACATCACTCCACGATATCAGTGACGAGCCAAGTTGCACGACTCCCTTTAA
                      ____________________________________________________________
consensus             TCCTTACCTAACATCACTCCACGATATCAGTGACGAGCCAAGTTGCACGACTCCCTTTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031G01+          CTTTGATTTTGAGCAGCATGCATTGAGCGAGGAGCAGATGAAGGAGCTGATTTACCGAGA
rJMFF020I15+          CTTTGATTTTGAGCAGCATGCATTGAGCGAGGAGCAGATGAAGGAGCTGATTTACCGAGA
rJMSF007E18+          CTTTGATTTTGAGCAGCATGCATTGAGCGAGGAGCAGATGAAGGAGCTGATTTACCGAGA
rJMSF003F10+          CTTTGATTTTGAGCAGCATGCATTGAGCGAGGAGCAGATGAAGGAGCTGATTTACCGAGA
                      ____________________________________________________________
consensus             CTTTGATTTTGAGCAGCATGCATTGAGCGAGGAGCAGATGAAGGAGCTGATTTACCGAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031G01+          GGCCGTTGCTTTCAACCCCGAGTTTGAGCAGCAAATGTGATGAATGAGAGTTGTTGTTAG
rJMFF020I15+          GGCCGTTGCTTTCAACCCCGAGTTTGAGCAGCAAATGTGATGAATGAGAGTTGTTGTTAG
rJMSF007E18+          GGCCGTTGCTTTCAACCCCGAGTTTGAGCAGCAAATGTGATGAATGAGAGTTGTTGTTAG
rJMSF003F10+          GGCCGTTGCTTTCAACCCCGAGTTTGAGCAGCAAATGTGATGAATGAGAGTTGTTGTTAG
                      ____________________________________________________________
consensus             GGCCGTTGCTTTCAACCCCGAGTTTGAGCAGCAAATGTGATGAATGAGAGTTGTTGTTAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031G01+          AGTTGTGGCCCTGTGAATTGTGATACTTATCGATTTCATGATTGCTTTATTCATCTGTTA
rJMFF020I15+          AGTTGTGGCCCTGTGAATTGTGATACTTATCGATTTCATGATTGCTTTATTCATCTGTTA
rJMSF007E18+          AGTTGTGGCCCTGTGAATTGTGATACTTATCGATTTCATGATTGCTTTATTCATCTGTTA
rJMSF003F10+          AGTTGTGGCCCTGTGAATTGTGATACTTATCGATTTCATGATTGCTTTATTCATCTGTTA
                      ____________________________________________________________
consensus             AGTTGTGGCCCTGTGAATTGTGATACTTATCGATTTCATGATTGCTTTATTCATCTGTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF031G01+          AACCTGTCTGATATTTTCAAC                                       
rJMFF020I15+          AACCTGTCTGATATTTTCAACATTTGATTGTGGGACAATTCGGGTATTCAAAA       
rJMSF007E18+          AACCTGTCTGATATTTTCAACATTTGATTGTGGGACAATTCGGGTATTCAAAAATTGTTG
rJMSF003F10+          AACCTGTCTGATATTTTCAACATTTGATTGTGGGACAATTCGGGTATTCAAAAATTGTTG
                      ____________________________________________________________
consensus             AACCTGTCTGATATTTTCAACATTTGATTGTGGGACAATTCGGGTATTCAAAAATTGTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF007E18+          TTGTATGAGTGAGGTAGTTACCACTTTGTGTTTAATGCATTGAAGTCCCTAGTAGTTCA 
rJMSF003F10+          TTGTATGAGTGAGGTAGTTACCACTTTGTGTTTAATGCATTGAAGTCCCTAGTAGTTCAA
                      ____________________________________________________________
consensus             TTGTATGAGTGAGGTAGTTACCACTTTGTGTTTAATGCATTGAAGTCCCTAGTAGTTCAA